pycom17g07790

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014406
Physical Location & Seq
Forward (+)
5745440 .. 5746475
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 954 bp
ATGCGGATAAGCTGTAATGGATGCCGAATACTCCGCAAGGGCTGCAGCGAGAATTGCAGCATCAGGCCTTGCTTGCAGTGGATTAAGAGCCCGGAATCCCAAGCAAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGACTCATGAACCTCATCAACGCCGGCCCCGAACACCTCCGCCCTGGTCAGGCGCTAATAGTTTTTGCTTTTGGTAATACAGCCATCTTTCGGTCTTTGCTATACGAGGCATGCGGTCGGATTGTGAACCCGATTTACGGGTCGGTCGGGTTGTTGTGGTCCGGGAGCTGGCAGCTCTGCCAAGTCGCCGTTGAAGCCGTGCTGAAAGGCCAGTCGATTACGCCGATTACTTCCGAAGCGGCGGCGAATGGGCATGGTCCGCCTCTCAAGGCCTACGACATTCGCCACGTGTCCAAGGACGAGAACTCGGCCGCGTCCAACGATCCTCAGAAGGTTAAGACCCGGTACCGCTTCAAACGGTCCGCTGTCAAGCCGAAGACCAATAAGGTCGGTTCCGGCTCGGGCTCTGGCTGTGGCTCGGGAGCTGATGAATCGGCCAAGCCGAGTTGGACTGGCTGCTCTGCGGACAAGTTCAACCGGTCGATGAGTCACGAGTCATCGCTGAGTCACCAGTCCGAGGCGGCTGCCACCGTGGACGGTGATAGCAAGGAATCGGAGAGCATGATTTCGTCCGAGACGGCTGAGGCTGAGCTCTTTTTCCGAGCCGAGCCCGAGTCGGCTCGCAAGCGGACGGAGTCTGTTCAGGATGGGGAGCTAGCTTTGGAGCTGACGCTTGGGTTGCAGCCGCAATCACGTGCCAACCACGTCGTTCCGGTGAAGAAGAGAAGAATTGAGGCTGGCTTCGGCGGCGTATCGCCGGCTGACGACGGCGCGTGTAAAATAGAGCTGGGGCTGGATTACGTGGCTTGA

Protein Analysis

318

Amino Acids

33.94

Weight (kDa)

8.63

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 115 2.2e-18 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02550
fragaria_vesca FvH4_6g45150
malus_domestica MD09G1088700.v1.1 MD17G1078600.v1.1
prunus_persica Prupe.3G236200_v2.0.a1
pyrus_communis pycom09g01450 pycom17g07790
rosa_chinensis RchiOBHm_Chr2g0162621
rosa_laevigata RLG00000021353
rosa_multiflora Rmu_ssc0000364.1_g000001
rosa_roxburghii Rroxscaffold_2G00087820
rosa_rugosa Rorug02G0498400
rosa_samantha Rh2AG564500 Rh2BG577400 Rh2CG547100 Rh2DG587000
rosa_wichuraiana Rw2G046700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 489
AccB1I GGYRCC 1 cut(s) 489
AccII CGCG 3 cut(s) 141, 458, 917
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 3 cut(s) 136, 453, 579
AcvI CACGTG 2 cut(s) 433, 839
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 5 cut(s) 193, 234, 281, 312, 661
AflIII ACRYGT 1 cut(s) 432
AgeI ACCGGT 1 cut(s) 621
AgsI TTSAA 3 cut(s) 338, 499, 619
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 9 cut(s) 12, 312, 319, 569, 736, 799, 803, 811, 931
AluI AGCT 9 cut(s) 12, 312, 319, 569, 736, 799, 803, 811, 931
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 1 cut(s) 461
Ama87I CYCGRG 3 cut(s) 544, 562, 755
AoxI GGCC 7 cut(s) 65, 136, 169, 352, 414, 453, 579
ApeKI GCWGC 7 cut(s) 42, 45, 57, 316, 600, 668, 826
AsiGI ACCGGT 1 cut(s) 621
Asp718I GGTACC 1 cut(s) 489
AspLEI GCGC 3 cut(s) 143, 199, 917
AspS9I GGNCC 4 cut(s) 170, 303, 401, 504
AsuC2I CCSGG 3 cut(s) 92, 307, 487
AsuHPI GGTGA 3 cut(s) 644, 695, 871
AsuNHI GCTAGC 1 cut(s) 799
AvaI CYCGRG 3 cut(s) 544, 562, 755
AvaII GGWCC 3 cut(s) 303, 401, 504
BanI GGYRCC 1 cut(s) 489
BanII GRGCYC 4 cut(s) 92, 551, 738, 756
BauI CACGAG 1 cut(s) 635
BbrPI CACGTG 2 cut(s) 433, 839
BbsI GAAGAC 2 cut(s) 109, 527
Bbv12I GWGCWC 1 cut(s) 738
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 7 cut(s) 29, 57, 69, 328, 587, 655, 838
BccI CCATC 2 cut(s) 236, 785
BceAI ACGGC 5 cut(s) 151, 317, 326, 738, 928
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 1 cut(s) 189
BcnI CCSGG 3 cut(s) 92, 307, 487
BcoDI GTCTC 1 cut(s) 713
BfaI CTAG 1 cut(s) 800
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 200
BlpI GCTNAGC 1 cut(s) 732
Bme1390I CCNGG 4 cut(s) 92, 189, 307, 487
Bme18I GGWCC 3 cut(s) 303, 401, 504
BmeT110I CYCGRG 3 cut(s) 544, 562, 755
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 4 cut(s) 170, 303, 401, 504
BmiI GGNNCC 3 cut(s) 172, 491, 538
BmrFI CCNGG 4 cut(s) 92, 189, 307, 487
BmsI GCATC 2 cut(s) 11, 69
BmtI GCTAGC 1 cut(s) 803
BpiI GAAGAC 2 cut(s) 109, 527
Bpu10I CCTNAGC 1 cut(s) 726
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 3 cut(s) 92, 307, 487
BsaAI YACGTR 3 cut(s) 433, 839, 946
BsaJI CCNNGG 4 cut(s) 187, 438, 660, 675
BsaWI WCCGGW 2 cut(s) 621, 856
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 234, 281, 312, 661
Bse118I RCCGGY 3 cut(s) 167, 621, 901
Bse1I ACTGG 3 cut(s) 355, 601, 655
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 4 cut(s) 187, 438, 660, 675
BseGI GGATG 2 cut(s) 26, 796
BseLI CCNNNNNNNGG 5 cut(s) 193, 234, 281, 312, 661
BseMII CTCAG 4 cut(s) 485, 638, 717, 723
BseNI ACTGG 3 cut(s) 355, 601, 655
BseX3I CGGCCG 2 cut(s) 136, 453
BseXI GCAGC 7 cut(s) 29, 57, 69, 328, 587, 655, 838
BseYI CCCAGC 1 cut(s) 931
Bsh1236I CGCG 3 cut(s) 141, 458, 917
Bsh1285I CGRYCG 5 cut(s) 139, 262, 291, 456, 626
BshFI GGCC 7 cut(s) 67, 138, 171, 354, 416, 455, 581
BshNI GGYRCC 1 cut(s) 489
BshTI ACCGGT 1 cut(s) 621
BsiEI CGRYCG 5 cut(s) 139, 262, 291, 456, 626
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 3 cut(s) 544, 562, 755
BsiSI CCGG 9 cut(s) 92, 144, 168, 306, 487, 540, 622, 857, 902
BslI CCNNNNNNNGG 5 cut(s) 193, 234, 281, 312, 661
BsmAI GTCTC 1 cut(s) 713
BsmBI CGTCTC 1 cut(s) 713
BsnI GGCC 7 cut(s) 67, 138, 171, 354, 416, 455, 581
BsoBI CYCGRG 3 cut(s) 544, 562, 755
Bsp1286I GDGCHC 4 cut(s) 92, 551, 738, 756
Bsp143I GATC 1 cut(s) 466
Bsp1720I GCTNAGC 1 cut(s) 732
BspANI GGCC 7 cut(s) 67, 138, 171, 354, 416, 455, 581
BspCNI CTCAG 4 cut(s) 484, 639, 718, 724
BspFNI CGCG 3 cut(s) 141, 458, 917
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 172, 491, 538
BspMAI CTGCAG 1 cut(s) 47
BspOI GCTAGC 1 cut(s) 803
BspPI GGATC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 489
BsrFI RCCGGY 3 cut(s) 167, 621, 901
BsrI ACTGG 3 cut(s) 355, 601, 655
BssAI RCCGGY 3 cut(s) 167, 621, 901
BssECI CCNNGG 4 cut(s) 187, 438, 660, 675
BssMI GATC 1 cut(s) 466
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 4 cut(s) 115, 504, 676, 683
Bst6I CTCTTC 1 cut(s) 860
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 3 cut(s) 433, 839, 946
BstC8I GCNNGC 9 cut(s) 74, 169, 256, 314, 766, 770, 801, 883, 903
BstDEI CTNAG 4 cut(s) 471, 647, 726, 732
BstDSI CCRYGG 1 cut(s) 675
BstF5I GGATG 2 cut(s) 26, 796
BstFNI CGCG 3 cut(s) 141, 458, 917
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 3 cut(s) 143, 199, 917
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 1 cut(s) 466
BstMCI CGRYCG 5 cut(s) 139, 262, 291, 456, 626
BstMWI GCNNNNNNNGC 7 cut(s) 42, 54, 73, 338, 403, 823, 891
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 4 cut(s) 90, 187, 305, 485
BstSFI CTRYAG 1 cut(s) 43
BstUI CGCG 3 cut(s) 141, 458, 917
BstV1I GCAGC 7 cut(s) 29, 57, 69, 328, 587, 655, 838
BstV2I GAAGAC 2 cut(s) 109, 527
BstZI CGGCCG 2 cut(s) 136, 453
BsuRI GGCC 7 cut(s) 67, 138, 171, 354, 416, 455, 581
BtgI CCRYGG 1 cut(s) 675
BtgZI GCGATG 1 cut(s) 627
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 2 cut(s) 26, 796
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 9 cut(s) 74, 169, 256, 314, 766, 770, 801, 883, 903
CciI TCATGA 1 cut(s) 150
CfoI GCGC 3 cut(s) 143, 199, 917
Cfr10I RCCGGY 3 cut(s) 167, 621, 901
Cfr13I GGNCC 4 cut(s) 170, 303, 401, 504
CpoI CGGWCCG 1 cut(s) 504
CseI GACGC 2 cut(s) 447, 823
Csp6I GTAC 1 cut(s) 490
CspAI ACCGGT 1 cut(s) 621
CspI CGGWCCG 1 cut(s) 504
CviAII CATG 4 cut(s) 151, 255, 398, 706
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 4 cut(s) 471, 647, 726, 732
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
EaeI YGGCCR 3 cut(s) 136, 453, 579
EagI CGGCCG 2 cut(s) 136, 453
Eam1104I CTCTTC 1 cut(s) 860
EarI CTCTTC 1 cut(s) 860
EciI GGCGGA 2 cut(s) 173, 393
Ecl136II GAGCTC 1 cut(s) 736
EclXI CGGCCG 2 cut(s) 136, 453
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 2 cut(s) 67, 416
Eco24I GRGCYC 4 cut(s) 92, 551, 738, 756
Eco47I GGWCC 3 cut(s) 303, 401, 504
Eco52I CGGCCG 2 cut(s) 136, 453
Eco53kI GAGCTC 1 cut(s) 736
Eco72I CACGTG 2 cut(s) 433, 839
Eco88I CYCGRG 3 cut(s) 544, 562, 755
EcoICRI GAGCTC 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 4 cut(s) 92, 551, 738, 756
ErhI CCWWGG 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 713
FaeI CATG 4 cut(s) 154, 258, 401, 709
FaiI YATR 5 cut(s) 152, 247, 256, 399, 707
FatI CATG 4 cut(s) 150, 254, 397, 705
FokI GGATG 2 cut(s) 33, 803
FriOI GRGCYC 4 cut(s) 92, 551, 738, 756
FspBI CTAG 1 cut(s) 800
GlaI GCGC 3 cut(s) 142, 198, 916
GsaI CCCAGC 1 cut(s) 935
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 7 cut(s) 67, 138, 171, 354, 416, 455, 581
HapII CCGG 9 cut(s) 92, 144, 168, 306, 487, 540, 622, 857, 902
HgaI GACGC 2 cut(s) 447, 823
HhaI GCGC 3 cut(s) 143, 199, 917
Hin1II CATG 4 cut(s) 154, 258, 401, 709
Hin6I GCGC 3 cut(s) 141, 197, 915
HinP1I GCGC 3 cut(s) 141, 197, 915
HinfI GANTC 9 cut(s) 95, 147, 575, 631, 638, 649, 695, 758, 779
HpaII CCGG 9 cut(s) 92, 144, 168, 306, 487, 540, 622, 857, 902
HphI GGTGA 3 cut(s) 644, 695, 871
Hpy166II GTNNAC 2 cut(s) 271, 679
Hpy188I TCNGA 7 cut(s) 264, 379, 474, 661, 700, 718, 746
Hpy188III TCNNGA 4 cut(s) 151, 564, 635, 788
Hpy8I GTNNAC 2 cut(s) 271, 679
Hpy99I CGWCG 2 cut(s) 854, 914
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 4 cut(s) 115, 504, 676, 683
HpyCH4IV ACGT 4 cut(s) 432, 838, 849, 945
HpyCH4V TGCA 4 cut(s) 45, 57, 76, 826
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 54, 73, 338, 403, 823, 891
HpyF3I CTNAG 4 cut(s) 471, 647, 726, 732
HpySE526I ACGT 4 cut(s) 432, 838, 849, 945
Hsp92II CATG 4 cut(s) 154, 258, 401, 709
HspAI GCGC 3 cut(s) 141, 197, 915
KpnI GGTACC 1 cut(s) 493
KroI GCCGGC 2 cut(s) 167, 901
KroNI GCCGGC 2 cut(s) 169, 903
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 4 cut(s) 309, 566, 796, 808
Lsp1109I GCAGC 7 cut(s) 29, 57, 69, 328, 587, 655, 838
LweI GCATC 2 cut(s) 11, 69
MaeI CTAG 1 cut(s) 800
MaeII ACGT 4 cut(s) 432, 838, 849, 945
MaeIII GTNAC 2 cut(s) 632, 650
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 5 cut(s) 109, 532, 874, 877, 882
MhlI GDGCHC 4 cut(s) 92, 551, 738, 756
MluCI AATT 2 cut(s) 52, 873
MlyI GAGTC 6 cut(s) 141, 640, 647, 658, 767, 788
MmeI TCCRAC 3 cut(s) 242, 486, 572
MnlI CCTC 9 cut(s) 131, 167, 191, 244, 417, 480, 655, 721, 871
MroNI GCCGGC 2 cut(s) 167, 901
MseI TTAA 2 cut(s) 84, 480
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 9 cut(s) 92, 144, 168, 306, 487, 540, 622, 857, 902
MspR9I CCNGG 4 cut(s) 92, 189, 307, 487
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 3 cut(s) 141, 458, 917
MwoI GCNNNNNNNGC 7 cut(s) 42, 54, 73, 338, 403, 823, 891
NaeI GCCGGC 2 cut(s) 169, 903
NciI CCSGG 3 cut(s) 92, 307, 487
NdeII GATC 1 cut(s) 466
NgoMIV GCCGGC 2 cut(s) 167, 901
NheI GCTAGC 1 cut(s) 799
NlaIII CATG 4 cut(s) 154, 258, 401, 709
NlaIV GGNNCC 3 cut(s) 172, 491, 538
NmeAIII GCCGAG 3 cut(s) 431, 612, 775
NmuCI GTSAC 2 cut(s) 632, 650
NspI RCATGY 1 cut(s) 258
PaeI GCATGC 1 cut(s) 258
PagI TCATGA 1 cut(s) 150
PceI AGGCCT 2 cut(s) 67, 416
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 365, 584
PdiI GCCGGC 2 cut(s) 169, 903
PfeI GAWTC 3 cut(s) 95, 575, 695
PflFI GACNNNGTC 1 cut(s) 778
PfoI TCCNGGA 1 cut(s) 305
PinAI ACCGGT 1 cut(s) 621
PleI GAGTC 6 cut(s) 141, 639, 646, 657, 766, 787
PmaCI CACGTG 2 cut(s) 433, 839
PmlI CACGTG 2 cut(s) 433, 839
PpsI GAGTC 6 cut(s) 141, 639, 646, 657, 766, 787
Ppu21I YACGTR 3 cut(s) 433, 839, 946
Psp124BI GAGCTC 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 187
PspCI CACGTG 2 cut(s) 433, 839
PspFI CCCAGC 1 cut(s) 931
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 3 cut(s) 172, 491, 538
PspPI GGNCC 4 cut(s) 170, 303, 401, 504
PsrI GAACNNNNNNTAC 2 cut(s) 263, 295
PstI CTGCAG 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 778
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
Rsr2I CGGWCCG 1 cut(s) 504
RsrII CGGWCCG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 738
SaqAI TTAA 2 cut(s) 84, 480
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 4 cut(s) 170, 303, 401, 504
SchI GAGTC 6 cut(s) 141, 640, 647, 658, 767, 788
ScrFI CCNGG 4 cut(s) 92, 189, 307, 487
SduI GDGCHC 4 cut(s) 92, 551, 738, 756
SfaNI GCATC 2 cut(s) 11, 69
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 3 cut(s) 303, 401, 504
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SphI GCATGC 1 cut(s) 258
Sse9I AATT 2 cut(s) 52, 873
SseBI AGGCCT 2 cut(s) 67, 416
SspMI CTAG 1 cut(s) 800
SstI GAGCTC 1 cut(s) 738
StuI AGGCCT 2 cut(s) 67, 416
StyD4I CCNGG 4 cut(s) 90, 187, 305, 485
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 4 cut(s) 115, 504, 676, 683
TaiI ACGT 4 cut(s) 435, 841, 852, 948
TaqI TCGA 2 cut(s) 359, 626
TaqII GACCGA 2 cut(s) 225, 277
TasI AATT 2 cut(s) 52, 873
TauI GCSGC 7 cut(s) 141, 386, 389, 458, 668, 832, 894
TfiI GAWTC 3 cut(s) 95, 575, 695
Tru1I TTAA 2 cut(s) 84, 480
Tru9I TTAA 2 cut(s) 84, 480
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 2 cut(s) 632, 650
TseI GCWGC 7 cut(s) 42, 45, 57, 316, 600, 668, 826
Tsp45I GTSAC 2 cut(s) 632, 650
TspDTI ATGAA 2 cut(s) 167, 588
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 1 cut(s) 83
Tth111I GACNNNGTC 1 cut(s) 778
VpaK11BI GGWCC 3 cut(s) 303, 401, 504
XceI RCATGY 1 cut(s) 258
XspI CTAG 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.