pycom17g08390

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011478
Physical Location & Seq
Forward (+)
6237397 .. 6239213
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 903 bp
ATGGATTTCGACCTCGAAAACCCACTTACAATTTCCCATGACTTCCACTCTGAAACACTCACTTCTTTGTTTTCCACTGAATCTGATCACATGACATCAGAGACTTACTTTCAAAGCCTGAAAGCTCGAGACTTCGACATCTCGATTCGAAGGGAAGCCATCTCTTCCATCTCAGAGCTGTGTTGCAACTCTGATGAACTTTTACTGTACCTTGCTGTAAATTATCTGGATCGGTTCTTGTCCTGCCAAGGAATGCTGAAACCAAAGCCATGGCTCATAAAGCTTCTTGCAATCTCCTGCATTTCTTTAGCTTCCAAGATGAAGAAATCAGAATTCTCTCTACATGATGTTCAGGGTGATGGAGGCATCATTTTCGACACACAAACAATTCAAAGGATGGAAGTACTCATATTGGGAGCTCTAAAATGGAGAATGCGTTCCATAACACCCTTCTCATTCATGTCATTTTTCATTTCTTTGTTCAAACTAGAAGACCCGCCATTGCTGCAGGCTCTCAAAGCCAGAGCCACCCAAATCATCTTCAAATCTCAAAAGGATGTTGAGCTTTTAGTGTTCAAGCCATCAATAATCGCGGCCGCTGCTCTCCTCTCTGCTTCTCACGAGTTATTTCCTATGCAATTCTCCTGCTTTAAAAAAGCACTATCCCACTGTTCATATGTAAATAAGGAAAACATGTTGCAATGCTATAGTGCAATGCAAGGCATTGTGGTTGATGGGTTCGATTCAATGCTAGAGAGGGTGTGTAGCTCGGTCGTCACACCAGCCAATGTGCTAGACCATACTTTTTCAAGCTCGGCAGAAAGTGGAAAAACCGGAGTCACAAGCATTACCACGTTGAGAATGGAGAGGGACTTGAAGAGGAGAAAAATTAGTGTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

301

Amino Acids

33.84

Weight (kDa)

6.66

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 20 - 146 2.4e-17 Cyclin, N-terminal domain
Cyclin_C PF02984 148 - 243 8.8e-10 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03270 AT4G03270
fragaria_vesca FvH4_6g44360
malus_domestica MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis pycom09g02220 pycom17g08390
rosa_chinensis RchiOBHm_Chr2g0161291
rosa_laevigata RLG00000021276
rosa_multiflora Rmu_ssc0000196.1_g000006
rosa_roxburghii Rroxscaffold_2G00088940
rosa_rugosa Rorug02G0488000 Rorug02G0488100
rosa_samantha Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana Rw2G045890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 593
AciI CCGC 3 cut(s) 497, 593, 597
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 3 cut(s) 209, 405, 897
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 8 cut(s) 113, 392, 484, 544, 577, 747, 810, 877
AloI GAACNNNNNNTCC 2 cut(s) 421, 453
AluBI AGCT 8 cut(s) 125, 178, 283, 311, 419, 565, 768, 813
AluI AGCT 8 cut(s) 125, 178, 283, 311, 419, 565, 768, 813
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 95, 123
AlwI GGATC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 594
ApeKI GCWGC 2 cut(s) 505, 599
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 126
BanII GRGCYC 1 cut(s) 421
BauI CACGAG 1 cut(s) 620
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 2 cut(s) 492, 586
BccI CCATC 6 cut(s) 167, 176, 353, 391, 589, 728
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 95, 123
BfaI CTAG 3 cut(s) 488, 752, 794
BfmI CTRYAG 2 cut(s) 506, 706
BisI GCNGC 4 cut(s) 506, 594, 597, 600
BlsI GCNGC 4 cut(s) 507, 595, 598, 601
BmcAI AGTACT 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 126
BmsI GCATC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 247, 269
BsaWI WCCGGW 1 cut(s) 833
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bse3DI GCAATG 3 cut(s) 500, 707, 720
BseDI CCNNGG 2 cut(s) 247, 269
BseGI GGATG 2 cut(s) 402, 562
BseMI GCAATG 3 cut(s) 500, 707, 720
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 596, 895
BseX3I CGGCCG 1 cut(s) 594
BseXI GCAGC 2 cut(s) 492, 586
Bsh1236I CGCG 1 cut(s) 593
Bsh1285I CGRYCG 2 cut(s) 597, 774
BshFI GGCC 1 cut(s) 596
BsiEI CGRYCG 2 cut(s) 597, 774
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 834
BslFI GGGAC 1 cut(s) 884
BsmAI GTCTC 2 cut(s) 95, 123
BsmFI GGGAC 1 cut(s) 884
BsmI GAATGC 2 cut(s) 258, 438
BsnI GGCC 1 cut(s) 596
BsoBI CYCGRG 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 85, 229
Bsp19I CCATGG 1 cut(s) 269
BspACI CCGC 3 cut(s) 497, 593, 597
BspANI GGCC 1 cut(s) 596
BspCNI CTCAG 1 cut(s) 185
BspFNI CGCG 1 cut(s) 593
BspMAI CTGCAG 1 cut(s) 510
BspPI GGATC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 148
BsrDI GCAATG 3 cut(s) 500, 707, 720
BssECI CCNNGG 2 cut(s) 247, 269
BssMI GATC 2 cut(s) 85, 229
BssSI CACGAG 1 cut(s) 620
BssT1I CCWWGG 2 cut(s) 247, 269
Bst2BI CACGAG 1 cut(s) 620
Bst4CI ACNGT 3 cut(s) 207, 671, 900
Bst6I CTCTTC 2 cut(s) 169, 872
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 1 cut(s) 172
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 2 cut(s) 402, 562
BstFNI CGCG 1 cut(s) 593
BstKTI GATC 2 cut(s) 88, 232
BstMAI GTCTC 2 cut(s) 95, 123
BstMBI GATC 2 cut(s) 85, 229
BstMCI CGRYCG 2 cut(s) 597, 774
BstMWI GCNNNNNNNGC 4 cut(s) 280, 505, 518, 599
BstNSI RCATGY 1 cut(s) 697
BstSFI CTRYAG 2 cut(s) 506, 706
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 2 cut(s) 492, 586
BstV2I GAAGAC 1 cut(s) 498
BstXI CCANNNNNNTGG 1 cut(s) 270
BstZI CGGCCG 1 cut(s) 594
BsuRI GGCC 1 cut(s) 596
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 2 cut(s) 402, 562
BtsIMutI CAGTG 2 cut(s) 75, 667
Cac8I GCNNGC 1 cut(s) 510
CciNI GCGGCCGC 1 cut(s) 594
Csp6I GTAC 3 cut(s) 208, 404, 896
CviAII CATG 6 cut(s) 38, 91, 270, 344, 460, 694
CviQI GTAC 3 cut(s) 208, 404, 896
DdeI CTNAG 1 cut(s) 172
DpnI GATC 2 cut(s) 87, 231
DpnII GATC 2 cut(s) 85, 229
DraI TTTAAA 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 594
EagI CGGCCG 1 cut(s) 594
Eam1104I CTCTTC 2 cut(s) 169, 872
EarI CTCTTC 2 cut(s) 169, 872
Ecl136II GAGCTC 1 cut(s) 419
EclXI CGGCCG 1 cut(s) 594
Eco130I CCWWGG 2 cut(s) 247, 269
Eco24I GRGCYC 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 594
Eco53kI GAGCTC 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 247, 269
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 2 cut(s) 247, 269
FaeI CATG 6 cut(s) 41, 94, 273, 347, 463, 697
FaqI GGGAC 1 cut(s) 884
FatI CATG 6 cut(s) 37, 90, 269, 343, 459, 693
FauI CCCGC 1 cut(s) 504
FauNDI CATATG 1 cut(s) 676
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 4 cut(s) 506, 594, 597, 600
FokI GGATG 2 cut(s) 409, 569
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 506, 594, 597, 600
FspBI CTAG 3 cut(s) 488, 752, 794
GluI GCNGC 4 cut(s) 506, 594, 597, 600
HaeIII GGCC 1 cut(s) 596
HapII CCGG 1 cut(s) 834
Hin1II CATG 6 cut(s) 41, 94, 273, 347, 463, 697
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 4 cut(s) 80, 145, 743, 837
HpaII CCGG 1 cut(s) 834
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 896
Hpy188I TCNGA 6 cut(s) 52, 85, 100, 175, 193, 331
Hpy188III TCNNGA 4 cut(s) 128, 142, 227, 620
Hpy8I GTNNAC 1 cut(s) 896
HpyAV CCTTC 2 cut(s) 144, 460
HpyCH4III ACNGT 3 cut(s) 207, 671, 900
HpyCH4IV ACGT 1 cut(s) 854
HpyCH4V TGCA 8 cut(s) 186, 290, 300, 508, 637, 700, 713, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 505, 518, 599
HpyF3I CTNAG 1 cut(s) 172
HpySE526I ACGT 1 cut(s) 854
Hsp92II CATG 6 cut(s) 41, 94, 273, 347, 463, 697
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 229
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 2 cut(s) 492, 586
LweI GCATC 1 cut(s) 375
MaeI CTAG 3 cut(s) 488, 752, 794
MaeII ACGT 1 cut(s) 854
MaeIII GTNAC 2 cut(s) 775, 838
MalI GATC 2 cut(s) 87, 231
MboI GATC 2 cut(s) 85, 229
MboII GAAGA 5 cut(s) 156, 334, 503, 532, 889
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 6 cut(s) 30, 220, 332, 387, 638, 888
MlyI GAGTC 1 cut(s) 846
MnlI CCTC 6 cut(s) 23, 356, 617, 750, 861, 873
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 1 cut(s) 651
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 1 cut(s) 834
Mva1269I GAATGC 2 cut(s) 258, 438
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 4 cut(s) 280, 505, 518, 599
NcoI CCATGG 1 cut(s) 269
NdeI CATATG 1 cut(s) 676
NdeII GATC 2 cut(s) 85, 229
NlaIII CATG 6 cut(s) 41, 94, 273, 347, 463, 697
NmeAIII GCCGAG 1 cut(s) 794
NmuCI GTSAC 2 cut(s) 775, 838
NotI GCGGCCGC 1 cut(s) 594
NspI RCATGY 1 cut(s) 697
NspV TTCGAA 1 cut(s) 148
PaeR7I CTCGAG 1 cut(s) 126
PciI ACATGT 1 cut(s) 693
PctI GAATGC 2 cut(s) 258, 438
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 3 cut(s) 80, 145, 743
PkrI GCNGC 4 cut(s) 507, 595, 598, 601
PleI GAGTC 1 cut(s) 845
PpsI GAGTC 1 cut(s) 845
PscI ACATGT 1 cut(s) 693
Psp124BI GAGCTC 1 cut(s) 421
PstI CTGCAG 1 cut(s) 510
RsaI GTAC 3 cut(s) 209, 405, 897
RsaNI GTAC 3 cut(s) 208, 404, 896
SacI GAGCTC 1 cut(s) 421
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 4 cut(s) 506, 594, 597, 600
Sau3AI GATC 2 cut(s) 85, 229
ScaI AGTACT 1 cut(s) 405
SchI GAGTC 1 cut(s) 846
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 2 cut(s) 506, 706
Sfr274I CTCGAG 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 148
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 6 cut(s) 30, 220, 332, 387, 638, 888
SsiI CCGC 3 cut(s) 497, 593, 597
SspMI CTAG 3 cut(s) 488, 752, 794
SstI GAGCTC 1 cut(s) 421
StyI CCWWGG 2 cut(s) 247, 269
TaaI ACNGT 3 cut(s) 207, 671, 900
TaiI ACGT 1 cut(s) 857
TaqI TCGA 8 cut(s) 9, 15, 127, 135, 143, 148, 375, 741
TaqII GACCGA 1 cut(s) 760
TasI AATT 6 cut(s) 30, 220, 332, 387, 638, 888
TatI WGTACW 2 cut(s) 403, 895
TauI GCSGC 2 cut(s) 596, 599
TfiI GAWTC 3 cut(s) 80, 145, 743
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 2 cut(s) 82, 674
TseFI GTSAC 2 cut(s) 775, 838
TseI GCWGC 2 cut(s) 505, 599
Tsp45I GTSAC 2 cut(s) 775, 838
TspDTI ATGAA 5 cut(s) 210, 335, 448, 460, 663
TspRI CASTG 2 cut(s) 82, 674
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 859
XhoI CTCGAG 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 3 cut(s) 488, 752, 794
ZrmI AGTACT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.