Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004311

Physical Location & Seq

Genomic Coordinates Reverse (-)

7956198 .. 7958326

Gene Structure 2129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCTGCAGAGGATCTATGGCACTGCATGGGAGAGTGAAGATCAATTGAAGGCATATCTTCATTTCAAAGAGGAAGCTAAACGTCGAGATCACAGGCGCCTTGGTCAAGTTCTTGACCTGTTTTCTATACAGAATGATGCTGGTGGGGGTTTAGTGTTCTGGCATCCAAAGGGTGCTATTGTGAGGCATGTAATGGAAGATTTGTGGAAAAAGATCCACATAGAACGTGGTTACGATCTGCTGTATACTCCACATGTTGCAAAGGCGAACCTTTGGCAGATAAGTGGTCATCTGGATTACTACAAGGAGAATATGTATGATCAAATGAATGTTGAGGATGAACTTTATCAGCTTCGACCGATGAACTGCCCCTATCATATCTTGGTTTACAAAAGGAAGCCTCACTCATATCATGAATTTCCTATTCGAGTTGCTGAGTTGGGAACTGTATATAGATACGAATTATCTGGAAGCTTGCATGGTCTTTTTCGTGTAAGAGGTTTTACTCAGGATGATGCCCACATATTTTGTCTAGAAGATCAGATCAAAGATGAAATTAGGGGTGTCCTAGATCTTACCGAAGAACTTTTGTTGCAATTCGGCTTCAACAAATATGAGGTCAATCTCTCTACGAGGCCAGAGAAAGCTGTTGGAGATGATGATATATGGGTGAAAGCAACATCTTCCCTTAGAGATGCTTTGGATGATAAAGGTTGGAGCTATCAAATTGATGAGGGTGGTGGTGCCTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCCCTTGGAAGGAAGTGGCAGTGCTCAACTATACAGGTTGATTTTAACCTACCTCAGCGTTTTGACATAACATATGTTGACTCAAACTCTGAAAAGAAGCGGCCTATCATGATTCATAGAGCTGTTCTTGGGTCATTGGAGCGGTTTTTTGGGGTCCTTATAGAGCATTATGCCGGGGATTTTCCATTATGGCTTTCACCAGTACAAGCTCATGTTTTACCAGTTACTGACTCTCAGCTTGATTACTGCAAAGAGGTAACCAACAAACTGAAAGCAAATGGTATTCGTGGTGAACTTTGCCAGGGTGAACGCCTGCCGAAACTGATTAGAAATTCAGAGATGCAGAAAATTCCATTGATGGCTGTTGTTGGTGCCAAGGAAGTTGAAACTGGCACTGTTACAGTAAGATCCAGGTTTGGTGGCGATCTTGGCACCATGCCAATTGATGATTTTGTCAGTACAATCAAGTCGGCCATTGAAAGCAAAGCGTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

427

Amino Acids

49.03

Weight (kDa)

6.04

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	112 - 318	7.1e-49	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	330 - 418	4.6e-20	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04842 AT2G04842
fragaria_vesca	FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340
malus_domestica	MD05G1333800.v1.1 MD09G1120400.v1.1 MD17G1111100.v1.1
prunus_persica	Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1
pyrus_communis	pycom05g23910 pycom05g24220 pycom05g30420 pycom09g04510 pycom15g36000 pycom17g10340
rosa_chinensis	RchiOBHm_Chr2g0156891
rosa_laevigata	RLG00000020950
rosa_multiflora	Rmu_ssc0000408.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092610
rosa_rugosa	Rorug02G0456900
rosa_samantha	Rh2AG522600 Rh2BG535900 Rh2CG507500 Rh2DG544900
rosa_wichuraiana	Rw2G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	96, 743, 1154, 1214
AccBSI	CCGCTC	1 cut(s)	925
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	2 cut(s)	883, 925
AclWI	GGATC	3 cut(s)	20, 208, 1185
AcoI	YGGCCR	1 cut(s)	1254
AcsI	RAATTY	3 cut(s)	416, 1114, 1131
AcyI	GRCGYC	1 cut(s)	97
AfaI	GTAC	2 cut(s)	987, 1243
AfiI	CCNNNNNNNGG	1 cut(s)	792
AflII	CTTAAG	1 cut(s)	770
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	5 cut(s)	49, 67, 607, 1169, 1262
AjnI	CCWGG	2 cut(s)	1083, 1193
AluBI	AGCT	8 cut(s)	77, 352, 474, 647, 720, 905, 992, 1021
AluI	AGCT	8 cut(s)	77, 352, 474, 647, 720, 905, 992, 1021
Alw21I	GWGCWC	1 cut(s)	809
AlwI	GGATC	3 cut(s)	20, 208, 1185
AlwNI	CAGNNNCTG	1 cut(s)	1010
AoxI	GGCC	3 cut(s)	635, 884, 1254
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	3 cut(s)	416, 1114, 1131
ArsI	GACNNNNNNTTYG	2 cut(s)	603, 635
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	755, 937
AsuC2I	CCSGG	1 cut(s)	958
AsuHPI	GGTGA	4 cut(s)	682, 972, 1085, 1100
AvaII	GGWCC	2 cut(s)	755, 937
BanI	GGYRCC	4 cut(s)	96, 743, 1154, 1214
Bbv12I	GWGCWC	1 cut(s)	809
BbvCI	CCTCAGC	1 cut(s)	837
BccI	CCATC	1 cut(s)	1135
BciT130I	CCWGG	2 cut(s)	1085, 1195
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	958
BfaI	CTAG	2 cut(s)	533, 569
BfmI	CTRYAG	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	100
BfrI	CTTAAG	1 cut(s)	770
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	2 cut(s)	5, 884
BlsI	GCNGC	2 cut(s)	6, 885
Bme1390I	CCNGG	3 cut(s)	958, 1085, 1195
Bme18I	GGWCC	2 cut(s)	755, 937
BmgT120I	GGNCC	2 cut(s)	755, 937
BmiI	GGNNCC	5 cut(s)	98, 745, 938, 1156, 1216
BmrFI	CCNGG	3 cut(s)	958, 1085, 1195
BmsI	GCATC	6 cut(s)	127, 172, 505, 685, 772, 1113
Bpu10I	CCTNAGC	1 cut(s)	837
BpuMI	CCSGG	1 cut(s)	958
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	5 cut(s)	100, 787, 957, 1084, 1158
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse1I	ACTGG	3 cut(s)	983, 1004, 1177
BseBI	CCWGG	2 cut(s)	1085, 1195
BseDI	CCNNGG	5 cut(s)	100, 787, 957, 1084, 1158
BseGI	GGATG	5 cut(s)	163, 343, 517, 709, 787
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMII	CTCAG	4 cut(s)	426, 521, 851, 1031
BseNI	ACTGG	3 cut(s)	983, 1004, 1177
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	3 cut(s)	637, 886, 1256
BshNI	GGYRCC	4 cut(s)	96, 743, 1154, 1214
BsiEI	CGRYCG	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	809
BsiSI	CCGG	1 cut(s)	957
BslI	CCNNNNNNNGG	1 cut(s)	792
BsnI	GGCC	3 cut(s)	637, 886, 1256
Bsp1286I	GDGCHC	1 cut(s)	809
BspACI	CCGC	2 cut(s)	883, 925
BspANI	GGCC	3 cut(s)	637, 886, 1256
BspCNI	CTCAG	4 cut(s)	427, 520, 850, 1030
BspHI	TCATGA	2 cut(s)	412, 891
BspLI	GGNNCC	5 cut(s)	98, 745, 938, 1156, 1216
BspMAI	CTGCAG	1 cut(s)	9
BspPI	GGATC	3 cut(s)	20, 208, 1185
BspT107I	GGYRCC	4 cut(s)	96, 743, 1154, 1214
BspTI	CTTAAG	1 cut(s)	770
BsrBI	CCGCTC	1 cut(s)	925
BsrI	ACTGG	3 cut(s)	983, 1004, 1177
BssECI	CCNNGG	5 cut(s)	100, 787, 957, 1084, 1158
BssNAI	GTATAC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	97
BssT1I	CCWWGG	3 cut(s)	100, 787, 1158
Bst1107I	GTATAC	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	1085, 1195
Bst4CI	ACNGT	3 cut(s)	448, 1180, 1186
BstACI	GRCGYC	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	770
BstC8I	GCNNGC	2 cut(s)	476, 1097
BstDEI	CTNAG	5 cut(s)	435, 507, 689, 837, 1017
BstEII	GGTNACC	1 cut(s)	1039
BstF5I	GGATG	5 cut(s)	163, 343, 517, 709, 787
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	1212
BstNI	CCWGG	2 cut(s)	1085, 1195
BstNSI	RCATGY	2 cut(s)	191, 257
BstPI	GGTNACC	1 cut(s)	1039
BstSCI	CCNGG	3 cut(s)	956, 1083, 1193
BstSFI	CTRYAG	1 cut(s)	5
BstX2I	RGATCY	4 cut(s)	12, 213, 571, 1190
BstYI	RGATCY	4 cut(s)	12, 213, 571, 1190
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	637, 886, 1256
BtsCI	GGATG	5 cut(s)	163, 343, 517, 709, 787
BtsI	GCAGTG	2 cut(s)	21, 809
BtsIMutI	CAGTG	3 cut(s)	21, 809, 1176
Cac8I	GCNNGC	2 cut(s)	476, 1097
CaiI	CAGNNNCTG	1 cut(s)	1010
CciI	TCATGA	2 cut(s)	412, 891
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	755, 937
CseI	GACGC	1 cut(s)	1260
Csp6I	GTAC	2 cut(s)	986, 1242
CspCI	CAANNNNNGTGG	2 cut(s)	509, 544
CviAII	CATG	8 cut(s)	27, 188, 254, 413, 479, 892, 995, 1219
CviQI	GTAC	2 cut(s)	986, 1242
DdeI	CTNAG	5 cut(s)	435, 507, 689, 837, 1017
DinI	GGCGCC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	1254
Eco130I	CCWWGG	3 cut(s)	100, 787, 1158
Eco47I	GGWCC	2 cut(s)	755, 937
Eco91I	GGTNACC	1 cut(s)	1039
EcoO109I	RGGNCCY	1 cut(s)	937
EcoO65I	GGTNACC	1 cut(s)	1039
EcoRII	CCWGG	2 cut(s)	1083, 1193
EcoT14I	CCWWGG	3 cut(s)	100, 787, 1158
EgeI	GGCGCC	1 cut(s)	98
EheI	GGCGCC	1 cut(s)	98
ErhI	CCWWGG	3 cut(s)	100, 787, 1158
FaeI	CATG	8 cut(s)	30, 191, 257, 416, 482, 895, 998, 1222
FatI	CATG	8 cut(s)	26, 187, 253, 412, 478, 891, 994, 1218
FauNDI	CATATG	1 cut(s)	856
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	2 cut(s)	5, 884
FokI	GGATG	5 cut(s)	150, 350, 524, 716, 794
Fsp4HI	GCNGC	2 cut(s)	5, 884
FspBI	CTAG	2 cut(s)	533, 569
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	5, 884
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	637, 886, 1256
HapII	CCGG	1 cut(s)	957
HgaI	GACGC	1 cut(s)	1260
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	8 cut(s)	30, 191, 257, 416, 482, 895, 998, 1222
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	472
HinfI	GANTC	3 cut(s)	863, 895, 1013
HpaII	CCGG	1 cut(s)	957
HphI	GGTGA	4 cut(s)	682, 972, 1085, 1100
Hpy166II	GTNNAC	5 cut(s)	246, 388, 862, 1076, 1091
Hpy188I	TCNGA	3 cut(s)	543, 874, 1120
Hpy188III	TCNNGA	8 cut(s)	86, 113, 293, 413, 468, 509, 533, 892
Hpy8I	GTNNAC	5 cut(s)	246, 388, 862, 1076, 1091
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	43, 786
HpyCH4III	ACNGT	3 cut(s)	448, 1180, 1186
HpyCH4IV	ACGT	2 cut(s)	82, 226
HpyCH4V	TGCA	7 cut(s)	7, 26, 260, 478, 595, 1032, 1126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1212
HpyF3I	CTNAG	5 cut(s)	435, 507, 689, 837, 1017
HpySE526I	ACGT	2 cut(s)	82, 226
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	8 cut(s)	30, 191, 257, 416, 482, 895, 998, 1222
HspAI	GCGC	1 cut(s)	97
KasI	GGCGCC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	717, 922
LweI	GCATC	6 cut(s)	127, 172, 505, 685, 772, 1113
MaeI	CTAG	2 cut(s)	533, 569
MaeII	ACGT	2 cut(s)	82, 226
MaeIII	GTNAC	4 cut(s)	230, 1006, 1039, 1180
MbiI	CCGCTC	1 cut(s)	925
MboII	GAAGA	6 cut(s)	50, 50, 209, 548, 593, 675
MfeI	CAATTG	2 cut(s)	44, 1224
MflI	RGATCY	4 cut(s)	12, 213, 571, 1190
MhlI	GDGCHC	1 cut(s)	809
Mly113I	GGCGCC	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	857, 1007
MmeI	TCCRAC	2 cut(s)	631, 695
MseI	TTAA	2 cut(s)	771, 828
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	1 cut(s)	957
MspR9I	CCNGG	3 cut(s)	958, 1085, 1195
MunI	CAATTG	2 cut(s)	44, 1224
MvaI	CCWGG	2 cut(s)	1085, 1195
MwoI	GCNNNNNNNGC	1 cut(s)	1212
NarI	GGCGCC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	958
NdeI	CATATG	1 cut(s)	856
NlaIII	CATG	8 cut(s)	30, 191, 257, 416, 482, 895, 998, 1222
NlaIV	GGNNCC	5 cut(s)	98, 745, 938, 1156, 1216
NspI	RCATGY	2 cut(s)	191, 257
PagI	TCATGA	2 cut(s)	412, 891
PciI	ACATGT	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	895
PkrI	GCNGC	2 cut(s)	6, 885
PleI	GAGTC	2 cut(s)	857, 1007
PluTI	GGCGCC	1 cut(s)	100
PpsI	GAGTC	2 cut(s)	857, 1007
PpuMI	RGGWCCY	1 cut(s)	937
PscI	ACATGT	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	937
Psp6I	CCWGG	2 cut(s)	1083, 1193
PspEI	GGTNACC	1 cut(s)	1039
PspGI	CCWGG	2 cut(s)	1083, 1193
PspN4I	GGNNCC	5 cut(s)	98, 745, 938, 1156, 1216
PspPI	GGNCC	2 cut(s)	755, 937
PspPPI	RGGWCCY	1 cut(s)	937
PstI	CTGCAG	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	4 cut(s)	12, 213, 571, 1190
RsaI	GTAC	2 cut(s)	987, 1243
RsaNI	GTAC	2 cut(s)	986, 1242
SaqAI	TTAA	2 cut(s)	771, 828
SatI	GCNGC	2 cut(s)	5, 884
Sau96I	GGNCC	2 cut(s)	755, 937
SchI	GAGTC	2 cut(s)	857, 1007
ScrFI	CCNGG	3 cut(s)	958, 1085, 1195
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	6 cut(s)	127, 172, 505, 685, 772, 1113
SfcI	CTRYAG	1 cut(s)	5
SfoI	GGCGCC	1 cut(s)	98
SinI	GGWCC	2 cut(s)	755, 937
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SsiI	CCGC	2 cut(s)	883, 925
SspDI	GGCGCC	1 cut(s)	96
SspMI	CTAG	2 cut(s)	533, 569
StyD4I	CCNGG	3 cut(s)	956, 1083, 1193
StyI	CCWWGG	3 cut(s)	100, 787, 1158
TaaI	ACNGT	3 cut(s)	448, 1180, 1186
TaiI	ACGT	2 cut(s)	85, 229
TaqI	TCGA	3 cut(s)	85, 355, 427
TaqII	GACCGA	1 cut(s)	373
TatI	WGTACW	2 cut(s)	985, 1241
TauI	GCSGC	1 cut(s)	886
TfiI	GAWTC	1 cut(s)	895
Tru1I	TTAA	2 cut(s)	771, 828
Tru9I	TTAA	2 cut(s)	771, 828
TscAI	CASTG	3 cut(s)	28, 809, 1183
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	7 cut(s)	50, 341, 354, 377, 429, 567, 887
TspRI	CASTG	3 cut(s)	28, 809, 1183
Vha464I	CTTAAG	1 cut(s)	770
VpaK11BI	GGWCC	2 cut(s)	755, 937
XapI	RAATTY	3 cut(s)	416, 1114, 1131
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	2 cut(s)	191, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	2 cut(s)	533, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.