pycom17g10840

RPM1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0005965
Physical Location & Seq
Forward (+)
8434212 .. 8435384
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGATTGATTCCCTTAATCAAAATTATGTAAATCCACAGGAAAAGGGTGTACCGTTGCCAAAATTTGGTGAATGGGATGTCAATGATCCAGCATCAGCTGAGGGATTCACTGTAATCTTCAACAAGGCTAGGACTGAGAAGAAGACAGGTGGCAGACCTGACTCACCATCAAAGGAGGATCACACATATAAGCATGAAGCAGTTCTCGGAAAGCCTCCATCTAAAAAATGGTTTTGCTGCTTGCGTGCGGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

86

Amino Acids

9.55

Weight (kDa)

7.77

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 14 - 48 3.6e-20 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 1 cut(s) 248
AclWI GGATC 2 cut(s) 80, 186
AcsI RAATTY 1 cut(s) 62
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 2 cut(s) 80, 186
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 80, 156
BbsI GAAGAC 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 175, 226
BfaI CTAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
BmsI GCATC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 2 cut(s) 90, 126
BseXI GCAGC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 65
Bsp143I GATC 2 cut(s) 85, 178
BspACI CCGC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 91, 127
BspHI TCATGA 1 cut(s) 254
BspPI GGATC 2 cut(s) 80, 186
BssMI GATC 2 cut(s) 85, 178
Bst4CI ACNGT 2 cut(s) 54, 112
BstC8I GCNNGC 2 cut(s) 242, 246
BstDEI CTNAG 2 cut(s) 99, 135
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 2 cut(s) 88, 181
BstMBI GATC 2 cut(s) 85, 178
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 242, 246
CciI TCATGA 1 cut(s) 254
Csp6I GTAC 1 cut(s) 50
CviAII CATG 2 cut(s) 194, 255
CviJI RGCY 3 cut(s) 98, 128, 214
CviKI_1 RGCY 3 cut(s) 98, 128, 214
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 2 cut(s) 99, 135
DpnI GATC 2 cut(s) 87, 180
DpnII GATC 2 cut(s) 85, 178
FaeI CATG 2 cut(s) 197, 258
FaiI YATR 5 cut(s) 27, 187, 189, 195, 256
FatI CATG 2 cut(s) 193, 254
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 197, 258
HinfI GANTC 4 cut(s) 8, 105, 161, 251
HphI GGTGA 2 cut(s) 80, 156
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 255
Hpy8I GTNNAC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 54, 112
HpyF3I CTNAG 2 cut(s) 99, 135
Hsp92II CATG 2 cut(s) 197, 258
Kzo9I GATC 2 cut(s) 85, 178
LpnPI CCDG 4 cut(s) 23, 102, 132, 171
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 129
MalI GATC 2 cut(s) 87, 180
MboI GATC 2 cut(s) 85, 178
MboII GAAGA 3 cut(s) 109, 151, 154
MluCI AATT 2 cut(s) 22, 62
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 3 cut(s) 94, 169, 225
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 98
NdeII GATC 2 cut(s) 85, 178
NlaIII CATG 2 cut(s) 197, 258
PagI TCATGA 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 8, 105
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 2 cut(s) 85, 178
SchI GAGTC 1 cut(s) 155
SetI ASST 3 cut(s) 100, 151, 160
SfaNI GCATC 1 cut(s) 101
SgeI CNNG 9 cut(s) 50, 101, 136, 141, 159, 170, 206, 218, 253
Sse9I AATT 2 cut(s) 22, 62
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 54, 112
TasI AATT 2 cut(s) 22, 62
TfiI GAWTC 2 cut(s) 8, 105
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 65
XapI RAATTY 1 cut(s) 62
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.