pycom17g10920

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0008308
Physical Location & Seq
Forward (+)
8489714 .. 8492301
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1206 bp
ATGATAAACGGAAACTCCTCTGCTGGTACAGAGAGAGATGGGGGAGGAGGAGCAAACCTCGGTGGGAGTGGGAGAAGGAGAAGAAGTGGAAGAGAAGGAGGAGGAGGCAGAGACATGGAACCAAAGGAAACAAACCCTTATACTCGAAATCTCCTCGAAGCTCATCCATGGCGATCGATCGAATCCAAGATTGAAGCCGCCAGAGATATCAGAAACTTGGTCAGAAAGTCTTCCACTTCGTCCTCGTCTTCCAAGACTCGCTCGAAGCTGGGCGCGGCGGGCGTGATTCCGCCGCTGGTGTTGATGCTCTGCTCTCCTAATCCAGATGCGCGCCAAGTTTCCCTCCTCGCGCTCCTCAACCTTGCTGTCCGAAACGAACGGAATAAGGTCAAGATTGTGATGGCCGGAGCCCTCCCCCCGCTTGTTGAGCTCCTCAAGTTCCAAAATGGTAGTTTAAGGGATTTAGCAACTGCGGCAATCTTAACACTCTCAGCTGCTGCACTGAACAAGCCAATCATTGCAGATTCAGGAGCTGCGCCTCTCCTGGTTGAGATCCTCAGCTCCGGAAGTGTTCAAGGAAAAGTTGATGCTGTGACTGCCTTACACAATCTCTCCACCTGCAAAGAGAACTCAACTACCATTCTGGATGCTACAGCCGTTCGTCCTCTTATCAACCTCCTCAAAGAATGCAAAAAGTACTCCAAGTTTGCCGAAAAAACTACTGCCCTTCTCGAGATCCTATCCAACTCTGAAGAAGGACGTACTGCAATCTCAAACACAGAAGGTGGGATATTAACCTTAGTAGAGACTGTTGAAGATGGATCCCTAATCAGCACACAACACGCGGTTGGAGCATTGCTCTCCATGTGTCAGAGCTGCCGCGACAAATACAGGGAACTCATTCTTAACGAAGGTGCAGTCCCAGGTCTTCTTCGACTGACAGTAGATGGCACAGCTGAAGCCCGGGATAGAGCTCGTATGCTGCTAGACTTGCTTAGAGATTCTCCCCAGCAAAAGCAACTGGCATCCTCCGTTTTAGAGAGAATTGTATACGACATTGCCACAAGGGTAGATGGAGCGGACAAAGCAGCTGAAACCGCAAAGAGGTTATTGGAAGACATGGTTAAAAGAAGCATGGAGCATAGCATGAACCGAATCGAGCAGAGAGCTGCATCTTGTCCACCTTCGAATACGCAGTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

402

Amino Acids

42.93

Weight (kDa)

9.19

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 163 - 318 2.2e-09 ARMC5
ARM_PUB PF25598 197 - 343 1.2e-16 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 626
AccBSI CCGCTC 1 cut(s) 1079
AccI GTMKAC 1 cut(s) 1050
AccII CGCG 5 cut(s) 275, 331, 350, 845, 882
AccIII TCCGGA 1 cut(s) 563
AclWI GGATC 4 cut(s) 547, 730, 816, 829
AcoI YGGCCR 1 cut(s) 402
AcuI CTGAAG 2 cut(s) 771, 978
AfaI GTAC 3 cut(s) 28, 698, 763
AfiI CCNNNNNNNGG 1 cut(s) 1104
AgsI TTSAA 3 cut(s) 194, 575, 815
AjnI CCWGG 2 cut(s) 543, 922
Alw21I GWGCWC 2 cut(s) 432, 976
Alw26I GTCTC 2 cut(s) 105, 800
AlwI GGATC 4 cut(s) 547, 730, 816, 829
AlwNI CAGNNNCTG 2 cut(s) 497, 533
Ama87I CYCGRG 2 cut(s) 731, 963
Aor13HI TCCGGA 1 cut(s) 563
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 7 cut(s) 494, 497, 533, 876, 982, 1088, 1169
ArsI GACNNNNNNTTYG 3 cut(s) 903, 935, 1181
Asp700I GAANNNNTTC 2 cut(s) 229, 900
AspLEI GCGC 5 cut(s) 275, 331, 333, 352, 538
AsuC2I CCSGG 2 cut(s) 964, 965
AsuII TTCGAA 1 cut(s) 1187
AvaI CYCGRG 2 cut(s) 731, 963
BamHI GGATCC 1 cut(s) 821
BanII GRGCYC 3 cut(s) 412, 432, 976
BbsI GAAGAC 4 cut(s) 222, 240, 920, 1122
Bbv12I GWGCWC 2 cut(s) 432, 976
BbvCI CCTCAGC 1 cut(s) 557
BbvI GCAGC 7 cut(s) 481, 484, 520, 863, 969, 1100, 1156
BccI CCATC 5 cut(s) 32, 394, 812, 941, 1067
BceAI ACGGC 1 cut(s) 641
BciT130I CCWGG 2 cut(s) 545, 924
BcnI CCSGG 2 cut(s) 964, 965
BcoDI GTCTC 2 cut(s) 105, 800
BfaI CTAG 1 cut(s) 986
BfmI CTRYAG 1 cut(s) 651
BfuAI ACCTGC 1 cut(s) 626
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 4 cut(s) 545, 924, 964, 965
BmeT110I CYCGRG 2 cut(s) 731, 963
BmiI GGNNCC 3 cut(s) 120, 409, 823
BmrFI CCNGG 4 cut(s) 545, 924, 964, 965
BmsI GCATC 6 cut(s) 294, 316, 577, 637, 1034, 1181
BpiI GAAGAC 4 cut(s) 222, 240, 920, 1122
BplI GAGNNNNNCTC 4 cut(s) 42, 74, 843, 875
Bpu10I CCTNAGC 1 cut(s) 557
Bpu14I TTCGAA 1 cut(s) 1187
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 964, 965
Bsa29I ATCGAT 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 58, 167, 922, 963
BsaWI WCCGGW 1 cut(s) 563
BsaXI ACNNNNNCTCC 5 cut(s) 29, 70, 100, 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 1104
Bse1I ACTGG 1 cut(s) 1026
Bse3DI GCAATG 3 cut(s) 516, 854, 1056
BseAI TCCGGA 1 cut(s) 563
BseBI CCWGG 2 cut(s) 545, 924
BseCI ATCGAT 1 cut(s) 176
BseDI CCNNGG 4 cut(s) 58, 167, 922, 963
BseGI GGATG 3 cut(s) 163, 652, 1025
BseLI CCNNNNNNNGG 1 cut(s) 1104
BseMI GCAATG 3 cut(s) 516, 854, 1056
BseMII CTCAG 2 cut(s) 504, 571
BseNI ACTGG 1 cut(s) 1026
BsePI GCGCGC 1 cut(s) 329
BseXI GCAGC 7 cut(s) 481, 484, 520, 863, 969, 1100, 1156
BseYI CCCAGC 2 cut(s) 268, 1008
BsgI GTGCAG 2 cut(s) 483, 936
Bsh1236I CGCG 5 cut(s) 275, 331, 350, 845, 882
Bsh1285I CGRYCG 2 cut(s) 176, 180
BshFI GGCC 1 cut(s) 404
BshVI ATCGAT 1 cut(s) 176
BsiEI CGRYCG 2 cut(s) 176, 180
BsiHKAI GWGCWC 2 cut(s) 432, 976
BsiHKCI CYCGRG 2 cut(s) 731, 963
BsiSI CCGG 3 cut(s) 405, 564, 964
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 1 cut(s) 1104
BsmAI GTCTC 2 cut(s) 105, 800
BsmFI GGGAC 1 cut(s) 905
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 1 cut(s) 404
BsoBI CYCGRG 2 cut(s) 731, 963
Bsp119I TTCGAA 1 cut(s) 1187
Bsp1286I GDGCHC 3 cut(s) 412, 432, 976
Bsp13I TCCGGA 1 cut(s) 563
Bsp143I GATC 5 cut(s) 173, 177, 552, 735, 821
Bsp19I CCATGG 1 cut(s) 167
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 2 cut(s) 503, 570
BspDI ATCGAT 1 cut(s) 176
BspEI TCCGGA 1 cut(s) 563
BspFNI CGCG 5 cut(s) 275, 331, 350, 845, 882
BspLI GGNNCC 3 cut(s) 120, 409, 823
BspMI ACCTGC 1 cut(s) 626
BspPI GGATC 4 cut(s) 547, 730, 816, 829
BspT104I TTCGAA 1 cut(s) 1187
BsrBI CCGCTC 1 cut(s) 1079
BsrDI GCAATG 3 cut(s) 516, 854, 1056
BsrI ACTGG 1 cut(s) 1026
BssECI CCNNGG 4 cut(s) 58, 167, 922, 963
BssHII GCGCGC 1 cut(s) 329
BssMI GATC 5 cut(s) 173, 177, 552, 735, 821
BssNAI GTATAC 1 cut(s) 1051
BssT1I CCWWGG 1 cut(s) 167
Bst1107I GTATAC 1 cut(s) 1051
Bst2UI CCWGG 2 cut(s) 545, 924
Bst4CI ACNGT 2 cut(s) 811, 943
Bst6I CTCTTC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 1187
BstC8I GCNNGC 2 cut(s) 280, 331
BstDEI CTNAG 4 cut(s) 490, 557, 799, 995
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 163, 652, 1025
BstFNI CGCG 5 cut(s) 275, 331, 350, 845, 882
BstHHI GCGC 5 cut(s) 275, 331, 333, 352, 538
BstKTI GATC 5 cut(s) 176, 180, 555, 738, 824
BstMAI GTCTC 2 cut(s) 105, 800
BstMBI GATC 5 cut(s) 173, 177, 552, 735, 821
BstMCI CGRYCG 2 cut(s) 176, 180
BstMWI GCNNNNNNNGC 8 cut(s) 279, 427, 473, 596, 851, 991, 1085, 1097
BstNI CCWGG 2 cut(s) 545, 924
BstSCI CCNGG 4 cut(s) 543, 922, 962, 963
BstSFI CTRYAG 1 cut(s) 651
BstUI CGCG 5 cut(s) 275, 331, 350, 845, 882
BstV1I GCAGC 7 cut(s) 481, 484, 520, 863, 969, 1100, 1156
BstV2I GAAGAC 4 cut(s) 222, 240, 920, 1122
BstX2I RGATCY 3 cut(s) 552, 735, 821
BstYI RGATCY 3 cut(s) 552, 735, 821
BstZ17I GTATAC 1 cut(s) 1051
Bsu15I ATCGAT 1 cut(s) 176
BsuRI GGCC 1 cut(s) 404
BsuTUI ATCGAT 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 3 cut(s) 163, 652, 1025
BtsIMutI CAGTG 1 cut(s) 500
BveI ACCTGC 1 cut(s) 626
Cac8I GCNNGC 2 cut(s) 280, 331
CaiI CAGNNNCTG 2 cut(s) 497, 533
CfoI GCGC 5 cut(s) 275, 331, 333, 352, 538
Cfr9I CCCGGG 1 cut(s) 963
ClaI ATCGAT 1 cut(s) 176
Csp6I GTAC 3 cut(s) 27, 697, 762
CviAII CATG 6 cut(s) 115, 168, 865, 1120, 1135, 1147
CviQI GTAC 3 cut(s) 27, 697, 762
DdeI CTNAG 4 cut(s) 490, 557, 799, 995
DpnI GATC 5 cut(s) 175, 179, 554, 737, 823
DpnII GATC 5 cut(s) 173, 177, 552, 735, 821
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 279
Ecl136II GAGCTC 2 cut(s) 430, 974
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 3 cut(s) 412, 432, 976
Eco32I GATATC 1 cut(s) 208
Eco53kI GAGCTC 2 cut(s) 430, 974
Eco57I CTGAAG 2 cut(s) 771, 978
Eco88I CYCGRG 2 cut(s) 731, 963
EcoICRI GAGCTC 2 cut(s) 430, 974
EcoRII CCWGG 2 cut(s) 543, 922
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 3 cut(s) 412, 432, 976
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 6 cut(s) 118, 171, 868, 1123, 1138, 1150
FaqI GGGAC 1 cut(s) 905
FatI CATG 6 cut(s) 114, 167, 864, 1119, 1134, 1146
FauI CCCGC 2 cut(s) 271, 426
FblI GTMKAC 1 cut(s) 1050
FokI GGATG 3 cut(s) 150, 659, 1012
FriOI GRGCYC 3 cut(s) 412, 432, 976
FspBI CTAG 1 cut(s) 986
GlaI GCGC 5 cut(s) 274, 330, 332, 351, 537
GsaI CCCAGC 2 cut(s) 272, 1012
HaeIII GGCC 1 cut(s) 404
HapII CCGG 3 cut(s) 405, 564, 964
HhaI GCGC 5 cut(s) 275, 331, 333, 352, 538
Hin1II CATG 6 cut(s) 118, 171, 868, 1123, 1138, 1150
Hin6I GCGC 5 cut(s) 273, 329, 331, 350, 536
HinP1I GCGC 5 cut(s) 273, 329, 331, 350, 536
HinfI GANTC 6 cut(s) 182, 256, 286, 524, 1001, 1155
HpaII CCGG 3 cut(s) 405, 564, 964
Hpy166II GTNNAC 2 cut(s) 1051, 1181
Hpy188I TCNGA 5 cut(s) 212, 224, 371, 751, 873
Hpy188III TCNNGA 7 cut(s) 323, 391, 528, 564, 644, 731, 733
Hpy8I GTNNAC 2 cut(s) 1051, 1181
HpyAV CCTTC 7 cut(s) 69, 89, 737, 749, 776, 905, 1194
HpyCH4III ACNGT 2 cut(s) 811, 943
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 7 cut(s) 500, 521, 621, 690, 767, 917, 1172
HpyF10VI GCNNNNNNNGC 8 cut(s) 279, 427, 473, 596, 851, 991, 1085, 1097
HpyF3I CTNAG 4 cut(s) 490, 557, 799, 995
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 6 cut(s) 118, 171, 868, 1123, 1138, 1150
HspAI GCGC 5 cut(s) 273, 329, 331, 350, 536
Kpn2I TCCGGA 1 cut(s) 563
Kzo9I GATC 5 cut(s) 173, 177, 552, 735, 821
LmnI GCTCC 9 cut(s) 50, 357, 407, 435, 530, 566, 851, 1076, 1138
Lsp1109I GCAGC 7 cut(s) 481, 484, 520, 863, 969, 1100, 1156
LweI GCATC 6 cut(s) 294, 316, 577, 637, 1034, 1181
MaeI CTAG 1 cut(s) 986
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 1 cut(s) 592
MalI GATC 5 cut(s) 175, 179, 554, 737, 823
MbiI CCGCTC 1 cut(s) 1079
MboI GATC 5 cut(s) 173, 177, 552, 735, 821
MboII GAAGA 9 cut(s) 93, 102, 222, 240, 764, 827, 920, 923, 1127
MflI RGATCY 3 cut(s) 552, 735, 821
MhlI GDGCHC 3 cut(s) 412, 432, 976
MluCI AATT 1 cut(s) 1044
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 2 cut(s) 768, 829
MroI TCCGGA 1 cut(s) 563
MroXI GAANNNNTTC 2 cut(s) 229, 900
MseI TTAA 5 cut(s) 455, 482, 794, 906, 1125
MspA1I CMGCKG 4 cut(s) 295, 494, 956, 1091
MspI CCGG 3 cut(s) 405, 564, 964
MspR9I CCNGG 4 cut(s) 545, 924, 964, 965
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 2 cut(s) 545, 924
MvnI CGCG 5 cut(s) 275, 331, 350, 845, 882
MwoI GCNNNNNNNGC 8 cut(s) 279, 427, 473, 596, 851, 991, 1085, 1097
NciI CCSGG 2 cut(s) 964, 965
NcoI CCATGG 1 cut(s) 167
NdeII GATC 5 cut(s) 173, 177, 552, 735, 821
NlaIII CATG 6 cut(s) 118, 171, 868, 1123, 1138, 1150
NlaIV GGNNCC 3 cut(s) 120, 409, 823
NmuCI GTSAC 1 cut(s) 592
NspV TTCGAA 1 cut(s) 1187
PaeR7I CTCGAG 1 cut(s) 731
PaqCI CACCTGC 1 cut(s) 626
PauI GCGCGC 1 cut(s) 329
PctI GAATGC 1 cut(s) 692
PdmI GAANNNNTTC 2 cut(s) 229, 900
PfeI GAWTC 5 cut(s) 182, 286, 524, 1001, 1155
Ple19I CGATCG 2 cut(s) 176, 180
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp124BI GAGCTC 2 cut(s) 432, 976
Psp6I CCWGG 2 cut(s) 543, 922
PspFI CCCAGC 2 cut(s) 268, 1008
PspGI CCWGG 2 cut(s) 543, 922
PspN4I GGNNCC 3 cut(s) 120, 409, 823
PstNI CAGNNNCTG 2 cut(s) 497, 533
PsuI RGATCY 3 cut(s) 552, 735, 821
PteI GCGCGC 1 cut(s) 329
PvuI CGATCG 2 cut(s) 176, 180
PvuII CAGCTG 3 cut(s) 494, 956, 1091
RsaI GTAC 3 cut(s) 28, 698, 763
RsaNI GTAC 3 cut(s) 27, 697, 762
SacI GAGCTC 2 cut(s) 432, 976
SaqAI TTAA 5 cut(s) 455, 482, 794, 906, 1125
Sau3AI GATC 5 cut(s) 173, 177, 552, 735, 821
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 4 cut(s) 545, 924, 964, 965
SduI GDGCHC 3 cut(s) 412, 432, 976
SfaNI GCATC 6 cut(s) 294, 316, 577, 637, 1034, 1181
SfcI CTRYAG 1 cut(s) 651
Sfr274I CTCGAG 1 cut(s) 731
SfuI TTCGAA 1 cut(s) 1187
SlaI CTCGAG 1 cut(s) 731
SmaI CCCGGG 1 cut(s) 965
SmlI CTYRAG 2 cut(s) 434, 731
SmoI CTYRAG 2 cut(s) 434, 731
Sse9I AATT 1 cut(s) 1044
SspMI CTAG 1 cut(s) 986
SstI GAGCTC 2 cut(s) 432, 976
StyD4I CCNGG 4 cut(s) 543, 922, 962, 963
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 811, 943
TaiI ACGT 1 cut(s) 763
TaqI TCGA 9 cut(s) 145, 156, 176, 180, 263, 732, 934, 1158, 1187
TasI AATT 1 cut(s) 1044
TatI WGTACW 1 cut(s) 696
TauI GCSGC 5 cut(s) 200, 278, 295, 476, 882
TfiI GAWTC 5 cut(s) 182, 286, 524, 1001, 1155
Tru1I TTAA 5 cut(s) 455, 482, 794, 906, 1125
Tru9I TTAA 5 cut(s) 455, 482, 794, 906, 1125
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 7 cut(s) 494, 497, 533, 876, 982, 1088, 1169
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 1 cut(s) 1163
TspGWI ACGGA 3 cut(s) 24, 394, 1021
TspMI CCCGGG 1 cut(s) 963
TspRI CASTG 1 cut(s) 507
XhoI CTCGAG 1 cut(s) 731
XmaI CCCGGG 1 cut(s) 963
XmiI GTMKAC 1 cut(s) 1050
XmnI GAANNNNTTC 2 cut(s) 229, 900
XspI CTAG 1 cut(s) 986
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.