pycom17g11470

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006758
Physical Location & Seq
Forward (+)
9075894 .. 9078018
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1242 bp
ATGGGGTCTGAACTACGACTATCAGAAGATATGTATGATCATCAGGGTAGTCCTAAAGGAGAGAAATATGTTTATTTACATTATTATTCACAGAGATTTCGTCAGACAAGTCAACCTTATGAAGAACCATGGGATTTGCCAGAAGATATTCATTACTTTCGTGGGGTGAAGAAAATGAAGACAGAGTCTTTTCTTTCAAACAAAGAGCTTCCAGAGTATCCCCAATCTGACTGCAACCCAGAAAGACATGAATTTTCTAGGTCATACTCTGATTTTTCCCAAGCTGACAGTTCCAATAGAAACTTTGAGGGTGGGCCTTTTGGTTACAACCAGTTACCTTATCAACCAATGAATCTACCTCTAGCTCTAGGAGAAAGGGGTGACCGCTGGAAAGAATCTTATGACGATTTTGAGGTAAGCTTGGGTTCTCAGATAGCAAATCCTGTTGATAGGAGAAGGTTCACTCCTGAATCAGATGAGCCTTCTTTCAACGTGTGGAAATGGGAAGGGACTATAGCAAAGGGAGGAACTCCTGTCAGTCATGCTCGTTGCTTTCCTGTGGGCAAACTCCTTGACATCACTTTGCCTGAATTTTTGGATTGTACTGCAAGGACTGGTCTAGACATGCTTTCGAAGCATTACTATCAAGCAGCAAGTGCTTGGGTTGTGTTCTTTGCCCCTCAAAGTGATGCTGATTTTGGATACTACAATGAATTTATGCATTATCTTGGGGAAAAGCAGCGAGCAGCCGTTGCGAAGTTAGATGACAAGAATACCTTGTTTCTTGTGCCCCCATCGGACTTCTCAGAGAAAGTGCTGAAGGTACCAGGGAAACTCAGCATCTCCGGTGTTGTTTTGAGGTTAGAGAATCCTAGTTCCAATTTTCGATCCCCTCATCAAGAACCTGAAAGAAAAGATATGAGATTATTGTCATTGCCTCAGGACACATCATATACAAAGCCATCAACACCTTCAGAATCTATTCATTCATTTACATCAGCTCCACGGGTGTCATTTTCAGGTTCAGCTCATGGTGTTGGAAATGGATCTGATTCTTACAATGAGAACAGGCATGAGTATCCGCATCATATGGAAAGCTCTGCATTGGGGCCAAACTGGTCTTCACTCAACACACAGAACTCAATTACAGATACGAGAAATAGACCAACCCAATGCCCAATAGTGTCGCTGATTCTAATTTTCAGGAGCATAGGGTCATGCAAGGGGAAGCACAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

414

Amino Acids

47.01

Weight (kDa)

5.98

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC PF07744 166 - 281 2.7e-23 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 823
AccB1I GGYRCC 1 cut(s) 823
AciI CCGC 2 cut(s) 385, 1082
AclWI GGATC 2 cut(s) 882, 1054
AcsI RAATTY 3 cut(s) 251, 590, 713
AcuI CTGAAG 2 cut(s) 839, 957
AfaI GTAC 2 cut(s) 604, 825
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 2 cut(s) 198, 490
AjnI CCWGG 1 cut(s) 826
AjuI GAANNNNNNNTTGG 2 cut(s) 1105, 1137
AluBI AGCT 7 cut(s) 208, 284, 365, 420, 1001, 1028, 1098
AluI AGCT 7 cut(s) 208, 284, 365, 420, 1001, 1028, 1098
AlwI GGATC 2 cut(s) 882, 1054
AoxI GGCC 2 cut(s) 314, 1109
ApeKI GCWGC 3 cut(s) 650, 739, 746
ApoI RAATTY 3 cut(s) 251, 590, 713
Asp700I GAANNNNTTC 2 cut(s) 147, 981
Asp718I GGTACC 1 cut(s) 823
AspS9I GGNCC 2 cut(s) 314, 1109
AsuHPI GGTGA 2 cut(s) 178, 392
AsuII TTCGAA 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 939
BaeGI GKGCMC 1 cut(s) 792
BanI GGYRCC 1 cut(s) 823
BbsI GAAGAC 2 cut(s) 185, 1113
BbvI GCAGC 3 cut(s) 662, 751, 758
BccI CCATC 2 cut(s) 802, 970
BceAI ACGGC 1 cut(s) 734
BciT130I CCWGG 1 cut(s) 828
BciVI GTATCC 3 cut(s) 228, 695, 1089
BclI TGATCA 1 cut(s) 37
BfaI CTAG 5 cut(s) 258, 362, 368, 620, 873
BfmI CTRYAG 1 cut(s) 513
BfuI GTATCC 3 cut(s) 228, 695, 1089
BisI GCNGC 3 cut(s) 651, 740, 747
BlsI GCNGC 3 cut(s) 652, 741, 748
Bme1390I CCNGG 1 cut(s) 828
BmgT120I GGNCC 2 cut(s) 314, 1109
BmiI GGNNCC 2 cut(s) 825, 1110
BmrFI CCNGG 1 cut(s) 828
BmsI GCATC 3 cut(s) 679, 849, 1093
BpiI GAAGAC 2 cut(s) 185, 1113
Bpu14I TTCGAA 1 cut(s) 632
BsaJI CCNNGG 3 cut(s) 128, 827, 1004
BsaWI WCCGGW 1 cut(s) 845
BsaXI ACNNNNNCTCC 2 cut(s) 985, 1015
Bse1I ACTGG 3 cut(s) 331, 619, 1121
Bse21I CCTNAGG 1 cut(s) 939
Bse3DI GCAATG 1 cut(s) 932
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 3 cut(s) 128, 827, 1004
BseMI GCAATG 1 cut(s) 932
BseMII CTCAG 4 cut(s) 443, 819, 850, 953
BseNI ACTGG 3 cut(s) 331, 619, 1121
BseSI GKGCMC 1 cut(s) 792
BseXI GCAGC 3 cut(s) 662, 751, 758
BshFI GGCC 2 cut(s) 316, 1111
BshNI GGYRCC 1 cut(s) 823
BsiSI CCGG 1 cut(s) 846
BslFI GGGAC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 2 cut(s) 316, 1111
Bsp119I TTCGAA 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 792
Bsp143I GATC 3 cut(s) 37, 887, 1046
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 2 cut(s) 385, 1082
BspANI GGCC 2 cut(s) 316, 1111
BspCNI CTCAG 4 cut(s) 442, 818, 849, 952
BspLI GGNNCC 2 cut(s) 825, 1110
BspPI GGATC 2 cut(s) 882, 1054
BspT104I TTCGAA 1 cut(s) 632
BspT107I GGYRCC 1 cut(s) 823
BsrDI GCAATG 1 cut(s) 932
BsrI ACTGG 3 cut(s) 331, 619, 1121
BssECI CCNNGG 3 cut(s) 128, 827, 1004
BssMI GATC 3 cut(s) 37, 887, 1046
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 2 cut(s) 290, 1238
BstAPI GCANNNNNTGC 2 cut(s) 656, 752
BstBI TTCGAA 1 cut(s) 632
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 4 cut(s) 429, 805, 836, 939
BstDSI CCRYGG 2 cut(s) 128, 1004
BstEII GGTNACC 1 cut(s) 380
BstKTI GATC 3 cut(s) 40, 890, 1049
BstMBI GATC 3 cut(s) 37, 887, 1046
BstMWI GCNNNNNNNGC 3 cut(s) 634, 656, 752
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 1 cut(s) 628
BstPI GGTNACC 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 826
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 1 cut(s) 792
BstV1I GCAGC 3 cut(s) 662, 751, 758
BstV2I GAAGAC 2 cut(s) 185, 1113
BstX2I RGATCY 1 cut(s) 1046
BstYI RGATCY 1 cut(s) 1046
Bsu36I CCTNAGG 1 cut(s) 939
BsuI GTATCC 3 cut(s) 228, 695, 1089
BsuRI GGCC 2 cut(s) 316, 1111
BtgI CCRYGG 2 cut(s) 128, 1004
Cac8I GCNNGC 1 cut(s) 744
Cfr13I GGNCC 2 cut(s) 314, 1109
Csp6I GTAC 2 cut(s) 603, 824
CviAII CATG 7 cut(s) 129, 248, 542, 625, 1031, 1073, 1218
CviQI GTAC 2 cut(s) 603, 824
DdeI CTNAG 4 cut(s) 429, 805, 836, 939
DpnI GATC 3 cut(s) 39, 889, 1048
DpnII GATC 3 cut(s) 37, 887, 1046
Eco130I CCWWGG 1 cut(s) 128
Eco57I CTGAAG 2 cut(s) 839, 957
Eco81I CCTNAGG 1 cut(s) 939
Eco91I GGTNACC 1 cut(s) 380
EcoO65I GGTNACC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 826
EcoT14I CCWWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 7 cut(s) 132, 251, 545, 628, 1034, 1076, 1221
FalI AAGNNNNNCTT 4 cut(s) 100, 132, 761, 793
FaqI GGGAC 1 cut(s) 523
FatI CATG 7 cut(s) 128, 247, 541, 624, 1030, 1072, 1217
FauNDI CATATG 1 cut(s) 1089
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 651, 740, 747
Fsp4HI GCNGC 3 cut(s) 651, 740, 747
FspBI CTAG 5 cut(s) 258, 362, 368, 620, 873
GluI GCNGC 3 cut(s) 651, 740, 747
HaeIII GGCC 2 cut(s) 316, 1111
HapII CCGG 1 cut(s) 846
Hin1II CATG 7 cut(s) 132, 251, 545, 628, 1034, 1076, 1221
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 8 cut(s) 185, 352, 395, 470, 868, 977, 1052, 1192
HpaII CCGG 1 cut(s) 846
HphI GGTGA 2 cut(s) 178, 392
Hpy166II GTNNAC 2 cut(s) 113, 462
Hpy188III TCNNGA 6 cut(s) 212, 467, 620, 899, 941, 1204
Hpy8I GTNNAC 2 cut(s) 113, 462
HpyAV CCTTC 5 cut(s) 450, 492, 500, 814, 981
HpyCH4III ACNGT 2 cut(s) 290, 1238
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 5 cut(s) 234, 608, 721, 1103, 1221
HpyF10VI GCNNNNNNNGC 3 cut(s) 634, 656, 752
HpyF3I CTNAG 4 cut(s) 429, 805, 836, 939
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 7 cut(s) 132, 251, 545, 628, 1034, 1076, 1221
KpnI GGTACC 1 cut(s) 827
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 3 cut(s) 37, 887, 1046
LmnI GCTCC 2 cut(s) 1006, 1206
Lsp1109I GCAGC 3 cut(s) 662, 751, 758
LweI GCATC 3 cut(s) 679, 849, 1093
MaeI CTAG 5 cut(s) 258, 362, 368, 620, 873
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 3 cut(s) 323, 333, 380
MalI GATC 3 cut(s) 39, 889, 1048
MboI GATC 3 cut(s) 37, 887, 1046
MboII GAAGA 6 cut(s) 38, 134, 155, 181, 190, 1113
MflI RGATCY 1 cut(s) 1046
MhlI GDGCHC 1 cut(s) 792
MluCI AATT 6 cut(s) 251, 590, 713, 880, 1143, 1197
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 1018
MnlI CCTC 8 cut(s) 301, 369, 406, 518, 690, 852, 903, 948
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 2 cut(s) 147, 981
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 1 cut(s) 846
MspR9I CCNGG 1 cut(s) 828
MvaI CCWGG 1 cut(s) 828
MwoI GCNNNNNNNGC 3 cut(s) 634, 656, 752
NcoI CCATGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 1089
NdeII GATC 3 cut(s) 37, 887, 1046
NlaIII CATG 7 cut(s) 132, 251, 545, 628, 1034, 1076, 1221
NlaIV GGNNCC 2 cut(s) 825, 1110
NmuCI GTSAC 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 723
NspI RCATGY 1 cut(s) 628
NspV TTCGAA 1 cut(s) 632
PdmI GAANNNNTTC 2 cut(s) 147, 981
PfeI GAWTC 7 cut(s) 352, 395, 470, 868, 977, 1052, 1192
PflFI GACNNNGTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 652, 741, 748
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 826
PspEI GGTNACC 1 cut(s) 380
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 2 cut(s) 825, 1110
PspPI GGNCC 2 cut(s) 314, 1109
PsuI RGATCY 1 cut(s) 1046
PsyI GACNNNGTC 1 cut(s) 184
RsaI GTAC 2 cut(s) 604, 825
RsaNI GTAC 2 cut(s) 603, 824
SatI GCNGC 3 cut(s) 651, 740, 747
Sau3AI GATC 3 cut(s) 37, 887, 1046
Sau96I GGNCC 2 cut(s) 314, 1109
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 1 cut(s) 792
SfaNI GCATC 3 cut(s) 679, 849, 1093
SfcI CTRYAG 1 cut(s) 513
SfuI TTCGAA 1 cut(s) 632
Sse9I AATT 6 cut(s) 251, 590, 713, 880, 1143, 1197
SsiI CCGC 2 cut(s) 385, 1082
SspMI CTAG 5 cut(s) 258, 362, 368, 620, 873
StyD4I CCNGG 1 cut(s) 826
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 2 cut(s) 290, 1238
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 632, 886
TasI AATT 6 cut(s) 251, 590, 713, 880, 1143, 1197
TatI WGTACW 1 cut(s) 602
TfiI GAWTC 7 cut(s) 352, 395, 470, 868, 977, 1052, 1192
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 3 cut(s) 650, 739, 746
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 8 cut(s) 135, 140, 191, 264, 365, 726, 974, 978
Tth111I GACNNNGTC 1 cut(s) 184
XapI RAATTY 3 cut(s) 251, 590, 713
XbaI TCTAGA 1 cut(s) 619
XceI RCATGY 1 cut(s) 628
XmnI GAANNNNTTC 2 cut(s) 147, 981
XspI CTAG 5 cut(s) 258, 362, 368, 620, 873
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.