pycom17g11560

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012526
Physical Location & Seq
Reverse (-)
9130952 .. 9134842
3891 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGGGGGTTAAACAAGCGTTAAAGAGCCTGGATGCGTTTCCTCGGGCGGAGGAGCACTTGCTGCAGAAAACACAATCGGGGGCACTCGTTTCTGTTGTTGGGCTGCTTATAATGGCGACATTGTTTGTGCACGAGCTTAGATATTATCTCACTACATATACCGTCCATCAGATGTCTGTAGACTTGAAGCGCGGAGAGACTCTTCCGATTCACATAAATATGACATTTCCAGCTTTACCTTGTGATGTCTTGAGTGTTGATGCAGTCGATATGTCAGGCAAGCATGAAGTAGATCTTGATACAAACATATGGAAACTTCGCCTGAACAGTCATGGACACATCATCGGCACTGAATATGTGTCTGACCTTGTTGAAAAGGAGCATTCTCAGAAGCACGATGACGGCAATCATCATGATGATAAGGACAAGGAAGTTTATCCACAAGGAGTTTTTGATCAAGCTGCAGAAGATCTTATCAAGAGGGTAAAGCATGCAATAGCAAATGGAGAAGGATGCCGGGTTTTTGGTGTTTTAGATGTCCAAAGGGTTGCTGGAAACTTTCATATATCAGTTCATGGGTTAAACATTTTTGCTGCGCAAATGATTTTTGAAGGATCTAGAAATGTAAATGTAAGCCACATCATACATGACTTGTCGTTTGGCCCAAAATATCCAGGAATTCACAACCCACTTGATGGGACAGACCGAATTTTGCATGACACAAGTGGCACATTCAAATATTATATAAAGATTGTTCCAACTGAATATAGGTATATCTCAAAAGAAGTTTTGCCAACCAACCAATTCTCTGTCACAGAATATTTCTCTCCTATGAAGCAGTTTGATAGGACATGGCCAGCTGTATACTTCCTGTATGATCTGTCACCAATTACTGTAACTATCAAAGAAGAACGCCGCAGTTTTCTCCATTTCATCACTCGGCTTTGTGCTGTATTGGGCGGTACCTTTGCTTTGACAGGACTGCTAGACAGATGGATGTACAGGTTTGTTGAAGCATTGACGGCCAAACCACATGCTAGAAGTGTACTGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

352

Amino Acids

39.91

Weight (kDa)

6.57

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 7 - 96 5.7e-29 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV PF07970 148 - 330 1.3e-45 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22290 AT3G22290
fragaria_vesca FvH4_6g40110 FvH4_6g40110 FvH4_6g40110 FvH4_6g40110
malus_domestica MD09G1135200.v1.1 MD17G1124200.v1.1
prunus_persica Prupe.3G191500_v2.0.a1
pyrus_communis pycom09g05630 pycom17g11560
rosa_chinensis RchiOBHm_Chr2g0154741
rosa_laevigata RLG00000020799
rosa_multiflora Rmu_sc0001027.1_g000004
rosa_roxburghii Rroxscaffold_2G00094140
rosa_rugosa Rorug02G0444800
rosa_samantha Rh2BG521200 Rh2CG495500
rosa_wichuraiana Rw2G041970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
Acc16I TGCGCA 1 cut(s) 597
Acc65I GGTACC 1 cut(s) 962
AccB1I GGYRCC 1 cut(s) 962
AccB7I CCANNNNNTGG 1 cut(s) 695
AccI GTMKAC 2 cut(s) 180, 864
AccII CGCG 1 cut(s) 192
AciI CCGC 4 cut(s) 47, 192, 916, 960
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 2 cut(s) 854, 1023
AcsI RAATTY 2 cut(s) 678, 708
AfaI GTAC 3 cut(s) 964, 1001, 1047
AfiI CCNNNNNNNGG 1 cut(s) 695
AgsI TTSAA 5 cut(s) 187, 374, 611, 736, 1013
AjnI CCWGG 2 cut(s) 27, 673
AluBI AGCT 4 cut(s) 136, 233, 461, 860
AluI AGCT 4 cut(s) 136, 233, 461, 860
Alw21I GWGCWC 2 cut(s) 57, 132
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 1 cut(s) 622
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 3 cut(s) 661, 854, 1023
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 4 cut(s) 61, 103, 461, 593
ApoI RAATTY 2 cut(s) 678, 708
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp718I GGTACC 1 cut(s) 962
AspLEI GCGC 2 cut(s) 192, 598
AspS9I GGNCC 1 cut(s) 662
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 876
AvaI CYCGRG 1 cut(s) 42
BaeGI GKGCMC 2 cut(s) 85, 132
BalI TGGCCA 1 cut(s) 856
BanI GGYRCC 1 cut(s) 962
BauI CACGAG 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 57, 132
BbvI GCAGC 4 cut(s) 48, 90, 448, 580
BccI CCATC 3 cut(s) 174, 689, 987
BceAI ACGGC 2 cut(s) 418, 1038
BciT130I CCWGG 2 cut(s) 29, 675
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 3 cut(s) 618, 986, 1038
BfmI CTRYAG 3 cut(s) 62, 177, 462
BglII AGATCT 2 cut(s) 292, 469
BisI GCNGC 5 cut(s) 62, 104, 462, 594, 916
BlsI GCNGC 5 cut(s) 63, 105, 463, 595, 917
Bme1390I CCNGG 3 cut(s) 29, 518, 675
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 662
BmiI GGNNCC 1 cut(s) 964
BmrFI CCNGG 3 cut(s) 29, 518, 675
BmsI GCATC 3 cut(s) 22, 250, 503
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 695
BseBI CCWGG 2 cut(s) 29, 675
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 3 cut(s) 37, 518, 1002
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 2 cut(s) 85, 132
BseXI GCAGC 4 cut(s) 48, 90, 448, 580
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 663, 856, 1025
BshNI GGYRCC 1 cut(s) 962
BsiHKAI GWGCWC 2 cut(s) 57, 132
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 517
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 712
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 3 cut(s) 663, 856, 1025
BsoBI CYCGRG 1 cut(s) 42
Bsp1286I GDGCHC 3 cut(s) 57, 85, 132
Bsp1407I TGTACA 1 cut(s) 999
Bsp143I GATC 5 cut(s) 292, 454, 469, 614, 877
BspACI CCGC 4 cut(s) 47, 192, 916, 960
BspANI GGCC 3 cut(s) 663, 856, 1025
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 964
BspMAI CTGCAG 2 cut(s) 66, 466
BspPI GGATC 1 cut(s) 622
BspT107I GGYRCC 1 cut(s) 962
BsrGI TGTACA 1 cut(s) 999
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 5 cut(s) 292, 454, 469, 614, 877
BssNAI GTATAC 1 cut(s) 865
BssSI CACGAG 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 865
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 29, 675
Bst4CI ACNGT 3 cut(s) 163, 329, 895
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 999
BstC8I GCNNGC 3 cut(s) 281, 492, 858
BstDEI CTNAG 2 cut(s) 137, 387
BstF5I GGATG 3 cut(s) 37, 518, 1002
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 2 cut(s) 192, 598
BstKTI GATC 5 cut(s) 295, 457, 472, 617, 880
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 5 cut(s) 292, 454, 469, 614, 877
BstMWI GCNNNNNNNGC 2 cut(s) 61, 1022
BstNI CCWGG 2 cut(s) 29, 675
BstNSI RCATGY 2 cut(s) 494, 1037
BstSCI CCNGG 3 cut(s) 27, 516, 673
BstSFI CTRYAG 3 cut(s) 62, 177, 462
BstSLI GKGCMC 2 cut(s) 85, 132
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 48, 90, 448, 580
BstX2I RGATCY 3 cut(s) 292, 469, 614
BstYI RGATCY 3 cut(s) 292, 469, 614
BstZ17I GTATAC 1 cut(s) 865
BsuRI GGCC 3 cut(s) 663, 856, 1025
BtsCI GGATG 3 cut(s) 37, 518, 1002
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 281, 492, 858
CciI TCATGA 1 cut(s) 412
CfoI GCGC 2 cut(s) 192, 598
Cfr13I GGNCC 1 cut(s) 662
Csp6I GTAC 3 cut(s) 963, 1000, 1046
CviAII CATG 9 cut(s) 284, 332, 413, 491, 575, 647, 716, 852, 1034
CviQI GTAC 3 cut(s) 963, 1000, 1046
DdeI CTNAG 2 cut(s) 137, 387
DpnI GATC 5 cut(s) 294, 456, 471, 616, 879
DpnII GATC 5 cut(s) 292, 454, 469, 614, 877
EaeI YGGCCR 2 cut(s) 854, 1023
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
EciI GGCGGA 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 27, 673
FaeI CATG 9 cut(s) 287, 335, 416, 494, 578, 650, 719, 855, 1037
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 1 cut(s) 712
FatI CATG 9 cut(s) 283, 331, 412, 490, 574, 646, 715, 851, 1033
FauNDI CATATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 2 cut(s) 180, 864
Fnu4HI GCNGC 5 cut(s) 62, 104, 462, 594, 916
FokI GGATG 3 cut(s) 44, 525, 1009
Fsp4HI GCNGC 5 cut(s) 62, 104, 462, 594, 916
FspBI CTAG 3 cut(s) 618, 986, 1038
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 2 cut(s) 191, 597
GluI GCNGC 5 cut(s) 62, 104, 462, 594, 916
HaeIII GGCC 3 cut(s) 663, 856, 1025
HapII CCGG 1 cut(s) 517
HhaI GCGC 2 cut(s) 192, 598
Hin1II CATG 9 cut(s) 287, 335, 416, 494, 578, 650, 719, 855, 1037
Hin6I GCGC 2 cut(s) 190, 596
HinP1I GCGC 2 cut(s) 190, 596
HinfI GANTC 2 cut(s) 199, 208
HpaII CCGG 1 cut(s) 517
HphI GGTGA 1 cut(s) 876
Hpy166II GTNNAC 4 cut(s) 130, 181, 865, 1046
Hpy188I TCNGA 4 cut(s) 171, 207, 364, 390
Hpy188III TCNNGA 5 cut(s) 250, 296, 413, 478, 618
Hpy8I GTNNAC 4 cut(s) 130, 181, 865, 1046
HpyAV CCTTC 2 cut(s) 503, 605
HpyCH4III ACNGT 3 cut(s) 163, 329, 895
HpyCH4V TGCA 6 cut(s) 64, 130, 263, 464, 494, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 1022
HpyF3I CTNAG 2 cut(s) 137, 387
Hsp92II CATG 9 cut(s) 287, 335, 416, 494, 578, 650, 719, 855, 1037
HspAI GCGC 2 cut(s) 190, 596
KpnI GGTACC 1 cut(s) 966
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 5 cut(s) 292, 454, 469, 614, 877
LmnI GCTCC 2 cut(s) 52, 379
Lsp1109I GCAGC 4 cut(s) 48, 90, 448, 580
LweI GCATC 3 cut(s) 22, 250, 503
MaeI CTAG 3 cut(s) 618, 986, 1038
MaeIII GTNAC 3 cut(s) 811, 882, 895
MalI GATC 5 cut(s) 294, 456, 471, 616, 879
MboI GATC 5 cut(s) 292, 454, 469, 614, 877
MboII GAAGA 3 cut(s) 194, 479, 920
MflI RGATCY 3 cut(s) 292, 469, 614
MhlI GDGCHC 3 cut(s) 57, 85, 132
MlsI TGGCCA 1 cut(s) 856
MluCI AATT 4 cut(s) 678, 708, 803, 888
MluNI TGGCCA 1 cut(s) 856
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 3 cut(s) 43, 51, 474
Mox20I TGGCCA 1 cut(s) 856
MscI TGGCCA 1 cut(s) 856
MseI TTAA 3 cut(s) 9, 20, 581
MslI CAYNNNNRTG 2 cut(s) 218, 414
Msp20I TGGCCA 1 cut(s) 856
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 1 cut(s) 517
MspR9I CCNGG 3 cut(s) 29, 518, 675
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 2 cut(s) 29, 675
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 61, 1022
NciI CCSGG 1 cut(s) 518
NdeI CATATG 1 cut(s) 308
NdeII GATC 5 cut(s) 292, 454, 469, 614, 877
NlaIII CATG 9 cut(s) 287, 335, 416, 494, 578, 650, 719, 855, 1037
NlaIV GGNNCC 1 cut(s) 964
NmeAIII GCCGAG 1 cut(s) 919
NmuCI GTSAC 2 cut(s) 811, 882
NsbI TGCGCA 1 cut(s) 597
NspI RCATGY 2 cut(s) 494, 1037
PaeI GCATGC 1 cut(s) 494
PagI TCATGA 1 cut(s) 412
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 695
PfoI TCCNGGA 1 cut(s) 673
PkrI GCNGC 5 cut(s) 63, 105, 463, 595, 917
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PsiI TTATAA 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 27, 673
PspGI CCWGG 2 cut(s) 27, 673
PspN4I GGNNCC 1 cut(s) 964
PspPI GGNCC 1 cut(s) 662
PstI CTGCAG 2 cut(s) 66, 466
PsuI RGATCY 3 cut(s) 292, 469, 614
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 3 cut(s) 964, 1001, 1047
RsaNI GTAC 3 cut(s) 963, 1000, 1046
RseI CAYNNNNRTG 2 cut(s) 218, 414
SaqAI TTAA 3 cut(s) 9, 20, 581
SatI GCNGC 5 cut(s) 62, 104, 462, 594, 916
Sau3AI GATC 5 cut(s) 292, 454, 469, 614, 877
Sau96I GGNCC 1 cut(s) 662
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 3 cut(s) 29, 518, 675
SduI GDGCHC 3 cut(s) 57, 85, 132
SetI ASST 9 cut(s) 138, 235, 241, 369, 463, 773, 862, 968, 1007
SfaNI GCATC 3 cut(s) 22, 250, 503
SfcI CTRYAG 3 cut(s) 62, 177, 462
SmiMI CAYNNNNRTG 2 cut(s) 218, 414
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SphI GCATGC 1 cut(s) 494
Sse9I AATT 4 cut(s) 678, 708, 803, 888
SsiI CCGC 4 cut(s) 47, 192, 916, 960
SspI AATATT 2 cut(s) 740, 821
SspMI CTAG 3 cut(s) 618, 986, 1038
StyD4I CCNGG 3 cut(s) 27, 516, 673
TaaI ACNGT 3 cut(s) 163, 329, 895
TaqI TCGA 1 cut(s) 267
TaqII GACCGA 1 cut(s) 720
TasI AATT 4 cut(s) 678, 708, 803, 888
TatI WGTACW 2 cut(s) 999, 1045
TauI GCSGC 1 cut(s) 918
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 3 cut(s) 9, 20, 581
Tru9I TTAA 3 cut(s) 9, 20, 581
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 2 cut(s) 811, 882
TseI GCWGC 4 cut(s) 61, 103, 461, 593
Tsp45I GTSAC 2 cut(s) 811, 882
TspDTI ATGAA 5 cut(s) 300, 551, 563, 848, 922
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 695
VneI GTGCAC 1 cut(s) 128
XapI RAATTY 2 cut(s) 678, 708
XbaI TCTAGA 1 cut(s) 617
XceI RCATGY 2 cut(s) 494, 1037
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmiI GTMKAC 2 cut(s) 180, 864
XspI CTAG 3 cut(s) 618, 986, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.