Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008453

Physical Location & Seq

Genomic Coordinates Reverse (-)

13599629 .. 13602855

Gene Structure 3227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCCGATGATCTGCTCCACCGTTCCTGCTGCTGCTGGGTACTTGATAGCAGAGAAGAGCCCGAGAAAAACAGTCACAGACGAAGAAATCTTACCAGGTGTAATTCGTGAACTAAATTTGCATCAATCTCTTATGGAACTAGCACTATCTTCTCCATTGTTCCCTTCAAATGCAACAAGGGGTGTCAATAAGATTAAGCCTTATAGCTCCATGCTCATTGCCTCACAAAAGTTGTCCGCCCAGAAATCGTTTCCATGTGTCGCAGCTGTTGCTACCCAAGCAGCCCAGACGGTGGAGCTTGAGGTAGAGAGCAAGAAACATGAGCTGTTGAGAGCTATACAAGACACCGGAAGGGGCCTTGTTACAACCGATGATCAACGCTCGTTTATAGAGGAGGCTCTGGTGAGTGTGGAGGGCTATAACATGGGTGCACCAATAGACTTGGTGAAATTGGATGGGACGTGGCGTTTGCAATATACTTCCGCTTCTGACGTTCTCATTCTTCTGGAAGCGGCTGAAAGGCTACCATTTTTTCAGGTTGGGCAAATTTTTCAGAAATTTGAATGCAAAGACCAGACCAACGGGGGAGTGATCCGTAATGTTGTTAGATGGAGCATTCCACCTTTGTTAGAGGAACAAGAAGGTGCAACTCTGCTAGTTTCTGCAAAATTTTCGGTTGTTTCTGTGCGTAACATCTACCTTCAGTTCGAAGAGATTAATGTTCAAGATATTAAAATCAGTGAAGAGCTGCAGGCTCTAATAGCTCCAGCAATATTGCCACGATCGTTTTTAAGTTTACAGATCTTGCAGTACCTCCGGACTTTCAAAGCGCAAATTCCCGTTAGAGATCCAGGAAGTAGGCAATCAGTCGGAGGACTATATTACCTTTCTTACTTGGATGCTAATATGCTTTTGGGGCGCGCGGTTGGTGGTGGAGGAGTTTTTGTTTTCACCAAAGCTCAACCTCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

325

Amino Acids

35.66

Weight (kDa)

6.23

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	105 - 317	3.1e-23	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46910
fragaria_vesca	FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990 FvH4_6g36990
malus_domestica	MD17G1162500.v1.1
prunus_persica	Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1 Prupe.3G022800_v2.0.a1
pyrus_communis	pycom17g15560
rosa_chinensis	RchiOBHm_Chr2g0149531
rosa_laevigata	RLG00000020417
rosa_multiflora	Rmu_sc0006867.1_g000012 Rmu_sc0008619.1_g000008
rosa_roxburghii	Rroxscaffold_2G00098040
rosa_rugosa	Rorug02G0412100
rosa_samantha	Rh2AG472500 Rh2BG484500 Rh2CG458400 Rh2DG493700
rosa_wichuraiana	Rw2G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccII	CGCG	2 cut(s)	921, 923
AccIII	TCCGGA	1 cut(s)	816
AciI	CCGC	4 cut(s)	237, 483, 512, 923
AclWI	GGATC	2 cut(s)	586, 842
AcsI	RAATTY	5 cut(s)	115, 546, 557, 668, 834
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	41, 812
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	168, 563, 725, 826
AjiI	CACGTC	1 cut(s)	462
AjnI	CCWGG	2 cut(s)	94, 850
AluBI	AGCT	8 cut(s)	207, 266, 298, 325, 335, 748, 764, 959
AluI	AGCT	8 cut(s)	207, 266, 298, 325, 335, 748, 764, 959
Alw21I	GWGCWC	1 cut(s)	433
Alw44I	GTGCAC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	586, 842
Ama87I	CYCGRG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	816
AoxI	GGCC	1 cut(s)	355
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	5 cut(s)	29, 32, 263, 281, 748
ApoI	RAATTY	5 cut(s)	115, 546, 557, 668, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AseI	ATTAAT	1 cut(s)	717
AspLEI	GCGC	3 cut(s)	832, 921, 923
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	3 cut(s)	415, 457, 943
AsuII	TTCGAA	1 cut(s)	708
AvaI	CYCGRG	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	62
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	5 cut(s)	16, 19, 275, 293, 735
BccI	CCATC	2 cut(s)	449, 603
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	2 cut(s)	96, 852
BclI	TGATCA	1 cut(s)	373
BfaI	CTAG	2 cut(s)	140, 656
BfmI	CTRYAG	1 cut(s)	749
BglII	AGATCT	1 cut(s)	801
BisI	GCNGC	6 cut(s)	30, 33, 264, 282, 513, 749
BlsI	GCNGC	6 cut(s)	31, 34, 265, 283, 514, 750
Bme1390I	CCNGG	2 cut(s)	96, 852
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	2 cut(s)	96, 852
BmsI	GCATC	2 cut(s)	130, 889
BpmI	CTGGAG	1 cut(s)	750
Bpu14I	TTCGAA	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	320
BsaWI	WCCGGW	2 cut(s)	347, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	96, 852
BseGI	GGATG	2 cut(s)	460, 904
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	216
BsePI	GCGCGC	1 cut(s)	919
BseRI	GAGGAG	2 cut(s)	407, 951
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	5 cut(s)	16, 19, 275, 293, 735
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	2 cut(s)	921, 923
Bsh1285I	CGRYCG	1 cut(s)	785
BshFI	GGCC	1 cut(s)	357
BsiEI	CGRYCG	1 cut(s)	785
BsiHKAI	GWGCWC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	348, 817
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	2 cut(s)	569, 615
BsnI	GGCC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	708
Bsp1286I	GDGCHC	2 cut(s)	62, 433
Bsp13I	TCCGGA	1 cut(s)	816
Bsp143I	GATC	6 cut(s)	9, 373, 591, 782, 801, 847
BspACI	CCGC	4 cut(s)	237, 483, 512, 923
BspANI	GGCC	1 cut(s)	357
BspEI	TCCGGA	1 cut(s)	816
BspFNI	CGCG	2 cut(s)	921, 923
BspLI	GGNNCC	1 cut(s)	356
BspMAI	CTGCAG	1 cut(s)	753
BspPI	GGATC	2 cut(s)	586, 842
BspQI	GCTCTTC	2 cut(s)	50, 738
BspT104I	TTCGAA	1 cut(s)	708
BsrDI	GCAATG	1 cut(s)	216
BssHII	GCGCGC	1 cut(s)	919
BssMI	GATC	6 cut(s)	9, 373, 591, 782, 801, 847
Bst2UI	CCWGG	2 cut(s)	96, 852
Bst4CI	ACNGT	3 cut(s)	22, 73, 292
Bst6I	CTCTTC	3 cut(s)	50, 705, 738
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	708
BstC8I	GCNNGC	2 cut(s)	753, 921
BstF5I	GGATG	2 cut(s)	460, 904
BstFNI	CGCG	2 cut(s)	921, 923
BstHHI	GCGC	3 cut(s)	832, 921, 923
BstKTI	GATC	6 cut(s)	12, 376, 594, 785, 804, 850
BstMBI	GATC	6 cut(s)	9, 373, 591, 782, 801, 847
BstMCI	CGRYCG	1 cut(s)	785
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 278, 761, 916
BstNI	CCWGG	2 cut(s)	96, 852
BstSCI	CCNGG	2 cut(s)	94, 850
BstSFI	CTRYAG	1 cut(s)	749
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	2 cut(s)	921, 923
BstV1I	GCAGC	5 cut(s)	16, 19, 275, 293, 735
BstX2I	RGATCY	2 cut(s)	801, 847
BstYI	RGATCY	2 cut(s)	801, 847
BsuRI	GGCC	1 cut(s)	357
BtrI	CACGTC	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	460, 904
BtsIMutI	CAGTG	1 cut(s)	745
Cac8I	GCNNGC	2 cut(s)	753, 921
CfoI	GCGC	3 cut(s)	832, 921, 923
Cfr13I	GGNCC	1 cut(s)	355
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	40, 811
CviAII	CATG	4 cut(s)	211, 255, 320, 424
CviQI	GTAC	2 cut(s)	40, 811
DpnI	GATC	6 cut(s)	11, 375, 593, 784, 803, 849
DpnII	GATC	6 cut(s)	9, 373, 591, 782, 801, 847
Eam1104I	CTCTTC	3 cut(s)	50, 705, 738
EarI	CTCTTC	3 cut(s)	50, 705, 738
EciI	GGCGGA	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	94, 850
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	4 cut(s)	214, 258, 323, 427
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	210, 254, 319, 423
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	6 cut(s)	30, 33, 264, 282, 513, 749
FokI	GGATG	2 cut(s)	467, 911
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	6 cut(s)	30, 33, 264, 282, 513, 749
FspBI	CTAG	2 cut(s)	140, 656
GlaI	GCGC	3 cut(s)	831, 920, 922
GluI	GCNGC	6 cut(s)	30, 33, 264, 282, 513, 749
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	2 cut(s)	348, 817
HhaI	GCGC	3 cut(s)	832, 921, 923
Hin1II	CATG	4 cut(s)	214, 258, 323, 427
Hin6I	GCGC	3 cut(s)	830, 919, 921
HinP1I	GCGC	3 cut(s)	830, 919, 921
HpaII	CCGG	2 cut(s)	348, 817
HphI	GGTGA	3 cut(s)	415, 457, 943
Hpy166II	GTNNAC	3 cut(s)	110, 431, 797
Hpy188I	TCNGA	4 cut(s)	490, 555, 872, 969
Hpy188III	TCNNGA	4 cut(s)	107, 506, 725, 817
Hpy8I	GTNNAC	3 cut(s)	110, 431, 797
HpyAV	CCTTC	4 cut(s)	174, 345, 635, 710
HpyCH4III	ACNGT	3 cut(s)	22, 73, 292
HpyCH4IV	ACGT	2 cut(s)	461, 492
HpyCH4V	TGCA	9 cut(s)	121, 173, 431, 472, 567, 647, 665, 751, 808
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 278, 761, 916
HpySE526I	ACGT	2 cut(s)	461, 492
Hsp92II	CATG	4 cut(s)	214, 258, 323, 427
HspAI	GCGC	3 cut(s)	830, 919, 921
Kpn2I	TCCGGA	1 cut(s)	816
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	9, 373, 591, 782, 801, 847
LguI	GCTCTTC	2 cut(s)	50, 738
LmnI	GCTCC	5 cut(s)	20, 212, 295, 612, 769
Lsp1109I	GCAGC	5 cut(s)	16, 19, 275, 293, 735
LweI	GCATC	2 cut(s)	130, 889
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	2 cut(s)	140, 656
MaeII	ACGT	2 cut(s)	461, 492
MaeIII	GTNAC	3 cut(s)	73, 361, 689
MalI	GATC	6 cut(s)	11, 375, 593, 784, 803, 849
MboI	GATC	6 cut(s)	9, 373, 591, 782, 801, 847
MboII	GAAGA	6 cut(s)	67, 95, 141, 494, 722, 755
MflI	RGATCY	2 cut(s)	801, 847
MhlI	GDGCHC	2 cut(s)	62, 433
MluCI	AATT	7 cut(s)	102, 115, 449, 546, 557, 668, 834
MmeI	TCCRAC	1 cut(s)	850
MroI	TCCGGA	1 cut(s)	816
MseI	TTAA	4 cut(s)	195, 717, 732, 791
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	348, 817
MspR9I	CCNGG	2 cut(s)	96, 852
Mva1269I	GAATGC	2 cut(s)	569, 615
MvaI	CCWGG	2 cut(s)	96, 852
MvnI	CGCG	2 cut(s)	921, 923
MwoI	GCNNNNNNNGC	4 cut(s)	269, 278, 761, 916
NdeII	GATC	6 cut(s)	9, 373, 591, 782, 801, 847
NlaIII	CATG	4 cut(s)	214, 258, 323, 427
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	708
PauI	GCGCGC	1 cut(s)	919
PciSI	GCTCTTC	2 cut(s)	50, 738
PctI	GAATGC	2 cut(s)	569, 615
PflMI	CCANNNNNTGG	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	850
PkrI	GCNGC	6 cut(s)	31, 34, 265, 283, 514, 750
Ple19I	CGATCG	1 cut(s)	785
PshBI	ATTAAT	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	94, 850
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	2 cut(s)	94, 850
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	753
PsuI	RGATCY	2 cut(s)	801, 847
PteI	GCGCGC	1 cut(s)	919
PvuI	CGATCG	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	41, 812
RsaNI	GTAC	2 cut(s)	40, 811
SapI	GCTCTTC	2 cut(s)	50, 738
SaqAI	TTAA	4 cut(s)	195, 717, 732, 791
SatI	GCNGC	6 cut(s)	30, 33, 264, 282, 513, 749
Sau3AI	GATC	6 cut(s)	9, 373, 591, 782, 801, 847
Sau96I	GGNCC	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	96, 852
SduI	GDGCHC	2 cut(s)	62, 433
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	2 cut(s)	130, 889
SfcI	CTRYAG	1 cut(s)	749
SfuI	TTCGAA	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	7 cut(s)	102, 115, 449, 546, 557, 668, 834
SsiI	CCGC	4 cut(s)	237, 483, 512, 923
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	2 cut(s)	140, 656
StyD4I	CCNGG	2 cut(s)	94, 850
TaaI	ACNGT	3 cut(s)	22, 73, 292
TaiI	ACGT	2 cut(s)	464, 495
TaqI	TCGA	1 cut(s)	708
TasI	AATT	7 cut(s)	102, 115, 449, 546, 557, 668, 834
TauI	GCSGC	1 cut(s)	515
Tru1I	TTAA	4 cut(s)	195, 717, 732, 791
Tru9I	TTAA	4 cut(s)	195, 717, 732, 791
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	5 cut(s)	29, 32, 263, 281, 748
Tsp45I	GTSAC	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	745
Van91I	CCANNNNNTGG	1 cut(s)	292
VneI	GTGCAC	1 cut(s)	429
VspI	ATTAAT	1 cut(s)	717
XapI	RAATTY	5 cut(s)	115, 546, 557, 668, 834
XspI	CTAG	2 cut(s)	140, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.