Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004111

Physical Location & Seq

Genomic Coordinates Reverse (-)

13957274 .. 13960367

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g15810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTTCTACTTCTATCTGATGCCAGGGAATACCCAGATTAGAAGGGTTTTTAAAAGGCAAGTTATATTCATTGTTGATATGAGTGGAAGCATGCTGGGAGACCCTCTTGAAAATGCAAAGAATGCACTGTTGGCATCACTTTCTAATCTCAACCGAGAAGATACTTTCAACATAATAGCTTTCAATGGAGGGGTTCACTTATTCTCATCATCAATGGAGTTGGCAACAAATGAGGCAATGCTAAAAGCTAAGAACTGGGTTGACGCCAATCTTATTGCGAATGGTGGTACAAATATCTTGCTTCCCTTCAGAGAGGCTATGATATTGTTGGCCAAGACGGTTGATTCACTTCCCTTCATATTTCTCATAACTGACGGCGCAGTTGAAAATGAGAGGGAGATTTGCACTTTTATGGAAGGTTATGCAAGTGCAGGTTCAGTTTGTCCTCGCATATCTACTCTTGGCATAGGTTTATATTGTAACCATTACTTCCTGCAAATGCTAGCCCAAATTGGGAAGGGCTACTATGATGCTGCTTATGATTCAGAGTCAATTGACTATAAAATGCAAAGGTTATTCACAAGTGCATCGTCAGTGATTCTTGCCAATATAACCGTGGATGCTTTAGACTCTCTTGATTCACTTGAGCGGTATCCATCTCATATCCCAGACCTTTCATCTGGAAGTCCATTGATCATGTCAGGCAGATACGAGGGAAGCTTTCCCGATTCCATTAAAGTTCATGGTACCTTGGCTGATATGAGCAATTTTGTTATAGACTTGAAAGTGCAAAGATCTAAGGATATTCCACTTGATCAGGTGCTTGCAAGAAGGCACATTGACATGCTTACAGCTCATGCATGGTTATTGGGAAGTAAAGAGCTTGAAGAGAAGGTTTCTAAATTGAGCAAACAAACCGGGGTTCCATCTGAGTACACTTGCATGATACTATTGCTGACTAATGAGGGGAAGAAAGCACCGGAATCAGTTATGATCCAAGAGGTCTACAACAAAATTACTCAGTGGAAGAAGCCAGAGTCGAATAGCCAGAAGGTGATAATCCTCGGAAACCTGGGTTTTGGCTTTGGTAACTTGACTGCAACGGTCCAGAACAAAGCACCGGGAAGTGAAGAAGAAAAGCCGGCTGATGCCACAGAAATGTTGGTGAACGCGGCTTCCAACTGCTGCAGCCGAGTACTTGACCGCGTCTGTTGCATGTGTTTCATTAGGACTTGTTCGCACATGAACAACCAGTGCGCAATTGTTCTCACACAAGTCTGCACTGCCCTTGCCTGCTTTGAGTGCCTGAATTGTTGCTATGAACTATTCGCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA_3

Protein Analysis

446

Amino Acids

49.18

Weight (kDa)

5.4

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72500 AT1G72500 AT1G72500
fragaria_vesca	FvH4_6g35050 FvH4_6g35050 FvH4_6g35050 FvH4_6g35050 FvH4_6g35050 FvH4_6g35050 FvH4_6g35050
malus_domestica	MD09G1179800.v1.1 MD17G1165400.v1.1
prunus_persica	Prupe.3G038500_v2.0.a1 Prupe.3G038500_v2.0.a1 Prupe.3G038500_v2.0.a1
pyrus_communis	pycom09g09750 pycom17g15810
rosa_chinensis	RchiOBHm_Chr2g0146211
rosa_laevigata	RLG00000020186
rosa_multiflora	Rmu_ssc0000305.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434910 Rroxscaffold_1G00024240 Rroxscaffold_1G00059690 Rroxscaffold_2G00100240 Rroxscaffold_2G00150940 Rroxscaffold_5G00356980 Rroxscaffold_7G00181760
rosa_rugosa	Rorug02G0393800
rosa_samantha	Rh2AG449800 Rh2BG462000 Rh2CG436700 Rh2DG471300
rosa_wichuraiana	Rw2G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1258
Acc36I	ACCTGC	1 cut(s)	422
Acc65I	GGTACC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	746
AccBSI	CCGCTC	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	1005
AccII	CGCG	2 cut(s)	1172, 1206
AciI	CCGC	3 cut(s)	649, 1172, 1204
AclWI	GGATC	1 cut(s)	988
AcoI	YGGCCR	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	4 cut(s)	289, 748, 935, 1197
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	110, 169, 184, 386, 784, 887
AjnI	CCWGG	2 cut(s)	22, 1071
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AloI	GAACNNNNNNTCC	2 cut(s)	1160, 1192
AluBI	AGCT	5 cut(s)	179, 248, 720, 854, 883
AluI	AGCT	5 cut(s)	179, 248, 720, 854, 883
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	988
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	533, 1185, 1188
Asp718I	GGTACC	1 cut(s)	746
AspLEI	GCGC	2 cut(s)	380, 1259
AspS9I	GGNCC	1 cut(s)	1105
AsuC2I	CCSGG	2 cut(s)	919, 1122
AsuHPI	GGTGA	2 cut(s)	1066, 1177
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	1105
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	746
BbvI	GCAGC	3 cut(s)	520, 1172, 1200
BccI	CCATC	2 cut(s)	664, 934
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	24, 1073
BciVI	GTATCC	1 cut(s)	663
BclI	TGATCA	2 cut(s)	693, 814
BcnI	CCSGG	2 cut(s)	919, 1122
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	1186
BfuAI	ACCTGC	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	663
BglII	AGATCT	1 cut(s)	794
BisI	GCNGC	4 cut(s)	534, 1173, 1186, 1189
BlsI	GCNGC	4 cut(s)	535, 1174, 1187, 1190
BmcAI	AGTACT	1 cut(s)	1197
Bme1390I	CCNGG	4 cut(s)	24, 919, 1073, 1122
Bme18I	GGWCC	1 cut(s)	1105
BmgT120I	GGNCC	1 cut(s)	1105
BmiI	GGNNCC	2 cut(s)	748, 924
BmrFI	CCNGG	4 cut(s)	24, 919, 1073, 1122
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	6 cut(s)	9, 143, 520, 596, 610, 1138
BmtI	GCTAGC	1 cut(s)	506
BmuI	ACTGGG	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	919, 1122
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	6 cut(s)	23, 615, 750, 918, 1063, 1072
BsaWI	WCCGGW	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse118I	RCCGGY	1 cut(s)	1141
Bse1I	ACTGG	2 cut(s)	260, 1252
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	24, 1073
BseDI	CCNNGG	6 cut(s)	23, 615, 750, 918, 1063, 1072
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	921, 1034
BseNI	ACTGG	2 cut(s)	260, 1252
BseXI	GCAGC	3 cut(s)	520, 1172, 1200
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	2 cut(s)	450, 1264
Bsh1236I	CGCG	2 cut(s)	1172, 1206
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	746
BsiSI	CCGG	4 cut(s)	918, 980, 1121, 1142
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	693, 794, 814, 993
BspACI	CCGC	3 cut(s)	649, 1172, 1204
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	922, 1033
BspFNI	CGCG	2 cut(s)	1172, 1206
BspLI	GGNNCC	2 cut(s)	748, 924
BspMAI	CTGCAG	1 cut(s)	1190
BspMI	ACCTGC	1 cut(s)	422
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	988
BspT107I	GGYRCC	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	1141
BsrI	ACTGG	2 cut(s)	260, 1252
BssAI	RCCGGY	1 cut(s)	1141
BssECI	CCNNGG	6 cut(s)	23, 615, 750, 918, 1063, 1072
BssMI	GATC	4 cut(s)	693, 794, 814, 993
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	24, 1073
Bst4CI	ACNGT	4 cut(s)	129, 340, 616, 1105
Bst6I	CTCTTC	1 cut(s)	882
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	5 cut(s)	92, 504, 825, 1143, 1294
BstDEI	CTNAG	4 cut(s)	249, 798, 930, 1020
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	1172, 1206
BstHHI	GCGC	2 cut(s)	380, 1259
BstKTI	GATC	4 cut(s)	696, 797, 817, 996
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	4 cut(s)	693, 794, 814, 993
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 131, 1212, 1302
BstNI	CCWGG	2 cut(s)	24, 1073
BstNSI	RCATGY	3 cut(s)	94, 847, 1219
BstSCI	CCNGG	4 cut(s)	22, 917, 1071, 1120
BstSFI	CTRYAG	1 cut(s)	1186
BstUI	CGCG	2 cut(s)	1172, 1206
BstV1I	GCAGC	3 cut(s)	520, 1172, 1200
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	1281
BtsIMutI	CAGTG	5 cut(s)	125, 600, 1028, 1259, 1281
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	5 cut(s)	92, 504, 825, 1143, 1294
CfoI	GCGC	2 cut(s)	380, 1259
Cfr10I	RCCGGY	1 cut(s)	1141
Cfr13I	GGNCC	1 cut(s)	1105
CseI	GACGC	2 cut(s)	272, 1195
Csp6I	GTAC	4 cut(s)	288, 747, 934, 1196
CviAII	CATG	9 cut(s)	91, 697, 743, 844, 857, 861, 943, 1216, 1243
CviQI	GTAC	4 cut(s)	288, 747, 934, 1196
DdeI	CTNAG	4 cut(s)	249, 798, 930, 1020
DpnI	GATC	4 cut(s)	695, 796, 816, 995
DpnII	GATC	4 cut(s)	693, 794, 814, 993
DraI	TTTAAA	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
Eco130I	CCWWGG	1 cut(s)	750
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	1105
Eco57I	CTGAAG	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	22, 1071
EcoT14I	CCWWGG	1 cut(s)	750
EcoT22I	ATGCAT	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	9 cut(s)	94, 700, 746, 847, 860, 864, 946, 1219, 1246
FatI	CATG	9 cut(s)	90, 696, 742, 843, 856, 860, 942, 1215, 1242
FbaI	TGATCA	2 cut(s)	693, 814
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	4 cut(s)	534, 1173, 1186, 1189
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	4 cut(s)	534, 1173, 1186, 1189
FspBI	CTAG	1 cut(s)	503
FspI	TGCGCA	1 cut(s)	1258
GlaI	GCGC	2 cut(s)	379, 1258
GluI	GCNGC	4 cut(s)	534, 1173, 1186, 1189
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	4 cut(s)	918, 980, 1121, 1142
HgaI	GACGC	2 cut(s)	272, 1195
HhaI	GCGC	2 cut(s)	380, 1259
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	9 cut(s)	94, 700, 746, 847, 860, 864, 946, 1219, 1246
Hin6I	GCGC	2 cut(s)	378, 1257
HinP1I	GCGC	2 cut(s)	378, 1257
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	718
HinfI	GANTC	9 cut(s)	344, 542, 548, 598, 629, 638, 728, 983, 1037
HpaII	CCGG	4 cut(s)	918, 980, 1121, 1142
HphI	GGTGA	2 cut(s)	1066, 1177
Hpy166II	GTNNAC	5 cut(s)	196, 262, 936, 1006, 1168
Hpy188I	TCNGA	5 cut(s)	18, 311, 547, 931, 1067
Hpy188III	TCNNGA	5 cut(s)	107, 635, 681, 725, 1108
Hpy8I	GTNNAC	5 cut(s)	196, 262, 936, 1006, 1168
HpyAV	CCTTC	8 cut(s)	36, 316, 364, 410, 511, 825, 886, 1045
HpyCH4III	ACNGT	4 cut(s)	129, 340, 616, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 131, 1212, 1302
HpyF3I	CTNAG	4 cut(s)	249, 798, 930, 1020
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	9 cut(s)	94, 700, 746, 847, 860, 864, 946, 1219, 1246
HspAI	GCGC	2 cut(s)	378, 1257
KpnI	GGTACC	1 cut(s)	750
KroI	GCCGGC	1 cut(s)	1141
KroNI	GCCGGC	1 cut(s)	1143
Ksp22I	TGATCA	2 cut(s)	693, 814
Kzo9I	GATC	4 cut(s)	693, 794, 814, 993
Lsp1109I	GCAGC	3 cut(s)	520, 1172, 1200
LweI	GCATC	6 cut(s)	9, 143, 520, 596, 610, 1138
MaeI	CTAG	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	479, 1088
MalI	GATC	4 cut(s)	695, 796, 816, 995
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	4 cut(s)	693, 794, 814, 993
MboII	GAAGA	6 cut(s)	170, 899, 982, 1039, 1142, 1145
MfeI	CAATTG	2 cut(s)	552, 1260
MflI	RGATCY	1 cut(s)	794
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	7 cut(s)	510, 552, 766, 902, 1014, 1260, 1309
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	3 cut(s)	557, 623, 1046
MmeI	TCCRAC	1 cut(s)	1203
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	1 cut(s)	862
MroNI	GCCGGC	1 cut(s)	1141
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	2 cut(s)	51, 735
MslI	CAYNNNNRTG	4 cut(s)	410, 842, 941, 1157
Msp20I	TGGCCA	1 cut(s)	332
MspI	CCGG	4 cut(s)	918, 980, 1121, 1142
MspR9I	CCNGG	4 cut(s)	24, 919, 1073, 1122
MunI	CAATTG	2 cut(s)	552, 1260
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	24, 1073
MvnI	CGCG	2 cut(s)	1172, 1206
MwoI	GCNNNNNNNGC	4 cut(s)	122, 131, 1212, 1302
NaeI	GCCGGC	1 cut(s)	1143
NciI	CCSGG	2 cut(s)	919, 1122
NdeII	GATC	4 cut(s)	693, 794, 814, 993
NgoMIV	GCCGGC	1 cut(s)	1141
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	9 cut(s)	94, 700, 746, 847, 860, 864, 946, 1219, 1246
NlaIV	GGNNCC	2 cut(s)	748, 924
NmeAIII	GCCGAG	1 cut(s)	1217
NsbI	TGCGCA	1 cut(s)	1258
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	3 cut(s)	94, 847, 1219
PaeI	GCATGC	1 cut(s)	94
PctI	GAATGC	1 cut(s)	127
PdiI	GCCGGC	1 cut(s)	1143
PfeI	GAWTC	6 cut(s)	344, 542, 598, 638, 728, 983
PflFI	GACNNNGTC	1 cut(s)	1205
PkrI	GCNGC	4 cut(s)	535, 1174, 1187, 1190
PleI	GAGTC	3 cut(s)	556, 623, 1045
PpsI	GAGTC	3 cut(s)	556, 623, 1045
Psp6I	CCWGG	2 cut(s)	22, 1071
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	2 cut(s)	22, 1071
PspN4I	GGNNCC	2 cut(s)	748, 924
PspPI	GGNCC	1 cut(s)	1105
PstI	CTGCAG	1 cut(s)	1190
PsuI	RGATCY	1 cut(s)	794
PsyI	GACNNNGTC	1 cut(s)	1205
RsaI	GTAC	4 cut(s)	289, 748, 935, 1197
RsaNI	GTAC	4 cut(s)	288, 747, 934, 1196
RseI	CAYNNNNRTG	4 cut(s)	410, 842, 941, 1157
SaqAI	TTAA	2 cut(s)	51, 735
SatI	GCNGC	4 cut(s)	534, 1173, 1186, 1189
Sau3AI	GATC	4 cut(s)	693, 794, 814, 993
Sau96I	GGNCC	1 cut(s)	1105
ScaI	AGTACT	1 cut(s)	1197
SchI	GAGTC	3 cut(s)	557, 623, 1046
ScrFI	CCNGG	4 cut(s)	24, 919, 1073, 1122
SfaNI	GCATC	6 cut(s)	9, 143, 520, 596, 610, 1138
SfcI	CTRYAG	1 cut(s)	1186
SinI	GGWCC	1 cut(s)	1105
SmiMI	CAYNNNNRTG	4 cut(s)	410, 842, 941, 1157
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	7 cut(s)	510, 552, 766, 902, 1014, 1260, 1309
SsiI	CCGC	3 cut(s)	649, 1172, 1204
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	4 cut(s)	22, 917, 1071, 1120
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	4 cut(s)	129, 340, 616, 1105
TaqI	TCGA	1 cut(s)	1040
TasI	AATT	7 cut(s)	510, 552, 766, 902, 1014, 1260, 1309
TatI	WGTACW	2 cut(s)	933, 1195
TauI	GCSGC	1 cut(s)	1175
TfiI	GAWTC	6 cut(s)	344, 542, 598, 638, 728, 983
Tru1I	TTAA	2 cut(s)	51, 735
Tru9I	TTAA	2 cut(s)	51, 735
TscAI	CASTG	5 cut(s)	132, 600, 1028, 1259, 1288
TseI	GCWGC	3 cut(s)	533, 1185, 1188
TspDTI	ATGAA	7 cut(s)	58, 346, 666, 731, 1213, 1259, 1335
TspRI	CASTG	5 cut(s)	132, 600, 1028, 1259, 1288
Tth111I	GACNNNGTC	1 cut(s)	1205
VpaK11BI	GGWCC	1 cut(s)	1105
XceI	RCATGY	3 cut(s)	94, 847, 1219
XcmI	CCANNNNNNNNNTGG	2 cut(s)	613, 1159
XmiI	GTMKAC	1 cut(s)	1005
XspI	CTAG	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	1197
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.