Rroxscaffold_1G00024240

von Willebrand factor type A domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
30153138 .. 30154689
1552 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00024240.1

Sequence Viewer

Length: 204 bp
ATGGTCTCGAAATTGTTATATCATGATGGAAAGTTCTGCCTCACCGTGCCTTTTAATTTTCCAGCATATGTTAATCCTGTTGGGAACAAAATTATGAAGGGGGAGAAGATTTCATTGAGTGTGAATATGGGTGCTGAAGCAGAAGTTTTATGCCAAACTATAAGCCATCCTCTTAAGGTGGTCGGCGCCAAAGGGGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.24

Weight (kDa)

8.66

Isoelectric Point (pI)

8.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 156
AcyI GRCGYC 1 cut(s) 186
AflII CTTAAG 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 10
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 34
BanI GGYRCC 1 cut(s) 185
BccI CCATC 2 cut(s) 20, 174
BcoDI GTCTC 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 189
BfrI CTTAAG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 10
BseGI GGATG 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 10
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 186
BstAFI CTTAAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 166
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstMAI GTCTC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 166
CciI TCATGA 1 cut(s) 22
CfoI GCGC 1 cut(s) 188
CviAII CATG 1 cut(s) 23
CviJI RGCY 1 cut(s) 165
CviKI_1 RGCY 1 cut(s) 165
DinI GGCGCC 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 156
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
FaeI CATG 1 cut(s) 26
FaiI YATR 8 cut(s) 19, 24, 67, 69, 95, 128, 151, 161
FatI CATG 1 cut(s) 22
FauNDI CATATG 1 cut(s) 67
FokI GGATG 1 cut(s) 153
GlaI GCGC 1 cut(s) 187
HaeII RGCGCY 1 cut(s) 189
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HphI GGTGA 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 7, 23
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 186
KasI GGCGCC 1 cut(s) 185
LpnPI CCDG 2 cut(s) 75, 90
MboII GAAGA 1 cut(s) 118
MluCI AATT 3 cut(s) 11, 55, 90
Mly113I GGCGCC 1 cut(s) 186
MnlI CCTC 2 cut(s) 50, 180
MseI TTAA 3 cut(s) 54, 72, 174
MspCI CTTAAG 1 cut(s) 173
NarI GGCGCC 1 cut(s) 186
NdeI CATATG 1 cut(s) 67
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 187
PagI TCATGA 1 cut(s) 22
PluTI GGCGCC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 187
SaqAI TTAA 3 cut(s) 54, 72, 174
SetI ASST 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 187
SgeI CNNG 5 cut(s) 19, 35, 58, 74, 89
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 3 cut(s) 11, 55, 90
SspDI GGCGCC 1 cut(s) 185
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 8
TasI AATT 3 cut(s) 11, 55, 90
Tru1I TTAA 3 cut(s) 54, 72, 174
Tru9I TTAA 3 cut(s) 54, 72, 174
TspDTI ATGAA 2 cut(s) 102, 110
Vha464I CTTAAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.