Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004111

Physical Location & Seq

Genomic Coordinates Reverse (-)

81751139 .. 81751793

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTCTCGAAATTGTTATATCATGATGGAAAGTTCTGCCTCACCGTGCCTTTTAATTTTCCAGCATATGTTAATCCTGTTGGGAACAAAATTATGAAGGGGGAGAAGATTTCGTTGAGTGTGAATATGGGTGCTGAAGCAGAAGTTTTATGCCAAACTACAATCCATCCTCTTATGGTGGTCGGGCGCCAAAGCGGTAGATTGAGCTTCTCTTATGAAGCACGACCTCTCGAGAATGCAAAGAGTGCGGTATTGGCATCGCTTTCTAATCTCAACCGGGAAGATACTTTCAACATAATAGCTTTCAATGGAGAGGTTCGCGTATTCTCATCATCAATGGAGTTAGCAACAAATGAAGCATTACCGAAAGCTAAGAATTGGGTTAGCGCTGAATTTATTGCAGATGGAGGTACAAATATGTTACTTCCCCTAAGACAGGCTATGAAGTTGTTGGCCAAAACTGCTGATACAATTCCTTTCATTTTCCTCATTACCGATGAGGCCAAGAGGTGTAGTAGGTCATTGAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA_3

Protein Analysis

177

Amino Acids

19.44

Weight (kDa)

8.81

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VWA_2	PF13519	72 - 167	2.6e-07	von Willebrand factor type A domain
VWA_3	PF13768	76 - 168	2e-06	von Willebrand factor type A domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72500 AT1G72500 AT1G72500
fragaria_vesca	FvH4_6g35050 FvH4_6g35050 FvH4_6g35050 FvH4_6g35050 FvH4_6g35050 FvH4_6g35050 FvH4_6g35050
malus_domestica	MD09G1179800.v1.1 MD17G1165400.v1.1
prunus_persica	Prupe.3G038500_v2.0.a1 Prupe.3G038500_v2.0.a1 Prupe.3G038500_v2.0.a1
pyrus_communis	pycom09g09750 pycom17g15810
rosa_chinensis	RchiOBHm_Chr2g0146211
rosa_laevigata	RLG00000020186
rosa_multiflora	Rmu_ssc0000305.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434910 Rroxscaffold_1G00024240 Rroxscaffold_1G00059690 Rroxscaffold_2G00100240 Rroxscaffold_2G00150940 Rroxscaffold_5G00356980 Rroxscaffold_7G00181760
rosa_rugosa	Rorug02G0393800
rosa_samantha	Rh2AG449800 Rh2BG462000 Rh2CG436700 Rh2DG471300
rosa_wichuraiana	Rw2G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	186
AccII	CGCG	1 cut(s)	321
AciI	CCGC	2 cut(s)	195, 248
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	412
AfeI	AGCGCT	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	292, 307
AluBI	AGCT	3 cut(s)	207, 302, 371
AluI	AGCT	3 cut(s)	207, 302, 371
Alw26I	GTCTC	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	230
Aor51HI	AGCGCT	1 cut(s)	388
AoxI	GGCC	2 cut(s)	453, 501
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	189, 389
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	186
BccI	CCATC	3 cut(s)	20, 174, 398
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	10
BfoI	RGCGCY	2 cut(s)	190, 390
Bme1390I	CCNGG	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	455, 503
BshNI	GGYRCC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	455, 503
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	230
BspACI	CCGC	2 cut(s)	195, 248
BspANI	GGCC	2 cut(s)	455, 503
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	2 cut(s)	22, 530
BspLI	GGNNCC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	10
BssNI	GRCGYC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	372, 431
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	2 cut(s)	190, 390
BstHHI	GCGC	2 cut(s)	189, 389
BstMAI	GTCTC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 254, 461
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	455, 503
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	166
CciI	TCATGA	2 cut(s)	22, 530
CfoI	GCGC	2 cut(s)	189, 389
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	2 cut(s)	23, 531
CviJI	RGCY	6 cut(s)	207, 302, 371, 440, 455, 503
CviKI_1	RGCY	6 cut(s)	207, 302, 371, 440, 455, 503
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	2 cut(s)	372, 431
DinI	GGCGCC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	10
Eco47III	AGCGCT	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EgeI	GGCGCC	1 cut(s)	188
EheI	GGCGCC	1 cut(s)	188
FaeI	CATG	2 cut(s)	26, 534
FatI	CATG	2 cut(s)	22, 530
FauNDI	CATATG	1 cut(s)	67
FokI	GGATG	1 cut(s)	153
GlaI	GCGC	2 cut(s)	188, 388
HaeII	RGCGCY	2 cut(s)	190, 390
HaeIII	GGCC	2 cut(s)	455, 503
HapII	CCGG	1 cut(s)	277
HhaI	GCGC	2 cut(s)	189, 389
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	26, 534
Hin6I	GCGC	2 cut(s)	187, 387
HinP1I	GCGC	2 cut(s)	187, 387
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	1 cut(s)	34
Hpy188III	TCNNGA	5 cut(s)	7, 23, 230, 232, 531
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	239, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 254, 461
HpyF3I	CTNAG	2 cut(s)	372, 431
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	26, 534
HspAI	GCGC	2 cut(s)	187, 387
KasI	GGCGCC	1 cut(s)	186
LpnPI	CCDG	4 cut(s)	75, 90, 290, 422
LweI	GCATC	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	420
MboII	GAAGA	2 cut(s)	118, 293
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	6 cut(s)	11, 55, 90, 376, 392, 471
MluNI	TGGCCA	1 cut(s)	455
Mly113I	GGCGCC	1 cut(s)	187
MnlI	CCTC	8 cut(s)	50, 180, 237, 307, 401, 493, 497, 501
Mox20I	TGGCCA	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	2 cut(s)	54, 72
Msp20I	TGGCCA	1 cut(s)	455
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	241
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	245, 254, 461
NarI	GGCGCC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	278
NdeI	CATATG	1 cut(s)	67
NlaIII	CATG	2 cut(s)	26, 534
NlaIV	GGNNCC	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	230
PagI	TCATGA	2 cut(s)	22, 530
PctI	GAATGC	1 cut(s)	241
PluTI	GGCGCC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	54, 72
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	8 cut(s)	209, 229, 304, 318, 373, 412, 512, 521
SfaNI	GCATC	1 cut(s)	266
SfoI	GGCGCC	1 cut(s)	188
Sfr274I	CTCGAG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	6 cut(s)	11, 55, 90, 376, 392, 471
SsiI	CCGC	2 cut(s)	195, 248
SspDI	GGCGCC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	8, 231
TasI	AATT	6 cut(s)	11, 55, 90, 376, 392, 471
Tru1I	TTAA	2 cut(s)	54, 72
Tru9I	TTAA	2 cut(s)	54, 72
TspDTI	ATGAA	6 cut(s)	110, 231, 369, 458, 469, 519
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.