Rroxscaffold_7G00181760

von Willebrand factor type A domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004111
Physical Location & Seq
Reverse (-)
20829111 .. 20829609
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181760.1

Sequence Viewer

Length: 456 bp
ATGAAGGGGGAGAAGATTTCGTTGAGTGTGAATATGGGTGCTGAAGCAGAAGTTTTATGCCAAACTACAAGCCATCCTCTTAAGGTGGTCGGGCGCCAAAGCGGTAGATTGAGCTTCTCTTATGAAGCACGAGTAGCAGCATGGTCAAGAGATGTTCGCTTCTATTTGATCCCCGGAATAGCCGGACTTGGAAGTGGAAGTATGGCGGGAGACCCTCTTGAGAATGCAAAAAGTGCAGTATTGGCATCGCTTTCTAATCTCAACCGGGAAGATACTTTCAACATAATAGCTTTCAATGGAGAGGTTCGCGTATTCTCATCATCAATGGAGTTAGCAACAAATGAAGCATTACCGAAAGCTAAGAATTGGGTTAGCGCTGAATTTATTGCGGATGGAGGTACAAATATGTTACTTCCCCTAAGACAAAGCTATGAAGTTGTTGGCCAAAACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA_3

Protein Analysis

151

Amino Acids

16.23

Weight (kDa)

5.85

Isoelectric Point (pI)

20.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 65 - 150 6.5e-06 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 93
AccII CGCG 1 cut(s) 309
AciI CCGC 3 cut(s) 102, 206, 389
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 94
AfaI GTAC 1 cut(s) 400
AfeI AGCGCT 1 cut(s) 376
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 280, 295
AluBI AGCT 4 cut(s) 114, 290, 359, 429
AluI AGCT 4 cut(s) 114, 290, 359, 429
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 1 cut(s) 163
Aor51HI AGCGCT 1 cut(s) 376
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 2 cut(s) 96, 377
AsuC2I CCSGG 2 cut(s) 174, 266
BalI TGGCCA 1 cut(s) 444
BanI GGYRCC 1 cut(s) 93
BauI CACGAG 1 cut(s) 129
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 81, 386
BcnI CCSGG 2 cut(s) 174, 266
BcoDI GTCTC 1 cut(s) 204
BfoI RGCGCY 2 cut(s) 97, 378
BfrI CTTAAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 174, 266
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 174, 266
BmsI GCATC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 174, 266
BsaHI GRCGYC 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 73, 397
BseXI GCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 93
BsiSI CCGG 3 cut(s) 174, 183, 265
BsmAI GTCTC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 444
Bso31I GGTCTC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 3 cut(s) 102, 206, 389
BspANI GGCC 1 cut(s) 444
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 93
BspTI CTTAAG 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 94
BssSI CACGAG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 94
BstAFI CTTAAG 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 360, 419
BstF5I GGATG 2 cut(s) 73, 397
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 2 cut(s) 97, 378
BstHHI GCGC 2 cut(s) 96, 377
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 4 cut(s) 134, 233, 242, 450
BstSCI CCNGG 2 cut(s) 172, 264
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 444
BtgZI GCGATG 1 cut(s) 231
BtsCI GGATG 2 cut(s) 73, 397
CfoI GCGC 2 cut(s) 96, 377
Csp6I GTAC 1 cut(s) 399
CviAII CATG 1 cut(s) 141
CviJI RGCY 7 cut(s) 72, 114, 182, 290, 359, 429, 444
CviKI_1 RGCY 7 cut(s) 72, 114, 182, 290, 359, 429, 444
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 2 cut(s) 360, 419
DinI GGCGCC 1 cut(s) 95
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 204
Eco47III AGCGCT 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 63
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
FaeI CATG 1 cut(s) 144
FaiI YATR 8 cut(s) 35, 58, 123, 142, 203, 284, 407, 432
FatI CATG 1 cut(s) 140
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 2 cut(s) 60, 404
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 2 cut(s) 95, 376
GluI GCNGC 1 cut(s) 138
HaeII RGCGCY 2 cut(s) 97, 378
HaeIII GGCC 1 cut(s) 444
HapII CCGG 3 cut(s) 174, 183, 265
HhaI GCGC 2 cut(s) 96, 377
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 1 cut(s) 144
Hin6I GCGC 2 cut(s) 94, 375
HinP1I GCGC 2 cut(s) 94, 375
HpaII CCGG 3 cut(s) 174, 183, 265
Hpy188III TCNNGA 2 cut(s) 147, 218
HpyCH4V TGCA 2 cut(s) 227, 236
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 233, 242, 450
HpyF3I CTNAG 2 cut(s) 360, 419
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 1 cut(s) 144
HspAI GCGC 2 cut(s) 94, 375
KasI GGCGCC 1 cut(s) 93
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 187, 196, 278
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 408
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 2 cut(s) 25, 281
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 2 cut(s) 364, 380
MluNI TGGCCA 1 cut(s) 444
Mly113I GGCGCC 1 cut(s) 94
MnlI CCTC 4 cut(s) 87, 225, 295, 389
Mox20I TGGCCA 1 cut(s) 444
MscI TGGCCA 1 cut(s) 444
MseI TTAA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 444
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 3 cut(s) 174, 183, 265
MspR9I CCNGG 2 cut(s) 174, 266
Mva1269I GAATGC 1 cut(s) 229
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 4 cut(s) 134, 233, 242, 450
NarI GGCGCC 1 cut(s) 94
NciI CCSGG 2 cut(s) 174, 266
NdeII GATC 1 cut(s) 168
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 1 cut(s) 95
PctI GAATGC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 139
PluTI GGCGCC 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 95
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 168
ScrFI CCNGG 2 cut(s) 174, 266
SetI ASST 7 cut(s) 87, 116, 292, 306, 361, 400, 431
SfaNI GCATC 1 cut(s) 254
SfoI GGCGCC 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 80, 218
SmoI CTYRAG 2 cut(s) 80, 218
Sse9I AATT 2 cut(s) 364, 380
SsiI CCGC 3 cut(s) 102, 206, 389
SspDI GGCGCC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 172, 264
TasI AATT 2 cut(s) 364, 380
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 17, 138, 357, 447
Vha464I CTTAAG 1 cut(s) 80
XapI RAATTY 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.