Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21300 |
| fragaria_vesca | FvH4_6g32800 FvH4_6g32800 FvH4_6g32800 FvH4_6g32800 FvH4_6g32800 FvH4_6g32800 FvH4_6g32800 FvH4_6g32800 FvH4_6g32800 |
| malus_domestica | MD17G1179000.v1.1 |
| prunus_persica | Prupe.3G054000_v2.0.a1 |
| pyrus_communis | pycom17g18800 |
| rosa_chinensis | RchiOBHm_Chr2g0141991 |
| rosa_laevigata | RLG00000019944 |
| rosa_multiflora | Rmu_sc0004757.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00103680 |
| rosa_rugosa | Rorug02G0369500 Rorug02G0369500 |
| rosa_samantha | Rh2AG422200 Rh2BG432300 Rh2CG409200 Rh2DG442100 |
| rosa_wichuraiana | Rw2G034590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 518, 1590 |
| Acc65I | GGTACC | 1 cut(s) | 13 |
| AccB1I | GGYRCC | 3 cut(s) | 13, 1238, 1489 |
| AccBSI | CCGCTC | 1 cut(s) | 325 |
| AccI | GTMKAC | 1 cut(s) | 1614 |
| AccII | CGCG | 2 cut(s) | 309, 311 |
| AciI | CCGC | 4 cut(s) | 180, 307, 325, 890 |
| AclWI | GGATC | 3 cut(s) | 800, 1377, 1427 |
| AcsI | RAATTY | 2 cut(s) | 460, 1402 |
| AcuI | CTGAAG | 1 cut(s) | 1008 |
| AcvI | CACGTG | 1 cut(s) | 76 |
| AcyI | GRCGYC | 1 cut(s) | 1490 |
| AfaI | GTAC | 3 cut(s) | 15, 200, 1605 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 62, 179, 212, 324, 815, 991, 1153 |
| AflII | CTTAAG | 4 cut(s) | 857, 953, 1090, 1484 |
| AflIII | ACRYGT | 3 cut(s) | 1273, 1526, 1617 |
| AgsI | TTSAA | 3 cut(s) | 253, 968, 1109 |
| AjnI | CCWGG | 5 cut(s) | 123, 693, 709, 1146, 1444 |
| AluBI | AGCT | 8 cut(s) | 229, 488, 949, 980, 1333, 1483, 1594, 1663 |
| AluI | AGCT | 8 cut(s) | 229, 488, 949, 980, 1333, 1483, 1594, 1663 |
| Alw21I | GWGCWC | 1 cut(s) | 1534 |
| Alw26I | GTCTC | 7 cut(s) | 246, 275, 377, 661, 824, 887, 1193 |
| AlwI | GGATC | 3 cut(s) | 800, 1377, 1427 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 223, 284 |
| AoxI | GGCC | 1 cut(s) | 1266 |
| ApeKI | GCWGC | 3 cut(s) | 313, 496, 949 |
| ApoI | RAATTY | 2 cut(s) | 460, 1402 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 532, 1293 |
| Asp718I | GGTACC | 1 cut(s) | 13 |
| AspLEI | GCGC | 5 cut(s) | 83, 311, 313, 478, 1492 |
| AspS9I | GGNCC | 2 cut(s) | 357, 1266 |
| AsuC2I | CCSGG | 1 cut(s) | 318 |
| AsuHPI | GGTGA | 3 cut(s) | 58, 382, 1136 |
| AvaII | GGWCC | 1 cut(s) | 357 |
| BanI | GGYRCC | 3 cut(s) | 13, 1238, 1489 |
| BauI | CACGAG | 2 cut(s) | 506, 1533 |
| BbrPI | CACGTG | 1 cut(s) | 76 |
| BbsI | GAAGAC | 2 cut(s) | 159, 893 |
| Bbv12I | GWGCWC | 1 cut(s) | 1534 |
| BbvCI | CCTCAGC | 1 cut(s) | 366 |
| BbvI | GCAGC | 3 cut(s) | 300, 508, 936 |
| BccI | CCATC | 5 cut(s) | 581, 607, 655, 668, 1193 |
| BciT130I | CCWGG | 5 cut(s) | 125, 695, 711, 1148, 1446 |
| BcnI | CCSGG | 1 cut(s) | 318 |
| BcoDI | GTCTC | 7 cut(s) | 246, 275, 377, 661, 824, 887, 1193 |
| BfmI | CTRYAG | 1 cut(s) | 783 |
| BfoI | RGCGCY | 2 cut(s) | 84, 1493 |
| BfrI | CTTAAG | 4 cut(s) | 857, 953, 1090, 1484 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1265 |
| BisI | GCNGC | 4 cut(s) | 181, 314, 497, 950 |
| BlsI | GCNGC | 4 cut(s) | 182, 315, 498, 951 |
| Bme1390I | CCNGG | 6 cut(s) | 125, 318, 695, 711, 1148, 1446 |
| Bme18I | GGWCC | 1 cut(s) | 357 |
| BmgT120I | GGNCC | 2 cut(s) | 357, 1266 |
| BmiI | GGNNCC | 6 cut(s) | 15, 98, 358, 1234, 1240, 1491 |
| BmrFI | CCNGG | 6 cut(s) | 125, 318, 695, 711, 1148, 1446 |
| BmrI | ACTGGG | 1 cut(s) | 294 |
| BmsI | GCATC | 5 cut(s) | 570, 871, 1086, 1303, 1350 |
| BmuI | ACTGGG | 1 cut(s) | 294 |
| BpiI | GAAGAC | 2 cut(s) | 159, 893 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 328, 360 |
| BpmI | CTGGAG | 1 cut(s) | 245 |
| Bpu10I | CCTNAGC | 3 cut(s) | 366, 489, 1410 |
| BpuEI | CTTGAG | 1 cut(s) | 1284 |
| BpuMI | CCSGG | 1 cut(s) | 318 |
| BsaAI | YACGTR | 1 cut(s) | 76 |
| BsaHI | GRCGYC | 1 cut(s) | 1490 |
| BsaI | GGTCTC | 2 cut(s) | 824, 1193 |
| BsaJI | CCNNGG | 8 cut(s) | 92, 123, 398, 648, 693, 694, 1363, 1493 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 218, 248, 376, 406 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 62, 179, 212, 324, 815, 991, 1153 |
| Bse118I | RCCGGY | 2 cut(s) | 763, 1235 |
| Bse1I | ACTGG | 6 cut(s) | 289, 552, 592, 883, 901, 1610 |
| Bse3DI | GCAATG | 1 cut(s) | 1305 |
| BseBI | CCWGG | 5 cut(s) | 125, 695, 711, 1148, 1446 |
| BseDI | CCNNGG | 8 cut(s) | 92, 123, 398, 648, 693, 694, 1363, 1493 |
| BseGI | GGATG | 2 cut(s) | 452, 1341 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 62, 179, 212, 324, 815, 991, 1153 |
| BseMI | GCAATG | 1 cut(s) | 1305 |
| BseMII | CTCAG | 5 cut(s) | 59, 357, 1204, 1218, 1557 |
| BseNI | ACTGG | 6 cut(s) | 289, 552, 592, 883, 901, 1610 |
| BsePI | GCGCGC | 1 cut(s) | 309 |
| BseRI | GAGGAG | 4 cut(s) | 127, 384, 1209, 1623 |
| BseXI | GCAGC | 3 cut(s) | 300, 508, 936 |
| BseYI | CCCAGC | 2 cut(s) | 34, 168 |
| Bsh1236I | CGCG | 2 cut(s) | 309, 311 |
| Bsh1285I | CGRYCG | 1 cut(s) | 307 |
| BshFI | GGCC | 1 cut(s) | 1268 |
| BshNI | GGYRCC | 3 cut(s) | 13, 1238, 1489 |
| BsiEI | CGRYCG | 1 cut(s) | 307 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1534 |
| BsiSI | CCGG | 4 cut(s) | 318, 349, 764, 1236 |
| BslFI | GGGAC | 2 cut(s) | 370, 416 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 62, 179, 212, 324, 815, 991, 1153 |
| BsmAI | GTCTC | 7 cut(s) | 246, 275, 377, 661, 824, 887, 1193 |
| BsmFI | GGGAC | 2 cut(s) | 370, 416 |
| BsmI | GAATGC | 3 cut(s) | 892, 1354, 1455 |
| BsnI | GGCC | 1 cut(s) | 1268 |
| Bso31I | GGTCTC | 2 cut(s) | 824, 1193 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1534 |
| Bsp143I | GATC | 3 cut(s) | 805, 1369, 1432 |
| BspACI | CCGC | 4 cut(s) | 180, 307, 325, 890 |
| BspANI | GGCC | 1 cut(s) | 1268 |
| BspCNI | CTCAG | 5 cut(s) | 60, 358, 1203, 1217, 1558 |
| BspFNI | CGCG | 2 cut(s) | 309, 311 |
| BspHI | TCATGA | 2 cut(s) | 564, 1002 |
| BspLI | GGNNCC | 6 cut(s) | 15, 98, 358, 1234, 1240, 1491 |
| BspPI | GGATC | 3 cut(s) | 800, 1377, 1427 |
| BspT107I | GGYRCC | 3 cut(s) | 13, 1238, 1489 |
| BspTI | CTTAAG | 4 cut(s) | 857, 953, 1090, 1484 |
| BspTNI | GGTCTC | 2 cut(s) | 824, 1193 |
| BsrBI | CCGCTC | 1 cut(s) | 325 |
| BsrDI | GCAATG | 1 cut(s) | 1305 |
| BsrFI | RCCGGY | 2 cut(s) | 763, 1235 |
| BsrI | ACTGG | 6 cut(s) | 289, 552, 592, 883, 901, 1610 |
| BssAI | RCCGGY | 2 cut(s) | 763, 1235 |
| BssECI | CCNNGG | 8 cut(s) | 92, 123, 398, 648, 693, 694, 1363, 1493 |
| BssHII | GCGCGC | 1 cut(s) | 309 |
| BssMI | GATC | 3 cut(s) | 805, 1369, 1432 |
| BssNI | GRCGYC | 1 cut(s) | 1490 |
| BssSI | CACGAG | 2 cut(s) | 506, 1533 |
| BssT1I | CCWWGG | 3 cut(s) | 398, 648, 1363 |
| Bst2BI | CACGAG | 2 cut(s) | 506, 1533 |
| Bst2UI | CCWGG | 5 cut(s) | 125, 695, 711, 1148, 1446 |
| Bst4CI | ACNGT | 4 cut(s) | 13, 440, 797, 1442 |
| Bst6I | CTCTTC | 1 cut(s) | 966 |
| BstACI | GRCGYC | 1 cut(s) | 1490 |
| BstAFI | CTTAAG | 4 cut(s) | 857, 953, 1090, 1484 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 868 |
| BstBAI | YACGTR | 1 cut(s) | 76 |
| BstC8I | GCNNGC | 5 cut(s) | 165, 311, 323, 705, 765 |
| BstDEI | CTNAG | 8 cut(s) | 68, 366, 489, 872, 1190, 1204, 1410, 1566 |
| BstDSI | CCRYGG | 2 cut(s) | 92, 1493 |
| BstEII | GGTNACC | 1 cut(s) | 642 |
| BstF5I | GGATG | 2 cut(s) | 452, 1341 |
| BstFNI | CGCG | 2 cut(s) | 309, 311 |
| BstH2I | RGCGCY | 2 cut(s) | 84, 1493 |
| BstHHI | GCGC | 5 cut(s) | 83, 311, 313, 478, 1492 |
| BstKTI | GATC | 3 cut(s) | 808, 1372, 1435 |
| BstMAI | GTCTC | 7 cut(s) | 246, 275, 377, 661, 824, 887, 1193 |
| BstMBI | GATC | 3 cut(s) | 805, 1369, 1432 |
| BstMCI | CGRYCG | 1 cut(s) | 307 |
| BstNI | CCWGG | 5 cut(s) | 125, 695, 711, 1148, 1446 |
| BstNSI | RCATGY | 5 cut(s) | 167, 707, 1277, 1530, 1621 |
| BstPI | GGTNACC | 1 cut(s) | 642 |
| BstSCI | CCNGG | 6 cut(s) | 123, 316, 693, 709, 1146, 1444 |
| BstSFI | CTRYAG | 1 cut(s) | 783 |
| BstUI | CGCG | 2 cut(s) | 309, 311 |
| BstV1I | GCAGC | 3 cut(s) | 300, 508, 936 |
| BstV2I | GAAGAC | 2 cut(s) | 159, 893 |
| BstX2I | RGATCY | 3 cut(s) | 805, 1369, 1432 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 124 |
| BstYI | RGATCY | 3 cut(s) | 805, 1369, 1432 |
| BsuRI | GGCC | 1 cut(s) | 1268 |
| BtgI | CCRYGG | 2 cut(s) | 92, 1493 |
| BtsCI | GGATG | 2 cut(s) | 452, 1341 |
| Cac8I | GCNNGC | 5 cut(s) | 165, 311, 323, 705, 765 |
| CaiI | CAGNNNCTG | 2 cut(s) | 223, 284 |
| CciI | TCATGA | 2 cut(s) | 564, 1002 |
| CfoI | GCGC | 5 cut(s) | 83, 311, 313, 478, 1492 |
| Cfr10I | RCCGGY | 2 cut(s) | 763, 1235 |
| Cfr13I | GGNCC | 2 cut(s) | 357, 1266 |
| CseI | GACGC | 1 cut(s) | 422 |
| Csp6I | GTAC | 3 cut(s) | 14, 199, 1604 |
| CviQI | GTAC | 3 cut(s) | 14, 199, 1604 |
| DdeI | CTNAG | 8 cut(s) | 68, 366, 489, 872, 1190, 1204, 1410, 1566 |
| DinI | GGCGCC | 1 cut(s) | 1491 |
| DpnI | GATC | 3 cut(s) | 807, 1371, 1434 |
| DpnII | GATC | 3 cut(s) | 805, 1369, 1432 |
| Eam1104I | CTCTTC | 1 cut(s) | 966 |
| EarI | CTCTTC | 1 cut(s) | 966 |
| Eco130I | CCWWGG | 3 cut(s) | 398, 648, 1363 |
| Eco31I | GGTCTC | 2 cut(s) | 824, 1193 |
| Eco32I | GATATC | 2 cut(s) | 975, 1472 |
| Eco47I | GGWCC | 1 cut(s) | 357 |
| Eco57I | CTGAAG | 1 cut(s) | 1008 |
| Eco72I | CACGTG | 1 cut(s) | 76 |
| Eco91I | GGTNACC | 1 cut(s) | 642 |
| EcoO109I | RGGNCCY | 1 cut(s) | 357 |
| EcoO65I | GGTNACC | 1 cut(s) | 642 |
| EcoRII | CCWGG | 5 cut(s) | 123, 693, 709, 1146, 1444 |
| EcoRV | GATATC | 2 cut(s) | 975, 1472 |
| EcoT14I | CCWWGG | 3 cut(s) | 398, 648, 1363 |
| EgeI | GGCGCC | 1 cut(s) | 1491 |
| EheI | GGCGCC | 1 cut(s) | 1491 |
| ErhI | CCWWGG | 3 cut(s) | 398, 648, 1363 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1356, 1388 |
| FaqI | GGGAC | 2 cut(s) | 370, 416 |
| FblI | GTMKAC | 1 cut(s) | 1614 |
| Fnu4HI | GCNGC | 4 cut(s) | 181, 314, 497, 950 |
| FokI | GGATG | 2 cut(s) | 459, 1328 |
| Fsp4HI | GCNGC | 4 cut(s) | 181, 314, 497, 950 |
| GlaI | GCGC | 5 cut(s) | 82, 310, 312, 477, 1491 |
| GluI | GCNGC | 4 cut(s) | 181, 314, 497, 950 |
| GsaI | CCCAGC | 2 cut(s) | 38, 172 |
| GsuI | CTGGAG | 1 cut(s) | 245 |
| HaeII | RGCGCY | 2 cut(s) | 84, 1493 |
| HaeIII | GGCC | 1 cut(s) | 1268 |
| HapII | CCGG | 4 cut(s) | 318, 349, 764, 1236 |
| HgaI | GACGC | 1 cut(s) | 422 |
| HhaI | GCGC | 5 cut(s) | 83, 311, 313, 478, 1492 |
| Hin1I | GRCGYC | 1 cut(s) | 1490 |
| Hin6I | GCGC | 5 cut(s) | 81, 309, 311, 476, 1490 |
| HinP1I | GCGC | 5 cut(s) | 81, 309, 311, 476, 1490 |
| HincII | GTYRAC | 2 cut(s) | 739, 1251 |
| HindII | GTYRAC | 2 cut(s) | 739, 1251 |
| HindIII | AAGCTT | 1 cut(s) | 1481 |
| HinfI | GANTC | 6 cut(s) | 58, 155, 220, 239, 551, 714 |
| HpaII | CCGG | 4 cut(s) | 318, 349, 764, 1236 |
| HphI | GGTGA | 3 cut(s) | 58, 382, 1136 |
| Hpy166II | GTNNAC | 7 cut(s) | 49, 412, 505, 739, 838, 1251, 1615 |
| Hpy188I | TCNGA | 6 cut(s) | 160, 207, 732, 1193, 1207, 1432 |
| Hpy188III | TCNNGA | 9 cut(s) | 224, 506, 565, 905, 965, 1003, 1217, 1345, 1535 |
| Hpy8I | GTNNAC | 7 cut(s) | 49, 412, 505, 739, 838, 1251, 1615 |
| Hpy99I | CGWCG | 2 cut(s) | 114, 296 |
| HpyAV | CCTTC | 4 cut(s) | 115, 876, 1257, 1574 |
| HpyCH4III | ACNGT | 4 cut(s) | 13, 440, 797, 1442 |
| HpyCH4IV | ACGT | 3 cut(s) | 51, 75, 834 |
| HpyCH4V | TGCA | 5 cut(s) | 270, 703, 754, 1310, 1453 |
| HpyF3I | CTNAG | 8 cut(s) | 68, 366, 489, 872, 1190, 1204, 1410, 1566 |
| HpySE526I | ACGT | 3 cut(s) | 51, 75, 834 |
| Hsp92I | GRCGYC | 1 cut(s) | 1490 |
| HspAI | GCGC | 5 cut(s) | 81, 309, 311, 476, 1490 |
| KasI | GGCGCC | 1 cut(s) | 1489 |
| KpnI | GGTACC | 1 cut(s) | 17 |
| KroI | GCCGGC | 1 cut(s) | 763 |
| KroNI | GCCGGC | 1 cut(s) | 765 |
| Kzo9I | GATC | 3 cut(s) | 805, 1369, 1432 |
| LmnI | GCTCC | 8 cut(s) | 102, 119, 160, 226, 421, 493, 712, 1660 |
| Lsp1109I | GCAGC | 3 cut(s) | 300, 508, 936 |
| LweI | GCATC | 5 cut(s) | 570, 871, 1086, 1303, 1350 |
| MaeII | ACGT | 3 cut(s) | 51, 75, 834 |
| MaeIII | GTNAC | 8 cut(s) | 59, 340, 370, 642, 925, 1028, 1535, 1561 |
| MalI | GATC | 3 cut(s) | 807, 1371, 1434 |
| MbiI | CCGCTC | 1 cut(s) | 325 |
| MboI | GATC | 3 cut(s) | 805, 1369, 1432 |
| MboII | GAAGA | 7 cut(s) | 164, 709, 893, 953, 1120, 1187, 1466 |
| MflI | RGATCY | 3 cut(s) | 805, 1369, 1432 |
| MhlI | GDGCHC | 1 cut(s) | 1534 |
| Mly113I | GGCGCC | 1 cut(s) | 1490 |
| MlyI | GAGTC | 4 cut(s) | 67, 149, 214, 248 |
| MmeI | TCCRAC | 2 cut(s) | 779, 829 |
| MroNI | GCCGGC | 1 cut(s) | 763 |
| MroXI | GAANNNNTTC | 2 cut(s) | 532, 1293 |
| MseI | TTAA | 7 cut(s) | 557, 858, 918, 954, 1091, 1374, 1485 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1278 |
| MspCI | CTTAAG | 4 cut(s) | 857, 953, 1090, 1484 |
| MspI | CCGG | 4 cut(s) | 318, 349, 764, 1236 |
| MspR9I | CCNGG | 6 cut(s) | 125, 318, 695, 711, 1148, 1446 |
| Mva1269I | GAATGC | 3 cut(s) | 892, 1354, 1455 |
| MvaI | CCWGG | 5 cut(s) | 125, 695, 711, 1148, 1446 |
| MvnI | CGCG | 2 cut(s) | 309, 311 |
| NaeI | GCCGGC | 1 cut(s) | 765 |
| NarI | GGCGCC | 1 cut(s) | 1490 |
| NciI | CCSGG | 1 cut(s) | 318 |
| NdeII | GATC | 3 cut(s) | 805, 1369, 1432 |
| NgoMIV | GCCGGC | 1 cut(s) | 763 |
| NlaIV | GGNNCC | 6 cut(s) | 15, 98, 358, 1234, 1240, 1491 |
| NmeAIII | GCCGAG | 2 cut(s) | 81, 1354 |
| NmuCI | GTSAC | 5 cut(s) | 59, 370, 925, 1535, 1561 |
| NspI | RCATGY | 5 cut(s) | 167, 707, 1277, 1530, 1621 |
| PaeI | GCATGC | 2 cut(s) | 167, 707 |
| PagI | TCATGA | 2 cut(s) | 564, 1002 |
| PasI | CCCWGGG | 1 cut(s) | 694 |
| PauI | GCGCGC | 1 cut(s) | 309 |
| PciI | ACATGT | 3 cut(s) | 1273, 1526, 1617 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 203, 300, 582 |
| PctI | GAATGC | 3 cut(s) | 892, 1354, 1455 |
| PdiI | GCCGGC | 1 cut(s) | 765 |
| PdmI | GAANNNNTTC | 2 cut(s) | 532, 1293 |
| PfeI | GAWTC | 2 cut(s) | 551, 714 |
| PfoI | TCCNGGA | 2 cut(s) | 709, 1444 |
| PkrI | GCNGC | 4 cut(s) | 182, 315, 498, 951 |
| PleI | GAGTC | 4 cut(s) | 66, 149, 214, 247 |
| PluTI | GGCGCC | 1 cut(s) | 1493 |
| PmaCI | CACGTG | 1 cut(s) | 76 |
| PmlI | CACGTG | 1 cut(s) | 76 |
| PpsI | GAGTC | 4 cut(s) | 66, 149, 214, 247 |
| Ppu21I | YACGTR | 1 cut(s) | 76 |
| PpuMI | RGGWCCY | 1 cut(s) | 357 |
| PscI | ACATGT | 3 cut(s) | 1273, 1526, 1617 |
| PsiI | TTATAA | 2 cut(s) | 518, 1590 |
| Psp5II | RGGWCCY | 1 cut(s) | 357 |
| Psp6I | CCWGG | 5 cut(s) | 123, 693, 709, 1146, 1444 |
| PspCI | CACGTG | 1 cut(s) | 76 |
| PspEI | GGTNACC | 1 cut(s) | 642 |
| PspFI | CCCAGC | 2 cut(s) | 34, 168 |
| PspGI | CCWGG | 5 cut(s) | 123, 693, 709, 1146, 1444 |
| PspN4I | GGNNCC | 6 cut(s) | 15, 98, 358, 1234, 1240, 1491 |
| PspPI | GGNCC | 2 cut(s) | 357, 1266 |
| PspPPI | RGGWCCY | 1 cut(s) | 357 |
| PstNI | CAGNNNCTG | 2 cut(s) | 223, 284 |
| PsuI | RGATCY | 3 cut(s) | 805, 1369, 1432 |
| PteI | GCGCGC | 1 cut(s) | 309 |
| RsaI | GTAC | 3 cut(s) | 15, 200, 1605 |
| RsaNI | GTAC | 3 cut(s) | 14, 199, 1604 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1278 |
| SaqAI | TTAA | 7 cut(s) | 557, 858, 918, 954, 1091, 1374, 1485 |
| SatI | GCNGC | 4 cut(s) | 181, 314, 497, 950 |
| Sau3AI | GATC | 3 cut(s) | 805, 1369, 1432 |
| Sau96I | GGNCC | 2 cut(s) | 357, 1266 |
| SchI | GAGTC | 4 cut(s) | 67, 149, 214, 248 |
| ScrFI | CCNGG | 6 cut(s) | 125, 318, 695, 711, 1148, 1446 |
| SduI | GDGCHC | 1 cut(s) | 1534 |
| SfaNI | GCATC | 5 cut(s) | 570, 871, 1086, 1303, 1350 |
| SfcI | CTRYAG | 1 cut(s) | 783 |
| SfoI | GGCGCC | 1 cut(s) | 1491 |
| SinI | GGWCC | 1 cut(s) | 357 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1278 |
| SmlI | CTYRAG | 5 cut(s) | 857, 953, 1090, 1299, 1484 |
| SmoI | CTYRAG | 5 cut(s) | 857, 953, 1090, 1299, 1484 |
| SphI | GCATGC | 2 cut(s) | 167, 707 |
| SsiI | CCGC | 4 cut(s) | 180, 307, 325, 890 |
| SspDI | GGCGCC | 1 cut(s) | 1489 |
| StyD4I | CCNGG | 6 cut(s) | 123, 316, 693, 709, 1146, 1444 |
| StyI | CCWWGG | 3 cut(s) | 398, 648, 1363 |
| TaaI | ACNGT | 4 cut(s) | 13, 440, 797, 1442 |
| TaiI | ACGT | 3 cut(s) | 54, 78, 837 |
| TaqI | TCGA | 1 cut(s) | 720 |
| TauI | GCSGC | 1 cut(s) | 183 |
| TfiI | GAWTC | 2 cut(s) | 551, 714 |
| Tru1I | TTAA | 7 cut(s) | 557, 858, 918, 954, 1091, 1374, 1485 |
| Tru9I | TTAA | 7 cut(s) | 557, 858, 918, 954, 1091, 1374, 1485 |
| TseFI | GTSAC | 5 cut(s) | 59, 370, 925, 1535, 1561 |
| TseI | GCWGC | 3 cut(s) | 313, 496, 949 |
| Tsp45I | GTSAC | 5 cut(s) | 59, 370, 925, 1535, 1561 |
| TspDTI | ATGAA | 7 cut(s) | 581, 587, 1019, 1179, 1302, 1401, 1472 |
| TspGWI | ACGGA | 4 cut(s) | 78, 98, 1097, 1510 |
| Vha464I | CTTAAG | 4 cut(s) | 857, 953, 1090, 1484 |
| VpaK11BI | GGWCC | 1 cut(s) | 357 |
| XapI | RAATTY | 2 cut(s) | 460, 1402 |
| XceI | RCATGY | 5 cut(s) | 167, 707, 1277, 1530, 1621 |
| XmiI | GTMKAC | 1 cut(s) | 1614 |
| XmnI | GAANNNNTTC | 2 cut(s) | 532, 1293 |