pycom17g19650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014145
Physical Location & Seq
Forward (+)
17580231 .. 17583168
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1131 bp
ATGGCCCAAAGTACACAGGAGCGAAAACATAACGGAAAAACGAAAAATCAAACTGGAAAAGCTCCATGCTTTGTGCTTTTCATGATTAAACTTCCGGTTCGTAGAATGGCGGAATGGGAGAGCGTCGGATCGTATCGTATCGGACTCGACGAGTCGCATCGGTCTCTGCCGTCGGTCTACTTAGCCTTCTTGACAATCTGGTTCGTCTCCGCCTGCTTCTGGACCTTCAACACCTACAAAAACCGCCATCTCCAGACGAATAATTTGCAGTGGACGCTCGCTTCTGTTCCGCTGATTAAAGCCTTGCAACTTACATTGTCTTTCCTCTTCTGGTATTCATGCTTTCATCTTCATATATGCTCCCTGTGGATGTCGTTTGGGATGTATGTAACCGGTGTGATATTTCAGACAGCTTCTTTTGTGTCTTTTTTACTCATCTCCCATGGTTACTGCATCATGTGTGAGCGCCTTTCAGTGACTGAGCGGCGTACTACTGCTTCCCTGGGCTGTGTCTTTTACTTGACTCTTGTCGGATACAAAGCTTCTGTACCTTATTTCTCTGTCTTGCTGCTGCTTAGCTATTTCATCTCATTCTATGTGATATTTCACCATATTTCGCAAAATCTTTTAGTATTGCGCCACCAATTAAGCTTCATAGATGACGAAGATGTTCATGCAATGCATGATGCAGTCTATACAAAGTACATCATGTTCAAAAAGTTTCAAGGTGCAATGCAGATAGTAGCCGTGACTGAGGCTGTGATATACATTAACATGGATGACTCATCAGAAAATTACTGGATTCGCTTGTTAGTTCGAGAATGGGCACAGTTCTGCATCTTTGTTTACATCGGGTGGACTTTTAGATCGAGGGACTTGGCACCACGGTTTTCCGTTATGCCAACATTGAAATCTAAAGGAGAACTAGTGGTGCCTCCCATTTATAGCATTGAAATGGATGCAGAAACTTTCAGAGATTTCACTAAGCATGAATGGCACATTGGAGTGCCAACTTCACCATCTTGCGAAGAAAGCGCTAAGGATTCTGTCTTGGTAATAATTCAGCATCCGCACGCATATAGAACTGCAGCCAGAAAATCTTCTCACATCCAAGACCAGAAGCCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

377

Amino Acids

43.69

Weight (kDa)

8.85

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 880, 931
AccBSI CCGCTC 1 cut(s) 484
AccI GTMKAC 1 cut(s) 177
AciI CCGC 6 cut(s) 110, 210, 244, 290, 484, 1070
AclWI GGATC 1 cut(s) 136
AfaI GTAC 4 cut(s) 13, 490, 549, 704
AfeI AGCGCT 1 cut(s) 1036
AfiI CCNNNNNNNGG 1 cut(s) 219
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 5 cut(s) 229, 715, 725, 910, 953
AhlI ACTAGT 1 cut(s) 925
AjnI CCWGG 1 cut(s) 501
AjuI GAANNNNNNNTTGG 2 cut(s) 984, 1016
AluBI AGCT 5 cut(s) 62, 413, 542, 579, 651
AluI AGCT 5 cut(s) 62, 413, 542, 579, 651
Alw26I GTCTC 2 cut(s) 168, 211
AlwI GGATC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 479
Aor51HI AGCGCT 1 cut(s) 1036
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 568, 571, 1088
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
AsiGI ACCGGT 1 cut(s) 392
Asp700I GAANNNNTTC 2 cut(s) 669, 1099
AspLEI GCGC 3 cut(s) 468, 639, 1037
AspS9I GGNCC 2 cut(s) 4, 222
AsuHPI GGTGA 2 cut(s) 599, 1008
AvaII GGWCC 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 829
BanI GGYRCC 2 cut(s) 880, 931
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
BbvI GCAGC 3 cut(s) 555, 558, 1100
BccI CCATC 2 cut(s) 255, 1027
BceAI ACGGC 2 cut(s) 154, 731
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 1 cut(s) 503
BciVI GTATCC 1 cut(s) 527
BcoDI GTCTC 2 cut(s) 168, 211
BcuI ACTAGT 1 cut(s) 925
BfaI CTAG 1 cut(s) 926
BfmI CTRYAG 1 cut(s) 1086
BfoI RGCGCY 2 cut(s) 469, 1038
BfuI GTATCC 1 cut(s) 527
BisI GCNGC 4 cut(s) 485, 569, 572, 1089
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 4 cut(s) 486, 570, 573, 1090
Bme1390I CCNGG 1 cut(s) 503
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 2 cut(s) 4, 222
BmiI GGNNCC 2 cut(s) 882, 933
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 6 cut(s) 166, 462, 676, 846, 949, 1075
BoxI GACNNNNGTC 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 1038
Bpu1102I GCTNAGC 1 cut(s) 575
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 4 cut(s) 442, 501, 502, 884
BsaWI WCCGGW 2 cut(s) 94, 392
BsaXI ACNNNNNCTCC 2 cut(s) 912, 942
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 3 cut(s) 58, 803, 1124
Bse3DI GCAATG 2 cut(s) 684, 738
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 4 cut(s) 442, 501, 502, 884
BseGI GGATG 6 cut(s) 375, 387, 784, 964, 1066, 1107
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 2 cut(s) 684, 738
BseMII CTCAG 2 cut(s) 471, 744
BseNI ACTGG 3 cut(s) 58, 803, 1124
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 3 cut(s) 555, 558, 1100
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 880, 931
BshTI ACCGGT 1 cut(s) 392
BsiSI CCGG 2 cut(s) 95, 393
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 168, 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 887
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 829
Bsp143I GATC 2 cut(s) 128, 866
Bsp1720I GCTNAGC 1 cut(s) 575
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 6 cut(s) 110, 210, 244, 290, 484, 1070
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 472, 745
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 882, 933
BspMAI CTGCAG 1 cut(s) 1090
BspPI GGATC 1 cut(s) 136
BspT107I GGYRCC 2 cut(s) 880, 931
BspTNI GGTCTC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 484
BsrDI GCAATG 2 cut(s) 684, 738
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 3 cut(s) 58, 803, 1124
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 4 cut(s) 442, 501, 502, 884
BssMI GATC 2 cut(s) 128, 866
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 2 cut(s) 831, 888
Bst6I CTCTTC 1 cut(s) 332
BstC8I GCNNGC 3 cut(s) 214, 279, 1074
BstDEI CTNAG 6 cut(s) 181, 480, 575, 753, 984, 1038
BstDSI CCRYGG 2 cut(s) 442, 884
BstF5I GGATG 6 cut(s) 375, 387, 784, 964, 1066, 1107
BstH2I RGCGCY 2 cut(s) 469, 1038
BstHHI GCGC 3 cut(s) 468, 639, 1037
BstKTI GATC 2 cut(s) 131, 869
BstMAI GTCTC 2 cut(s) 168, 211
BstMBI GATC 2 cut(s) 128, 866
BstMWI GCNNNNNNNGC 3 cut(s) 274, 994, 1032
BstNI CCWGG 1 cut(s) 503
BstPAI GACNNNNGTC 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 501
BstSFI CTRYAG 1 cut(s) 1086
BstSLI GKGCMC 1 cut(s) 829
BstV1I GCAGC 3 cut(s) 555, 558, 1100
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 442, 884
BtsCI GGATG 6 cut(s) 375, 387, 784, 964, 1066, 1107
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 3 cut(s) 275, 480, 1131
Cac8I GCNNGC 3 cut(s) 214, 279, 1074
CaiI CAGNNNCTG 1 cut(s) 479
CciI TCATGA 1 cut(s) 81
CfoI GCGC 3 cut(s) 468, 639, 1037
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 2 cut(s) 4, 222
CseI GACGC 2 cut(s) 112, 283
Csp6I GTAC 4 cut(s) 12, 489, 548, 703
CspAI ACCGGT 1 cut(s) 392
CviQI GTAC 4 cut(s) 12, 489, 548, 703
DdeI CTNAG 6 cut(s) 181, 480, 575, 753, 984, 1038
DpnI GATC 2 cut(s) 130, 868
DpnII GATC 2 cut(s) 128, 866
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
EciI GGCGGA 2 cut(s) 125, 199
Eco130I CCWWGG 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 222
Eco47III AGCGCT 1 cut(s) 1036
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 211
FaqI GGGAC 1 cut(s) 887
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 485, 569, 572, 1089
FokI GGATG 6 cut(s) 382, 394, 791, 971, 1053, 1094
Fsp4HI GCNGC 4 cut(s) 485, 569, 572, 1089
FspBI CTAG 1 cut(s) 926
GlaI GCGC 3 cut(s) 467, 638, 1036
GluI GCNGC 4 cut(s) 485, 569, 572, 1089
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 2 cut(s) 469, 1038
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 95, 393
HgaI GACGC 2 cut(s) 112, 283
HhaI GCGC 3 cut(s) 468, 639, 1037
Hin6I GCGC 3 cut(s) 466, 637, 1035
HinP1I GCGC 3 cut(s) 466, 637, 1035
HindIII AAGCTT 2 cut(s) 540, 649
HinfI GANTC 6 cut(s) 144, 152, 523, 782, 802, 1043
HpaII CCGG 2 cut(s) 95, 393
HphI GGTGA 2 cut(s) 599, 1008
Hpy166II GTNNAC 5 cut(s) 14, 178, 273, 847, 858
Hpy188I TCNGA 6 cut(s) 128, 143, 408, 533, 790, 974
Hpy188III TCNNGA 5 cut(s) 82, 190, 220, 253, 818
Hpy8I GTNNAC 5 cut(s) 14, 178, 273, 847, 858
Hpy99I CGWCG 3 cut(s) 128, 152, 175
HpyAV CCTTC 2 cut(s) 196, 235
HpyCH4III ACNGT 2 cut(s) 831, 888
HpyF10VI GCNNNNNNNGC 3 cut(s) 274, 994, 1032
HpyF3I CTNAG 6 cut(s) 181, 480, 575, 753, 984, 1038
HspAI GCGC 3 cut(s) 466, 637, 1035
Kzo9I GATC 2 cut(s) 128, 866
LmnI GCTCC 3 cut(s) 19, 67, 365
Lsp1109I GCAGC 3 cut(s) 555, 558, 1100
LweI GCATC 6 cut(s) 166, 462, 676, 846, 949, 1075
MaeI CTAG 1 cut(s) 926
MaeIII GTNAC 4 cut(s) 388, 446, 475, 748
MalI GATC 2 cut(s) 130, 868
MbiI CCGCTC 1 cut(s) 484
MboI GATC 2 cut(s) 128, 866
MboII GAAGA 5 cut(s) 319, 341, 677, 1040, 1092
MhlI GDGCHC 1 cut(s) 829
MluCI AATT 4 cut(s) 262, 644, 793, 1059
MlyI GAGTC 4 cut(s) 138, 161, 517, 776
MmeI TCCRAC 2 cut(s) 106, 511
MnlI CCTC 4 cut(s) 335, 748, 864, 945
Mph1103I ATGCAT 1 cut(s) 684
MroXI GAANNNNTTC 2 cut(s) 669, 1099
MseI TTAA 4 cut(s) 87, 297, 647, 771
MslI CAYNNNNRTG 3 cut(s) 773, 953, 1004
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 2 cut(s) 95, 393
MspR9I CCNGG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 3 cut(s) 274, 994, 1032
NcoI CCATGG 1 cut(s) 442
NdeII GATC 2 cut(s) 128, 866
NlaIV GGNNCC 2 cut(s) 882, 933
NmuCI GTSAC 2 cut(s) 475, 748
NsiI ATGCAT 1 cut(s) 684
PagI TCATGA 1 cut(s) 81
PasI CCCWGGG 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 2 cut(s) 669, 1099
PfeI GAWTC 2 cut(s) 802, 1043
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 4 cut(s) 486, 570, 573, 1090
PleI GAGTC 4 cut(s) 138, 160, 517, 776
PpsI GAGTC 4 cut(s) 138, 160, 517, 776
PshAI GACNNNNGTC 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 882, 933
PspPI GGNCC 2 cut(s) 4, 222
PsrI GAACNNNNNNTAC 2 cut(s) 695, 727
PstI CTGCAG 1 cut(s) 1090
PstNI CAGNNNCTG 1 cut(s) 479
RsaI GTAC 4 cut(s) 13, 490, 549, 704
RsaNI GTAC 4 cut(s) 12, 489, 548, 703
RseI CAYNNNNRTG 3 cut(s) 773, 953, 1004
SaqAI TTAA 4 cut(s) 87, 297, 647, 771
SatI GCNGC 4 cut(s) 485, 569, 572, 1089
Sau3AI GATC 2 cut(s) 128, 866
Sau96I GGNCC 2 cut(s) 4, 222
SchI GAGTC 4 cut(s) 138, 161, 517, 776
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 1 cut(s) 829
SetI ASST 9 cut(s) 64, 227, 236, 415, 544, 553, 581, 653, 730
SfaNI GCATC 6 cut(s) 166, 462, 676, 846, 949, 1075
SfcI CTRYAG 1 cut(s) 1086
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 3 cut(s) 773, 953, 1004
SpeI ACTAGT 1 cut(s) 925
Sse9I AATT 4 cut(s) 262, 644, 793, 1059
SsiI CCGC 6 cut(s) 110, 210, 244, 290, 484, 1070
SspMI CTAG 1 cut(s) 926
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 2 cut(s) 831, 888
TaqI TCGA 3 cut(s) 147, 817, 869
TaqII GACCGA 2 cut(s) 150, 163
TasI AATT 4 cut(s) 262, 644, 793, 1059
TatI WGTACW 2 cut(s) 11, 702
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 2 cut(s) 802, 1043
Tru1I TTAA 4 cut(s) 87, 297, 647, 771
Tru9I TTAA 4 cut(s) 87, 297, 647, 771
TscAI CASTG 3 cut(s) 275, 480, 1131
TseFI GTSAC 2 cut(s) 475, 748
TseI GCWGC 3 cut(s) 568, 571, 1088
Tsp45I GTSAC 2 cut(s) 475, 748
TspDTI ATGAA 8 cut(s) 70, 327, 335, 341, 574, 643, 662, 1005
TspGWI ACGGA 2 cut(s) 48, 883
TspRI CASTG 3 cut(s) 275, 480, 1131
VpaK11BI GGWCC 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 2 cut(s) 669, 1099
XspI CTAG 1 cut(s) 926
Zsp2I ATGCAT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.