pycom17g20040

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014261
Physical Location & Seq
Forward (+)
18142672 .. 18143733
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGCCCATGGCCACCCCCCGCTCAGAACCACCACCACCACCCCAACCATGCACCCCATTACTCGCCGACCAAAACTACGTCGTTCTCTCACCACCATCTTGTTCTCACTCCCAACGACGGCGCACAACTATCCTAGCCACTACTCTCATACTTACACTCCTAGCCGCCACCTTCTCCGCCTTCGTTCTCTGGCCGTCCGACCCCTCCCTGAAGATCGTACGGCTTCGGCTTAACAAGGTTCAAGTCCACACGCGGCCACGAGTGACCATCGACGTGTCCATGTCGGTGACGATTAAGGTCCAGAACGTTGACGTTTACGCGATGGACTACGAGGCGCTGGAGGTGGCGGTTGGGTACAGAGGGAGGAGGCTGGGGCACGCGACGTTCCAGCAGGGTTACGTGCGGGCGCTTGGCTCGTCGTACTTGGACGCGGAGGTAGAGTTTAATGAGGTCGGGGTGTTTTCCGACGTGTTGCTCCTGCTTGAGGACTTGGCTAAGGGAACGGTGCCGTTTGACACCGTCACGGAGGTCCAAGGGCGGCTCGGCTTCTTGTTTTTTCAGTTCCCCTTGCAGGCAAGAGTTTCGTGTGAAATTATGGTGAATACACTAAATCAGACAATTTTTCGTCATAATTGCTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

215

Amino Acids

23.97

Weight (kDa)

6.9

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 97 - 194 3.5e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 505
AccBSI CCGCTC 1 cut(s) 21
AccII CGCG 4 cut(s) 253, 320, 380, 431
AciI CCGC 8 cut(s) 19, 165, 177, 253, 347, 403, 431, 538
AclI AACGTT 1 cut(s) 306
AcoI YGGCCR 3 cut(s) 9, 191, 254
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 3 cut(s) 219, 356, 422
AfiI CCNNNNNNNGG 3 cut(s) 117, 484, 571
AflIII ACRYGT 2 cut(s) 273, 468
AgsI TTSAA 1 cut(s) 242
AjiI CACGTC 2 cut(s) 274, 469
AoxI GGCC 3 cut(s) 9, 191, 254
AspLEI GCGC 3 cut(s) 123, 337, 409
AspS9I GGNCC 2 cut(s) 298, 529
AsuHPI GGTGA 3 cut(s) 81, 298, 610
AvaII GGWCC 2 cut(s) 298, 529
BaeGI GKGCMC 1 cut(s) 378
BalI TGGCCA 1 cut(s) 11
BanI GGYRCC 1 cut(s) 505
BauI CACGAG 1 cut(s) 258
BccI CCATC 3 cut(s) 103, 275, 316
BceAI ACGGC 4 cut(s) 134, 178, 236, 493
BcgI CGANNNNNNTGC 2 cut(s) 564, 598
BfaI CTAG 2 cut(s) 134, 161
BfoI RGCGCY 2 cut(s) 338, 410
BisI GCNGC 3 cut(s) 165, 254, 539
BlsI GCNGC 3 cut(s) 166, 255, 540
Bme18I GGWCC 2 cut(s) 298, 529
BmgBI CACGTC 2 cut(s) 274, 469
BmgT120I GGNCC 2 cut(s) 298, 529
BmiI GGNNCC 1 cut(s) 507
BpmI CTGGAG 1 cut(s) 359
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 6, 532
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 425, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 484, 571
BseDI CCNNGG 2 cut(s) 6, 532
BseLI CCNNNNNNNGG 3 cut(s) 117, 484, 571
BseMII CTCAG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 379
BseSI GKGCMC 1 cut(s) 378
BseYI CCCAGC 1 cut(s) 370
Bsh1236I CGCG 4 cut(s) 253, 320, 380, 431
BshFI GGCC 3 cut(s) 11, 193, 256
BshNI GGYRCC 1 cut(s) 505
BsiWI CGTACG 1 cut(s) 217
BslI CCNNNNNNNGG 3 cut(s) 117, 484, 571
BsnI GGCC 3 cut(s) 11, 193, 256
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 8 cut(s) 19, 165, 177, 253, 347, 403, 431, 538
BspANI GGCC 3 cut(s) 11, 193, 256
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 4 cut(s) 253, 320, 380, 431
BspLI GGNNCC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 505
BsrBI CCGCTC 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 6, 532
BssMI GATC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 6, 532
Bst2BI CACGAG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 505, 520
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 378, 405, 573
BstDEI CTNAG 2 cut(s) 22, 495
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 482
BstFNI CGCG 4 cut(s) 253, 320, 380, 431
BstH2I RGCGCY 2 cut(s) 338, 410
BstHHI GCGC 3 cut(s) 123, 337, 409
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 378
BstUI CGCG 4 cut(s) 253, 320, 380, 431
BsuRI GGCC 3 cut(s) 11, 193, 256
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 335
BtrI CACGTC 2 cut(s) 274, 469
Cac8I GCNNGC 3 cut(s) 378, 405, 573
CfoI GCGC 3 cut(s) 123, 337, 409
Cfr13I GGNCC 2 cut(s) 298, 529
CseI GACGC 1 cut(s) 437
Csp6I GTAC 3 cut(s) 218, 355, 421
CviAII CATG 3 cut(s) 7, 48, 280
CviQI GTAC 3 cut(s) 218, 355, 421
DdeI CTNAG 2 cut(s) 22, 495
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 3 cut(s) 9, 191, 254
EciI GGCGGA 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 6, 532
Eco47I GGWCC 2 cut(s) 298, 529
Eco57I CTGAAG 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoT14I CCWWGG 2 cut(s) 6, 532
ErhI CCWWGG 2 cut(s) 6, 532
FaeI CATG 3 cut(s) 10, 51, 283
FaiI YATR 7 cut(s) 8, 49, 149, 281, 596, 630, 639
FatI CATG 3 cut(s) 6, 47, 279
FauI CCCGC 2 cut(s) 26, 396
Fnu4HI GCNGC 3 cut(s) 165, 254, 539
Fsp4HI GCNGC 3 cut(s) 165, 254, 539
FspBI CTAG 2 cut(s) 134, 161
GlaI GCGC 3 cut(s) 122, 336, 408
GluI GCNGC 3 cut(s) 165, 254, 539
GsaI CCCAGC 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 2 cut(s) 338, 410
HaeIII GGCC 3 cut(s) 11, 193, 256
HgaI GACGC 1 cut(s) 437
HhaI GCGC 3 cut(s) 123, 337, 409
Hin1II CATG 3 cut(s) 10, 51, 283
Hin6I GCGC 3 cut(s) 121, 335, 407
HinP1I GCGC 3 cut(s) 121, 335, 407
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HphI GGTGA 3 cut(s) 81, 298, 610
Hpy166II GTNNAC 3 cut(s) 247, 310, 316
Hpy188I TCNGA 4 cut(s) 25, 199, 466, 615
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 3 cut(s) 247, 310, 316
Hpy99I CGWCG 6 cut(s) 83, 120, 275, 385, 421, 470
HpyAV CCTTC 2 cut(s) 181, 190
HpyCH4III ACNGT 2 cut(s) 505, 520
HpyCH4IV ACGT 7 cut(s) 78, 273, 306, 312, 383, 399, 468
HpyCH4V TGCA 2 cut(s) 51, 571
HpyF3I CTNAG 2 cut(s) 22, 495
HpySE526I ACGT 7 cut(s) 78, 273, 306, 312, 383, 399, 468
Hsp92II CATG 3 cut(s) 10, 51, 283
HspAI GCGC 3 cut(s) 121, 335, 407
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 480
LpnPI CCDG 9 cut(s) 175, 221, 314, 323, 356, 377, 401, 491, 557
MaeI CTAG 2 cut(s) 134, 161
MaeII ACGT 7 cut(s) 78, 273, 306, 312, 383, 399, 468
MaeIII GTNAC 4 cut(s) 262, 286, 395, 520
MalI GATC 1 cut(s) 215
MbiI CCGCTC 1 cut(s) 21
MboI GATC 1 cut(s) 213
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 378
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 3 cut(s) 591, 618, 631
MluNI TGGCCA 1 cut(s) 11
MmeI TCCRAC 2 cut(s) 222, 489
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
MseI TTAA 3 cut(s) 231, 294, 444
MslI CAYNNNNRTG 2 cut(s) 272, 284
Msp20I TGGCCA 1 cut(s) 11
MvnI CGCG 4 cut(s) 253, 320, 380, 431
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 213
NlaIII CATG 3 cut(s) 10, 51, 283
NlaIV GGNNCC 1 cut(s) 507
NmeAIII GCCGAG 1 cut(s) 522
NmuCI GTSAC 3 cut(s) 262, 286, 520
Pfl23II CGTACG 1 cut(s) 217
PflFI GACNNNGTC 1 cut(s) 518
PkrI GCNGC 3 cut(s) 166, 255, 540
Ppu21I YACGTR 1 cut(s) 400
Psp1406I AACGTT 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 370
PspLI CGTACG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 2 cut(s) 298, 529
PsyI GACNNNGTC 1 cut(s) 518
RsaI GTAC 3 cut(s) 219, 356, 422
RsaNI GTAC 3 cut(s) 218, 355, 421
RseI CAYNNNNRTG 2 cut(s) 272, 284
SaqAI TTAA 3 cut(s) 231, 294, 444
SatI GCNGC 3 cut(s) 165, 254, 539
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 298, 529
SduI GDGCHC 1 cut(s) 378
SinI GGWCC 2 cut(s) 298, 529
SmiMI CAYNNNNRTG 2 cut(s) 272, 284
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 591, 618, 631
SsiI CCGC 8 cut(s) 19, 165, 177, 253, 347, 403, 431, 538
SspMI CTAG 2 cut(s) 134, 161
StyI CCWWGG 2 cut(s) 6, 532
TaaI ACNGT 2 cut(s) 505, 520
TaiI ACGT 7 cut(s) 81, 276, 309, 315, 386, 402, 471
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 591, 618, 631
TauI GCSGC 3 cut(s) 167, 256, 541
Tru1I TTAA 3 cut(s) 231, 294, 444
Tru9I TTAA 3 cut(s) 231, 294, 444
TseFI GTSAC 3 cut(s) 262, 286, 520
Tsp45I GTSAC 3 cut(s) 262, 286, 520
TspGWI ACGGA 1 cut(s) 539
Tth111I GACNNNGTC 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 298, 529
XagI CCTNNNNNAGG 1 cut(s) 482
XspI CTAG 2 cut(s) 134, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.