pycom17g22910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0005920
Physical Location & Seq
Reverse (-)
21318443 .. 21318885
443 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGAAGGGAATGAAATTACAAACATGCTTTTTATTCAGCTTATGCACTCATGCCCTTTCAAGCTCGGCTCTCCGGAGCTTCTTCGAGTTAGAATTTGAAGATGTACAAGGACGGGAAATTCGTGTGAGGCATGCTGGTGTTGGTAGCTCAATCGAGCCATATTGCGAAAAACATGAAACGGATGATTCAAGGAAGATCCAAAGAGGGAAAGGGGTTGGTTCAAATATTGCTCATCAGTGCCCAAAAAGTAGTGCAACACCGATGATTGGAAGGTCCCAGCAGCCCTTCTTCCTGTTGACCAAAACCATGTTGCAAGTAACCTTTGCTTTGATTTTCATTCTTCCCCTTCAATTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

9.07

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 72
AclWI GGATC 1 cut(s) 190
AcsI RAATTY 2 cut(s) 92, 117
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 5 cut(s) 60, 98, 189, 222, 350
AluBI AGCT 4 cut(s) 39, 63, 78, 147
AluI AGCT 4 cut(s) 39, 63, 78, 147
AlwI GGATC 1 cut(s) 190
Aor13HI TCCGGA 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 2 cut(s) 92, 117
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AspS9I GGNCC 1 cut(s) 273
AvaII GGWCC 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 292
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 72
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 242
Bsp13I TCCGGA 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 1 cut(s) 195
BspEI TCCGGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 103
BssMI GATC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstNSI RCATGY 2 cut(s) 27, 134
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 104
CviAII CATG 5 cut(s) 24, 50, 131, 173, 307
CviJI RGCY 7 cut(s) 39, 63, 68, 78, 147, 157, 283
CviKI_1 RGCY 7 cut(s) 39, 63, 68, 78, 147, 157, 283
CviQI GTAC 1 cut(s) 104
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 273
FaeI CATG 5 cut(s) 27, 53, 134, 176, 310
FaiI YATR 7 cut(s) 25, 43, 51, 132, 160, 174, 308
FaqI GGGAC 1 cut(s) 259
FatI CATG 5 cut(s) 23, 49, 130, 172, 306
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 281
GsaI CCCAGC 1 cut(s) 280
HapII CCGG 1 cut(s) 73
Hin1II CATG 5 cut(s) 27, 53, 134, 176, 310
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 297
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 3 cut(s) 264, 295, 356
HpyCH4V TGCA 3 cut(s) 45, 254, 313
Hsp92II CATG 5 cut(s) 27, 53, 134, 176, 310
Kpn2I TCCGGA 1 cut(s) 72
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 4 cut(s) 86, 120, 290, 305
Lsp1109I GCAGC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 5 cut(s) 73, 110, 205, 280, 332
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 4 cut(s) 14, 92, 117, 350
MnlI CCTC 2 cut(s) 120, 197
MroI TCCGGA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 73
NdeII GATC 1 cut(s) 195
NlaIII CATG 5 cut(s) 27, 53, 134, 176, 310
NlaIV GGNNCC 1 cut(s) 275
NmeAIII GCCGAG 1 cut(s) 44
NspI RCATGY 2 cut(s) 27, 134
PaeI GCATGC 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 273
PspPPI RGGWCCY 1 cut(s) 273
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 135
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 273
SduI GDGCHC 1 cut(s) 242
SetI ASST 6 cut(s) 41, 65, 80, 149, 275, 323
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 135
SphI GCATGC 1 cut(s) 134
Sse9I AATT 4 cut(s) 14, 92, 117, 350
SspI AATATT 1 cut(s) 226
TaqI TCGA 2 cut(s) 84, 153
TasI AATT 4 cut(s) 14, 92, 117, 350
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 1 cut(s) 242
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 4 cut(s) 17, 26, 189, 325
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 2 cut(s) 92, 117
XceI RCATGY 2 cut(s) 27, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.