Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005920

Physical Location & Seq

Genomic Coordinates Reverse (-)

21326762 .. 21327428

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGGGGTTTCGGAATGTGCCTGCCCATCAAATATATGGGTTCTATCTCCCTGGCCCCTCCAACCAAGTTACAAAAAATGAAGGGAATGAAATTACACACATGCTTTTTATTCATCTTATGCACTCATGCCCTTCAAGCTCGGCTCTCCGGAGCTTCTTCGAGTTAGAACATGAAGATGTACGAGGACGGGAAATTCATGTAGTGAGGCATGCTGGTGTTGGTGGCGCAGTCGAGCCGTATGGAGAAAAACATGAAACGGACGATTCAAGGAAGGCCCGAAGAGGGAAAGGGGGAGTTGGTTCAAATATTGCTCATCAGCGCCTAAAAAGTAGTGCAAAACCGATGATTAGAAGGTCCCAGCAGCCCTTCCTCTTGACCAAAACCATGTTGCAAGTAACCTTTGCTTTGATTTTCATTCTTCCCTTTCAATTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

9.83

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005920)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28390 FvH4_6g28400 FvH4_6g28400
malus_domestica	MD09G1226700.v1.1
prunus_persica	Prupe.3G102000_v2.0.a1 Prupe.3G102000_v2.0.a1 Prupe.3G102000_v2.0.a1 Prupe.3G102000_v2.0.a1 Prupe.3G102000_v2.0.a1 Prupe.3G102000_v2.0.a1
pyrus_communis	pycom09g14570 pycom17g22910 pycom17g22920
rosa_chinensis	RchiOBHm_Chr2g0132501 RchiOBHm_Chr2g0132511
rosa_laevigata	RLG00000019261 RLG00000019263
rosa_roxburghii	Rroxscaffold_2G00111860 Rroxscaffold_2G00111870
rosa_rugosa	Rorug02G0304900 Rorug02G0304900 Rorug02G0305100
rosa_samantha	Rh2AG357700 Rh2AG357900 Rh2BG364300 Rh2CG341400 Rh2DG381000
rosa_wichuraiana	Rw2G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	138, 270, 306, 431
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	141, 156
AluI	AGCT	2 cut(s)	141, 156
Aor13HI	TCCGGA	1 cut(s)	150
AoxI	GGCC	2 cut(s)	55, 276
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	230, 324
AspS9I	GGNCC	3 cut(s)	56, 277, 357
AvaII	GGWCC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	325
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	56, 277, 357
BmiI	GGNNCC	2 cut(s)	58, 359
BmrFI	CCNGG	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	360
BshFI	GGCC	2 cut(s)	57, 278
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	57, 278
Bsp13I	TCCGGA	1 cut(s)	150
BspANI	GGCC	2 cut(s)	57, 278
BspEI	TCCGGA	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	58, 359
BssECI	CCNNGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	24, 213
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	2 cut(s)	230, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	2 cut(s)	106, 215
BstSCI	CCNGG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	57, 278
Cac8I	GCNNGC	2 cut(s)	24, 213
CfoI	GCGC	2 cut(s)	230, 324
Cfr13I	GGNCC	3 cut(s)	56, 277, 357
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	7 cut(s)	103, 129, 173, 200, 212, 254, 388
CviJI	RGCY	7 cut(s)	57, 141, 146, 156, 238, 278, 367
CviKI_1	RGCY	7 cut(s)	57, 141, 146, 156, 238, 278, 367
CviQI	GTAC	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	52
FaeI	CATG	7 cut(s)	106, 132, 176, 203, 215, 257, 391
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	7 cut(s)	102, 128, 172, 199, 211, 253, 387
Fnu4HI	GCNGC	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	365
GlaI	GCGC	2 cut(s)	229, 323
GluI	GCNGC	1 cut(s)	365
GsaI	CCCAGC	1 cut(s)	364
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	57, 278
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	2 cut(s)	230, 324
Hin1II	CATG	7 cut(s)	106, 132, 176, 203, 215, 257, 391
Hin6I	GCGC	2 cut(s)	228, 322
HinP1I	GCGC	2 cut(s)	228, 322
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	151, 376
HpyAV	CCTTC	5 cut(s)	77, 144, 268, 348, 379
HpyCH4V	TGCA	3 cut(s)	124, 338, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
Hsp92II	CATG	7 cut(s)	106, 132, 176, 203, 215, 257, 391
HspAI	GCGC	2 cut(s)	228, 322
Kpn2I	TCCGGA	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	6 cut(s)	36, 39, 66, 164, 201, 374
Lsp1109I	GCAGC	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	70, 397
MboII	GAAGA	4 cut(s)	151, 188, 294, 413
MluCI	AATT	3 cut(s)	93, 195, 431
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	70, 179, 201, 278, 383
MroI	TCCGGA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	177, 216
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	138
NlaIII	CATG	7 cut(s)	106, 132, 176, 203, 215, 257, 391
NlaIV	GGNNCC	2 cut(s)	58, 359
NmeAIII	GCCGAG	1 cut(s)	122
NspI	RCATGY	2 cut(s)	106, 215
PaeI	GCATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	366
PpuMI	RGGWCCY	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	58, 359
PspPI	GGNCC	3 cut(s)	56, 277, 357
PspPPI	RGGWCCY	1 cut(s)	357
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	2 cut(s)	177, 216
SatI	GCNGC	1 cut(s)	365
Sau96I	GGNCC	3 cut(s)	56, 277, 357
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	4 cut(s)	143, 158, 359, 404
SinI	GGWCC	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	177, 216
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	3 cut(s)	93, 195, 431
SspI	AATATT	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	52
TaqI	TCGA	2 cut(s)	162, 234
TasI	AATT	3 cut(s)	93, 195, 431
TfiI	GAWTC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	364
TspDTI	ATGAA	7 cut(s)	96, 104, 105, 188, 189, 270, 406
TspGWI	ACGGA	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	2 cut(s)	106, 215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.