Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0015726

Physical Location & Seq

Genomic Coordinates Reverse (-)

21633647 .. 21634354

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGACTTACATTTCCGTAACTGTTGCAGTATTGGTTTTCTGTCTTTTGTGTCAAATCCAAGGGAAAGTTGCCTTTGGTGGAGTTGATAATATTAATGCAACGAAAAATGTTGTAGGGATTGGACGCTGTGACCTTTTCCAGGGGAAATGGGTTTATGATAGGTCTTATCCTCTCTACACTTCAACTGACTGTCCATTCATAGAGAAGGAGTTTAATTGCCAAAACCATGGACGACCGGACAAGGAGTATCAGAAATACAGATGGCAGCCAACTTCGTGCCAGATACCGAGGATCACTGGAAGAAGTTTTCTTCAAAGATTGAGAGGGAAGCGCATCCTGTTTGTAGGAGACTCACTGAGCTTGAATCAATGGCAGTCTCTCACATGCATGATTCACAAATCAGCACCAGAAGCTAAGTACGACCTAGTCAAGATTGGAGGCCTATCTGTACTCAAATTTCCAGTAAGACTTAGCTATCGAGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

164

Amino Acids

18.7

Weight (kDa)

9.32

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	43 - 95	3e-25	PMR5 N terminal Domain
PC-Esterase	PF13839	96 - 154	1.4e-16	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015726)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g23210
rosa_chinensis	RchiOBHm_Chr4g0400051 RchiOBHm_Chr5g0025161 RchiOBHm_Chr7g0208551
rosa_multiflora	Rmu_sc0001942.1_g000090
rosa_roxburghii	Rroxscaffold_1G00036260
rosa_samantha	Rh3DG083800 Rh5AG207500 Rh5AG207600 Rh5BG189300 Rh5CG194300 Rh5DG317800 Rh7AG239400 Rh7DG245400 Rh7DG427600
rosa_wichuraiana	Rw1G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	2 cut(s)	422, 453
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	186, 317, 367
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	3 cut(s)	363, 416, 477
AluI	AGCT	3 cut(s)	363, 416, 477
Alw26I	GTCTC	2 cut(s)	345, 384
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	458
AseI	ATTAAT	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	345, 384
BfaI	CTAG	1 cut(s)	428
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	345
BsaJI	CCNNGG	4 cut(s)	61, 142, 229, 290
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	304, 464
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	4 cut(s)	61, 142, 229, 290
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	2 cut(s)	304, 464
BseXI	GCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	444
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	345, 384
BsnI	GGCC	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	229
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	351
BspPI	GGATC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	304, 464
BssECI	CCNNGG	4 cut(s)	61, 142, 229, 290
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	61, 229
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	25, 194
BstDEI	CTNAG	3 cut(s)	359, 417, 473
BstDSI	CCRYGG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	2 cut(s)	345, 384
BstMBI	GATC	1 cut(s)	294
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	297, 356
CfoI	GCGC	1 cut(s)	336
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	421, 452
CviAII	CATG	3 cut(s)	230, 387, 391
CviJI	RGCY	5 cut(s)	271, 363, 416, 444, 477
CviKI_1	RGCY	5 cut(s)	271, 363, 416, 444, 477
CviQI	GTAC	2 cut(s)	421, 452
DdeI	CTNAG	3 cut(s)	359, 417, 473
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	61, 229
Eco147I	AGGCCT	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	61, 229
EcoT22I	ATGCAT	1 cut(s)	392
ErhI	CCWWGG	2 cut(s)	61, 229
FaeI	CATG	3 cut(s)	233, 390, 394
FaiI	YATR	7 cut(s)	159, 203, 231, 388, 392, 488, 490
FatI	CATG	3 cut(s)	229, 386, 390
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	135
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	233, 390, 394
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	353, 367, 394
HpaII	CCGG	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	2 cut(s)	433, 482
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	25, 194
HpyCH4V	TGCA	3 cut(s)	29, 101, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	3 cut(s)	359, 417, 473
Hsp92II	CATG	3 cut(s)	233, 390, 394
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	294
LpnPI	CCDG	8 cut(s)	128, 155, 252, 285, 296, 353, 423, 477
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	19, 131
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	2 cut(s)	305, 315
MluCI	AATT	2 cut(s)	217, 458
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	4 cut(s)	183, 285, 320, 434
Mph1103I	ATGCAT	1 cut(s)	392
MseI	TTAA	2 cut(s)	96, 216
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	3 cut(s)	233, 390, 394
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	392
NspI	RCATGY	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	367, 394
PflFI	GACNNNGTC	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PshBI	ATTAAT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	2 cut(s)	422, 453
RsaNI	GTAC	2 cut(s)	421, 452
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	96, 216
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	6 cut(s)	138, 167, 365, 418, 429, 479
SfaNI	GCATC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	217, 458
SseBI	AGGCCT	1 cut(s)	444
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	428
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	61, 229
TaaI	ACNGT	2 cut(s)	25, 194
TaqI	TCGA	1 cut(s)	481
TasI	AATT	2 cut(s)	217, 458
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	367, 394
Tru1I	TTAA	2 cut(s)	96, 216
Tru9I	TTAA	2 cut(s)	96, 216
TscAI	CASTG	2 cut(s)	304, 363
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	304, 363
Tth111I	GACNNNGTC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	1 cut(s)	390
XspI	CTAG	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.