Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom17g23210 |
| rosa_chinensis | RchiOBHm_Chr4g0400051 RchiOBHm_Chr5g0025161 RchiOBHm_Chr7g0208551 |
| rosa_multiflora | Rmu_sc0001942.1_g000090 |
| rosa_roxburghii | Rroxscaffold_1G00036260 |
| rosa_samantha | Rh3DG083800 Rh5AG207500 Rh5AG207600 Rh5BG189300 Rh5CG194300 Rh5DG317800 Rh7AG239400 Rh7DG245400 Rh7DG427600 |
| rosa_wichuraiana | Rw1G028010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 122 |
| AcsI | RAATTY | 1 cut(s) | 184 |
| AfaI | GTAC | 2 cut(s) | 46, 120 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 122 |
| AgsI | TTSAA | 4 cut(s) | 58, 161, 211, 241 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 203, 235 |
| AluBI | AGCT | 2 cut(s) | 250, 271 |
| AluI | AGCT | 2 cut(s) | 250, 271 |
| ApeKI | GCWGC | 1 cut(s) | 250 |
| ApoI | RAATTY | 1 cut(s) | 184 |
| AsuHPI | GGTGA | 1 cut(s) | 287 |
| BbvI | GCAGC | 1 cut(s) | 237 |
| BclI | TGATCA | 1 cut(s) | 177 |
| BfaI | CTAG | 1 cut(s) | 36 |
| BfmI | CTRYAG | 1 cut(s) | 251 |
| BisI | GCNGC | 1 cut(s) | 251 |
| BlpI | GCTNAGC | 1 cut(s) | 294 |
| BlsI | GCNGC | 1 cut(s) | 252 |
| BmcAI | AGTACT | 1 cut(s) | 120 |
| BmrI | ACTGGG | 1 cut(s) | 73 |
| BmuI | ACTGGG | 1 cut(s) | 73 |
| BpmI | CTGGAG | 1 cut(s) | 266 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 294 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 239, 269 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 122 |
| Bse1I | ACTGG | 2 cut(s) | 79, 116 |
| BseGI | GGATG | 1 cut(s) | 229 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 122 |
| BseNI | ACTGG | 2 cut(s) | 79, 116 |
| BseXI | GCAGC | 1 cut(s) | 237 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 122 |
| Bsp143I | GATC | 1 cut(s) | 177 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 294 |
| BspHI | TCATGA | 1 cut(s) | 180 |
| BspMAI | CTGCAG | 1 cut(s) | 255 |
| BsrI | ACTGG | 2 cut(s) | 79, 116 |
| BssMI | GATC | 1 cut(s) | 177 |
| BstC8I | GCNNGC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 2 cut(s) | 195, 294 |
| BstF5I | GGATG | 1 cut(s) | 229 |
| BstKTI | GATC | 1 cut(s) | 180 |
| BstMBI | GATC | 1 cut(s) | 177 |
| BstSFI | CTRYAG | 1 cut(s) | 251 |
| BstV1I | GCAGC | 1 cut(s) | 237 |
| BtsCI | GGATG | 1 cut(s) | 229 |
| BtsIMutI | CAGTG | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 1 cut(s) | 192 |
| CciI | TCATGA | 1 cut(s) | 180 |
| Csp6I | GTAC | 2 cut(s) | 45, 119 |
| CviAII | CATG | 2 cut(s) | 181, 233 |
| CviJI | RGCY | 3 cut(s) | 194, 250, 271 |
| CviKI_1 | RGCY | 3 cut(s) | 194, 250, 271 |
| CviQI | GTAC | 2 cut(s) | 45, 119 |
| DdeI | CTNAG | 2 cut(s) | 195, 294 |
| DpnI | GATC | 1 cut(s) | 179 |
| DpnII | GATC | 1 cut(s) | 177 |
| FaeI | CATG | 2 cut(s) | 184, 236 |
| FaiI | YATR | 5 cut(s) | 15, 17, 30, 182, 234 |
| FatI | CATG | 2 cut(s) | 180, 232 |
| FbaI | TGATCA | 1 cut(s) | 177 |
| Fnu4HI | GCNGC | 1 cut(s) | 251 |
| FokI | GGATG | 1 cut(s) | 236 |
| Fsp4HI | GCNGC | 1 cut(s) | 251 |
| FspBI | CTAG | 1 cut(s) | 36 |
| GluI | GCNGC | 1 cut(s) | 251 |
| GsuI | CTGGAG | 1 cut(s) | 266 |
| Hin1II | CATG | 2 cut(s) | 184, 236 |
| HindIII | AAGCTT | 1 cut(s) | 269 |
| HinfI | GANTC | 3 cut(s) | 49, 241, 280 |
| HphI | GGTGA | 1 cut(s) | 287 |
| Hpy166II | GTNNAC | 1 cut(s) | 45 |
| Hpy188III | TCNNGA | 2 cut(s) | 181, 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 45 |
| HpyAV | CCTTC | 1 cut(s) | 205 |
| HpyCH4V | TGCA | 3 cut(s) | 148, 190, 253 |
| HpyF3I | CTNAG | 2 cut(s) | 195, 294 |
| Hsp92II | CATG | 2 cut(s) | 184, 236 |
| Ksp22I | TGATCA | 1 cut(s) | 177 |
| Kzo9I | GATC | 1 cut(s) | 177 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| LpnPI | CCDG | 5 cut(s) | 92, 129, 134, 176, 230 |
| Lsp1109I | GCAGC | 1 cut(s) | 237 |
| MaeI | CTAG | 1 cut(s) | 36 |
| MaeIII | GTNAC | 1 cut(s) | 255 |
| MalI | GATC | 1 cut(s) | 179 |
| MboI | GATC | 1 cut(s) | 177 |
| MluCI | AATT | 5 cut(s) | 87, 111, 143, 184, 218 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 1 cut(s) | 220 |
| MseI | TTAA | 1 cut(s) | 110 |
| NdeII | GATC | 1 cut(s) | 177 |
| NlaIII | CATG | 2 cut(s) | 184, 236 |
| NmuCI | GTSAC | 1 cut(s) | 255 |
| PagI | TCATGA | 1 cut(s) | 180 |
| PfeI | GAWTC | 2 cut(s) | 241, 280 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 122 |
| PkrI | GCNGC | 1 cut(s) | 252 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| PstI | CTGCAG | 1 cut(s) | 255 |
| RsaI | GTAC | 2 cut(s) | 46, 120 |
| RsaNI | GTAC | 2 cut(s) | 45, 119 |
| SaqAI | TTAA | 1 cut(s) | 110 |
| SatI | GCNGC | 1 cut(s) | 251 |
| Sau3AI | GATC | 1 cut(s) | 177 |
| ScaI | AGTACT | 1 cut(s) | 120 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SetI | ASST | 2 cut(s) | 252, 273 |
| SfcI | CTRYAG | 1 cut(s) | 251 |
| Sse9I | AATT | 5 cut(s) | 87, 111, 143, 184, 218 |
| SspMI | CTAG | 1 cut(s) | 36 |
| TasI | AATT | 5 cut(s) | 87, 111, 143, 184, 218 |
| TatI | WGTACW | 1 cut(s) | 118 |
| TfiI | GAWTC | 2 cut(s) | 241, 280 |
| Tru1I | TTAA | 1 cut(s) | 110 |
| Tru9I | TTAA | 1 cut(s) | 110 |
| TscAI | CASTG | 1 cut(s) | 145 |
| TseFI | GTSAC | 1 cut(s) | 255 |
| TseI | GCWGC | 1 cut(s) | 250 |
| Tsp45I | GTSAC | 1 cut(s) | 255 |
| TspDTI | ATGAA | 2 cut(s) | 32, 197 |
| TspRI | CASTG | 1 cut(s) | 145 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 122 |
| XapI | RAATTY | 1 cut(s) | 184 |
| XspI | CTAG | 1 cut(s) | 36 |
| ZrmI | AGTACT | 1 cut(s) | 120 |