Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom17g23210 |
| rosa_chinensis | RchiOBHm_Chr4g0400051 RchiOBHm_Chr5g0025161 RchiOBHm_Chr7g0208551 |
| rosa_multiflora | Rmu_sc0001942.1_g000090 |
| rosa_roxburghii | Rroxscaffold_1G00036260 |
| rosa_samantha | Rh3DG083800 Rh5AG207500 Rh5AG207600 Rh5BG189300 Rh5CG194300 Rh5DG317800 Rh7AG239400 Rh7DG245400 Rh7DG427600 |
| rosa_wichuraiana | Rw1G028010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 37, 103, 234 |
| AcuI | CTGAAG | 1 cut(s) | 196 |
| AgsI | TTSAA | 3 cut(s) | 80, 130, 160 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 122, 154 |
| AluBI | AGCT | 2 cut(s) | 169, 190 |
| AluI | AGCT | 2 cut(s) | 169, 190 |
| Alw21I | GWGCWC | 1 cut(s) | 199 |
| ApeKI | GCWGC | 1 cut(s) | 169 |
| ApoI | RAATTY | 3 cut(s) | 37, 103, 234 |
| BbsI | GAAGAC | 1 cut(s) | 202 |
| Bbv12I | GWGCWC | 1 cut(s) | 199 |
| BbvI | GCAGC | 1 cut(s) | 156 |
| BclI | TGATCA | 1 cut(s) | 96 |
| BfmI | CTRYAG | 1 cut(s) | 170 |
| BisI | GCNGC | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 171 |
| BpiI | GAAGAC | 1 cut(s) | 202 |
| BpmI | CTGGAG | 1 cut(s) | 185 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 158, 188 |
| Bse3DI | GCAATG | 1 cut(s) | 220 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseMI | GCAATG | 1 cut(s) | 220 |
| BseXI | GCAGC | 1 cut(s) | 156 |
| BsiHKAI | GWGCWC | 1 cut(s) | 199 |
| Bsp1286I | GDGCHC | 1 cut(s) | 199 |
| Bsp143I | GATC | 1 cut(s) | 96 |
| BspHI | TCATGA | 1 cut(s) | 99 |
| BspMAI | CTGCAG | 1 cut(s) | 174 |
| BsrDI | GCAATG | 1 cut(s) | 220 |
| BssMI | GATC | 1 cut(s) | 96 |
| BstC8I | GCNNGC | 2 cut(s) | 49, 111 |
| BstDEI | CTNAG | 1 cut(s) | 114 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstKTI | GATC | 1 cut(s) | 99 |
| BstMBI | GATC | 1 cut(s) | 96 |
| BstSFI | CTRYAG | 1 cut(s) | 170 |
| BstV1I | GCAGC | 1 cut(s) | 156 |
| BstV2I | GAAGAC | 1 cut(s) | 202 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| Cac8I | GCNNGC | 2 cut(s) | 49, 111 |
| CciI | TCATGA | 1 cut(s) | 99 |
| CviAII | CATG | 3 cut(s) | 34, 100, 152 |
| CviJI | RGCY | 3 cut(s) | 113, 169, 190 |
| CviKI_1 | RGCY | 3 cut(s) | 113, 169, 190 |
| DdeI | CTNAG | 1 cut(s) | 114 |
| DpnI | GATC | 1 cut(s) | 98 |
| DpnII | GATC | 1 cut(s) | 96 |
| Eco57I | CTGAAG | 1 cut(s) | 196 |
| EcoRI | GAATTC | 1 cut(s) | 37 |
| FaeI | CATG | 3 cut(s) | 37, 103, 155 |
| FaiI | YATR | 6 cut(s) | 6, 35, 45, 53, 101, 153 |
| FatI | CATG | 3 cut(s) | 33, 99, 151 |
| FbaI | TGATCA | 1 cut(s) | 96 |
| Fnu4HI | GCNGC | 1 cut(s) | 170 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 1 cut(s) | 170 |
| GluI | GCNGC | 1 cut(s) | 170 |
| GsuI | CTGGAG | 1 cut(s) | 185 |
| Hin1II | CATG | 3 cut(s) | 37, 103, 155 |
| HindIII | AAGCTT | 1 cut(s) | 188 |
| HinfI | GANTC | 1 cut(s) | 160 |
| Hpy188I | TCNGA | 1 cut(s) | 215 |
| Hpy188III | TCNNGA | 3 cut(s) | 100, 164, 228 |
| HpyAV | CCTTC | 3 cut(s) | 28, 52, 124 |
| HpyCH4V | TGCA | 4 cut(s) | 33, 67, 109, 172 |
| HpyF3I | CTNAG | 1 cut(s) | 114 |
| Hsp92II | CATG | 3 cut(s) | 37, 103, 155 |
| Ksp22I | TGATCA | 1 cut(s) | 96 |
| Kzo9I | GATC | 1 cut(s) | 96 |
| LmnI | GCTCC | 2 cut(s) | 166, 194 |
| LpnPI | CCDG | 5 cut(s) | 33, 53, 95, 149, 213 |
| Lsp1109I | GCAGC | 1 cut(s) | 156 |
| MaeIII | GTNAC | 1 cut(s) | 174 |
| MalI | GATC | 1 cut(s) | 98 |
| MboI | GATC | 1 cut(s) | 96 |
| MboII | GAAGA | 1 cut(s) | 202 |
| MhlI | GDGCHC | 1 cut(s) | 199 |
| MluCI | AATT | 5 cut(s) | 37, 62, 103, 137, 234 |
| MnlI | CCTC | 1 cut(s) | 139 |
| NdeII | GATC | 1 cut(s) | 96 |
| NlaIII | CATG | 3 cut(s) | 37, 103, 155 |
| NmuCI | GTSAC | 1 cut(s) | 174 |
| PagI | TCATGA | 1 cut(s) | 99 |
| PfeI | GAWTC | 1 cut(s) | 160 |
| PkrI | GCNGC | 1 cut(s) | 171 |
| PstI | CTGCAG | 1 cut(s) | 174 |
| SatI | GCNGC | 1 cut(s) | 170 |
| Sau3AI | GATC | 1 cut(s) | 96 |
| SduI | GDGCHC | 1 cut(s) | 199 |
| SetI | ASST | 3 cut(s) | 20, 171, 192 |
| SfcI | CTRYAG | 1 cut(s) | 170 |
| SgeI | CNNG | 8 cut(s) | 46, 60, 80, 112, 122, 164, 176, 203 |
| Sse9I | AATT | 5 cut(s) | 37, 62, 103, 137, 234 |
| TasI | AATT | 5 cut(s) | 37, 62, 103, 137, 234 |
| TfiI | GAWTC | 1 cut(s) | 160 |
| TseFI | GTSAC | 1 cut(s) | 174 |
| TseI | GCWGC | 1 cut(s) | 169 |
| Tsp45I | GTSAC | 1 cut(s) | 174 |
| TspDTI | ATGAA | 3 cut(s) | 50, 71, 116 |
| XapI | RAATTY | 3 cut(s) | 37, 103, 234 |