Rh5AG207600

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015726
Physical Location & Seq
Reverse (-)
24475616 .. 24478592
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG207600.1

Sequence Viewer

Length: 630 bp
ATGGGAAAGGTGCTGCATGGCTTCGGCTTATTTGCTTGCATTGCTGTTCTCCTAGCATTGTGCCTTCTTCTACTTCTTCATGATGGCCAGTATTGCTGTGGAAGAGTGCAGAAGAAGCAGGTGAATGAGTCGCAGTCAATAGGCGGAAGCTGTAACTTGTTTGAAGGGAGTTGGGTTTATGATGATACGTATCCGCTCTACGACACTTTTTCCAGCTGCCCTTTTGTTGAGAAAGAGTTTGACTGTCGGAAAAATGGAAGGCCGGACAGTCAGTATCTCAAACTTAGATGGAAGCCAGACACTTGTGCTTTGCCAAGTGGAAAAGAATGGAACGACACTGATTCGACAACTTGCAGTGGACAAACTCAACCTATAAGTGGTTCAACTTACCCCGGAGGTTCACCACCAGCAACAACTGTGGTCAACCATGTGTTGGCCAAAATGTCGTCTCCAGCAACTTTGCTGGACATAACGTTACTGTCGCAGTTGAGAAAAGACGGGCACCCATCTGTATATGGTTTCGGTGGGAAAGCGGGAAATGATTGTAGTCACTGGTGCCTTAGTGGTGTCCCTGATACCTGGAATGAACTATTATATGCAACTCTTGTGACTACTGACCAAAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

209

Amino Acids

22.83

Weight (kDa)

5.91

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 50 - 102 8.2e-22 PMR5 N terminal Domain
PC-Esterase PF13839 107 - 200 8e-30 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 2 cut(s) 501, 555
AccB7I CCANNNNNTGG 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 196
AciI CCGC 3 cut(s) 144, 194, 533
AclI AACGTT 1 cut(s) 473
AcoI YGGCCR 2 cut(s) 85, 435
AfiI CCNNNNNNNGG 2 cut(s) 377, 433
AgsI TTSAA 2 cut(s) 164, 384
AjnI CCWGG 1 cut(s) 578
AluBI AGCT 3 cut(s) 150, 216, 627
AluI AGCT 3 cut(s) 150, 216, 627
Alw26I GTCTC 1 cut(s) 453
AoxI GGCC 3 cut(s) 85, 260, 435
ApeKI GCWGC 2 cut(s) 13, 216
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 133, 393
BaeGI GKGCMC 1 cut(s) 504
BalI TGGCCA 2 cut(s) 87, 437
BanI GGYRCC 2 cut(s) 501, 555
BbvI GCAGC 1 cut(s) 203
BccI CCATC 3 cut(s) 77, 282, 514
BciT130I CCWGG 1 cut(s) 580
BciVI GTATCC 1 cut(s) 201
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 2 cut(s) 53, 628
BfuAI ACCTGC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 201
BisI GCNGC 2 cut(s) 14, 217
BlsI GCNGC 2 cut(s) 15, 218
Bme1390I CCNGG 2 cut(s) 393, 580
BmiI GGNNCC 2 cut(s) 503, 557
BmrFI CCNGG 2 cut(s) 393, 580
BpmI CTGGAG 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 433
Bse1I ACTGG 2 cut(s) 88, 557
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 1 cut(s) 391
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 377, 433
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 88, 557
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 128
BshFI GGCC 3 cut(s) 87, 262, 437
BshNI GGYRCC 2 cut(s) 501, 555
BsiSI CCGG 2 cut(s) 263, 393
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 377, 433
BsmAI GTCTC 1 cut(s) 453
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 3 cut(s) 87, 262, 437
Bsp1286I GDGCHC 1 cut(s) 504
BspACI CCGC 3 cut(s) 144, 194, 533
BspANI GGCC 3 cut(s) 87, 262, 437
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 503, 557
BspMI ACCTGC 1 cut(s) 109
BspT107I GGYRCC 2 cut(s) 501, 555
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 2 cut(s) 88, 557
BssECI CCNNGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 580
Bst4CI ACNGT 4 cut(s) 245, 269, 418, 480
Bst6I CTCTTC 1 cut(s) 97
BstBAI YACGTR 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 284, 560
BstMAI GTCTC 1 cut(s) 453
BstMWI GCNNNNNNNGC 3 cut(s) 41, 93, 115
BstNI CCWGG 1 cut(s) 580
BstSCI CCNGG 2 cut(s) 391, 578
BstSLI GKGCMC 1 cut(s) 504
BstSNI TACGTA 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 203
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 3 cut(s) 87, 262, 437
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 336, 361, 550
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 37
CciI TCATGA 1 cut(s) 79
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 3 cut(s) 17, 80, 428
CviJI RGCY 9 cut(s) 21, 27, 87, 150, 216, 262, 295, 437, 627
CviKI_1 RGCY 9 cut(s) 21, 27, 87, 150, 216, 262, 295, 437, 627
DdeI CTNAG 2 cut(s) 284, 560
EaeI YGGCCR 2 cut(s) 85, 435
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 159
Eco105I TACGTA 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 578
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 3 cut(s) 20, 83, 431
FaqI GGGAC 1 cut(s) 554
FatI CATG 3 cut(s) 16, 79, 427
FauI CCCGC 1 cut(s) 526
Fnu4HI GCNGC 2 cut(s) 14, 217
Fsp4HI GCNGC 2 cut(s) 14, 217
FspBI CTAG 2 cut(s) 53, 628
GluI GCNGC 2 cut(s) 14, 217
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 3 cut(s) 87, 262, 437
HapII CCGG 2 cut(s) 263, 393
Hin1II CATG 3 cut(s) 20, 83, 431
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 2 cut(s) 128, 341
HpaII CCGG 2 cut(s) 263, 393
HphI GGTGA 2 cut(s) 133, 393
Hpy166II GTNNAC 3 cut(s) 359, 401, 424
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 3 cut(s) 359, 401, 424
HpyAV CCTTC 3 cut(s) 74, 158, 252
HpyCH4III ACNGT 4 cut(s) 245, 269, 418, 480
HpyCH4IV ACGT 2 cut(s) 188, 473
HpyCH4V TGCA 5 cut(s) 16, 39, 109, 354, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 93, 115
HpyF3I CTNAG 2 cut(s) 284, 560
HpySE526I ACGT 2 cut(s) 188, 473
Hsp92II CATG 3 cut(s) 20, 83, 431
LmnI GCTCC 1 cut(s) 624
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 2 cut(s) 53, 628
MaeII ACGT 2 cut(s) 188, 473
MaeIII GTNAC 4 cut(s) 152, 474, 548, 607
MbiI CCGCTC 1 cut(s) 196
MboII GAAGA 4 cut(s) 59, 68, 114, 124
MhlI GDGCHC 1 cut(s) 504
MlsI TGGCCA 2 cut(s) 87, 437
MluNI TGGCCA 2 cut(s) 87, 437
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 1 cut(s) 389
Mox20I TGGCCA 2 cut(s) 87, 437
MscI TGGCCA 2 cut(s) 87, 437
Msp20I TGGCCA 2 cut(s) 87, 437
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 2 cut(s) 263, 393
MspR9I CCNGG 2 cut(s) 393, 580
MvaI CCWGG 1 cut(s) 580
MwoI GCNNNNNNNGC 3 cut(s) 41, 93, 115
NciI CCSGG 1 cut(s) 393
NlaIII CATG 3 cut(s) 20, 83, 431
NlaIV GGNNCC 2 cut(s) 503, 557
NmuCI GTSAC 2 cut(s) 548, 607
PagI TCATGA 1 cut(s) 79
PaqCI CACCTGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 433
PkrI GCNGC 2 cut(s) 15, 218
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 2 cut(s) 503, 557
PvuII CAGCTG 1 cut(s) 216
SatI GCNGC 2 cut(s) 14, 217
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 393, 580
SduI GDGCHC 1 cut(s) 504
SnaBI TACGTA 1 cut(s) 189
SsiI CCGC 3 cut(s) 144, 194, 533
SspMI CTAG 2 cut(s) 53, 628
StyD4I CCNGG 2 cut(s) 391, 578
TaaI ACNGT 4 cut(s) 245, 269, 418, 480
TaiI ACGT 2 cut(s) 191, 476
TaqI TCGA 1 cut(s) 344
TfiI GAWTC 1 cut(s) 341
TscAI CASTG 3 cut(s) 343, 361, 557
TseFI GTSAC 2 cut(s) 548, 607
TseI GCWGC 2 cut(s) 13, 216
Tsp45I GTSAC 2 cut(s) 548, 607
TspDTI ATGAA 2 cut(s) 68, 600
TspRI CASTG 3 cut(s) 343, 361, 557
Van91I CCANNNNNTGG 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 2 cut(s) 53, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.