RchiOBHm_Chr7g0208551

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015726
Physical Location & Seq
Reverse (-)
25968508 .. 25969335
828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18665

Sequence Viewer

Length: 432 bp
ATGGGGAAAATGTTGAATGGCTTTGGCCTATTTGTTTATGCTGTTCTAATACTAATCTTATTGCTTCTTGAACATGAAAACCAATATTGCTTTGCAGGAGTACTACAGAAGAAGAACAATGAGTCGCAAATAGGCACCAAATGCTACTTGTTTGATGGGAGTTGGATTTACGATGATACATACCCACTCTACGACACATCCAGCTGCCCTTTTATTGACAGAGAGTTCGACTGTCAGAAAAATGGACGCCCGGATAGTCAATATCTCAAGTATAGATGGAAGCCTAAGGGTTGTGCATTGCCCAGATTCAATGGTCAGGACTTCTTGAGGAGATTAAAGGGGAAGAAGATATTATTCGTAGGGGACTCTCTGAGCTATAACCAGTGGCAGTCACTAACATGTATGCCCCAAAGCCAAATGGGTCGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

143

Amino Acids

16.71

Weight (kDa)

8.88

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 47 - 98 3.8e-24 PMR5 N terminal Domain
PC-Esterase PF13839 100 - 139 8.7e-16 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 3 cut(s) 16, 71, 310
AluBI AGCT 2 cut(s) 204, 375
AluI AGCT 2 cut(s) 204, 375
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 204
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AsuC2I CCSGG 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 149, 270
BcnI CCSGG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BmcAI AGTACT 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 251
BpuEI CTTGAG 2 cut(s) 251, 346
BpuMI CCSGG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 382
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 296
BseGI GGATG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 1 cut(s) 27
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 296
BsrI ACTGG 1 cut(s) 382
BssNI GRCGYC 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 247
BstAPI GCANNNNNTGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 285, 371
BstF5I GGATG 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 389
CseI GACGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 101
CviAII CATG 2 cut(s) 74, 399
CviJI RGCY 6 cut(s) 21, 27, 204, 283, 375, 414
CviKI_1 RGCY 6 cut(s) 21, 27, 204, 283, 375, 414
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 285, 371
Eco81I CCTNAGG 1 cut(s) 285
FaeI CATG 2 cut(s) 77, 402
FaiI YATR 7 cut(s) 39, 75, 181, 273, 378, 400, 404
FaqI GGGAC 1 cut(s) 377
FatI CATG 2 cut(s) 73, 398
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 2 cut(s) 77, 402
HinfI GANTC 4 cut(s) 122, 306, 365, 426
HpaII CCGG 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 237, 372
Hpy188III TCNNGA 3 cut(s) 68, 317, 325
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 95, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 285, 371
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 2 cut(s) 77, 402
LpnPI CCDG 6 cut(s) 81, 214, 264, 302, 316, 395
Lsp1109I GCAGC 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 390
MboII GAAGA 4 cut(s) 121, 124, 355, 358
MlyI GAGTC 2 cut(s) 131, 359
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 1 cut(s) 321
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 397
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 141
NciI CCSGG 1 cut(s) 251
NlaIII CATG 2 cut(s) 77, 402
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 390
NspI RCATGY 1 cut(s) 402
PciI ACATGT 1 cut(s) 398
PfeI GAWTC 2 cut(s) 306, 426
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 2 cut(s) 130, 359
PpsI GAGTC 2 cut(s) 130, 359
PscI ACATGT 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 204
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 397
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 102
SchI GAGTC 2 cut(s) 131, 359
ScrFI CCNGG 1 cut(s) 251
SetI ASST 2 cut(s) 206, 377
SfcI CTRYAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 397
SmlI CTYRAG 2 cut(s) 266, 325
SmoI CTYRAG 2 cut(s) 266, 325
SspI AATATT 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 2 cut(s) 228, 424
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 2 cut(s) 306, 426
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 1 cut(s) 389
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 1 cut(s) 389
XceI RCATGY 1 cut(s) 402
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.