Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0015726

Physical Location & Seq

Genomic Coordinates Forward (+)

19316024 .. 19316958

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG194300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCCCTTCATCATCGGAGCATCCGGGAAATTTTTCTGTCAATCGATGGACTACGAAAGCTCGTCTGCAAATTTACCAGATGCCCACCCTTCTCAATGAGATTTGGAACCCCAACCCCAATCTCAAATGCCCACTCTTCTCTTTCAAAGGAGTACTAGAGAAGAAGAACAATGAGTCGCAAATAGGCACCAAATGCTACTTGTTTGATGGGAGTTGGATTTACGATGATACATACCCACTCTACGACACATCCAGCTGCCCTTTTATTGACAGAGAGTTCGACTGTCAGAAAAATGGATGCCCGGAGTTCGACTCTCTGAGCTATAACCAGTGGCAGTCACTAACATGTATGCTGCATTCTGCAGTACCCAAAGCCAAATATACTTCATCCAGTAAAGGAGATTTCTATACGCTTCTTTTGCCAGTGAGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

145

Amino Acids

16.7

Weight (kDa)

6.7

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	65 - 117	1e-14	PMR5 N terminal Domain
PC-Esterase	PF13839	105 - 136	1.9e-06	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015726)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g23210
rosa_chinensis	RchiOBHm_Chr4g0400051 RchiOBHm_Chr5g0025161 RchiOBHm_Chr7g0208551
rosa_multiflora	Rmu_sc0001942.1_g000090
rosa_roxburghii	Rroxscaffold_1G00036260
rosa_samantha	Rh3DG083800 Rh5AG207500 Rh5AG207600 Rh5BG189300 Rh5CG194300 Rh5DG317800 Rh7AG239400 Rh7DG245400 Rh7DG427600
rosa_wichuraiana	Rw1G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	31, 72
AfaI	GTAC	2 cut(s)	156, 369
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	3 cut(s)	62, 258, 324
AluI	AGCT	3 cut(s)	62, 258, 324
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	258, 355
ApoI	RAATTY	2 cut(s)	31, 72
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	27, 305
BanI	GGYRCC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	245, 342
BccI	CCATC	2 cut(s)	42, 203
BcnI	CCSGG	2 cut(s)	27, 305
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	363
BisI	GCNGC	2 cut(s)	259, 356
BlsI	GCNGC	2 cut(s)	260, 357
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	27, 305
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 110, 190
BmrFI	CCNGG	2 cut(s)	27, 305
BmsI	GCATC	3 cut(s)	31, 72, 290
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpuMI	CCSGG	2 cut(s)	27, 305
Bsa29I	ATCGAT	1 cut(s)	46
Bse1I	ACTGG	3 cut(s)	331, 393, 425
BseCI	ATCGAT	1 cut(s)	46
BseGI	GGATG	4 cut(s)	22, 251, 305, 389
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	331, 393, 425
BseXI	GCAGC	2 cut(s)	245, 342
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	26, 305
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	312
BspDI	ATCGAT	1 cut(s)	46
BspLI	GGNNCC	3 cut(s)	6, 110, 190
BspMAI	CTGCAG	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	188
BsrI	ACTGG	3 cut(s)	331, 393, 425
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	4 cut(s)	22, 251, 305, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 421
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	25, 303
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	245, 342
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	22, 251, 305, 389
BtsIMutI	CAGTG	2 cut(s)	338, 432
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	155, 368
CviAII	CATG	1 cut(s)	348
CviJI	RGCY	5 cut(s)	5, 62, 258, 324, 377
CviKI_1	RGCY	5 cut(s)	5, 62, 258, 324, 377
CviQI	GTAC	2 cut(s)	155, 368
DdeI	CTNAG	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
FaeI	CATG	1 cut(s)	351
FaiI	YATR	7 cut(s)	235, 327, 349, 353, 384, 411, 436
FatI	CATG	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	259, 356
FokI	GGATG	4 cut(s)	9, 238, 312, 376
Fsp4HI	GCNGC	2 cut(s)	259, 356
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	259, 356
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	26, 305
Hin1II	CATG	1 cut(s)	351
HinfI	GANTC	2 cut(s)	176, 314
HpaII	CCGG	2 cut(s)	26, 305
Hpy188I	TCNGA	3 cut(s)	19, 291, 321
HpyAV	CCTTC	2 cut(s)	18, 101
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	70, 358, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 421
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	39, 92, 268, 318, 344, 406
Lsp1109I	GCAGC	2 cut(s)	245, 342
LweI	GCATC	3 cut(s)	31, 72, 290
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	339
MboII	GAAGA	3 cut(s)	130, 175, 178
MluCI	AATT	2 cut(s)	31, 72
MlyI	GAGTC	2 cut(s)	185, 308
MmeI	TCCRAC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	34
MslI	CAYNNNNRTG	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	2 cut(s)	26, 305
MspR9I	CCNGG	2 cut(s)	27, 305
Mva1269I	GAATGC	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	195, 421
NciI	CCSGG	2 cut(s)	27, 305
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	3 cut(s)	6, 110, 190
NmuCI	GTSAC	1 cut(s)	339
NspI	RCATGY	1 cut(s)	351
PciI	ACATGT	1 cut(s)	347
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	260, 357
PleI	GAGTC	2 cut(s)	184, 308
PpsI	GAGTC	2 cut(s)	184, 308
PscI	ACATGT	1 cut(s)	347
PspN4I	GGNNCC	3 cut(s)	6, 110, 190
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	258
RsaI	GTAC	2 cut(s)	156, 369
RsaNI	GTAC	2 cut(s)	155, 368
RseI	CAYNNNNRTG	1 cut(s)	346
SatI	GCNGC	2 cut(s)	259, 356
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	2 cut(s)	185, 308
ScrFI	CCNGG	2 cut(s)	27, 305
SetI	ASST	3 cut(s)	64, 260, 326
SfaNI	GCATC	3 cut(s)	31, 72, 290
SfcI	CTRYAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	31, 72
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	25, 303
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	3 cut(s)	46, 282, 312
TasI	AATT	2 cut(s)	31, 72
TatI	WGTACW	1 cut(s)	154
TscAI	CASTG	2 cut(s)	338, 432
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	2 cut(s)	258, 355
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	338, 432
XapI	RAATTY	2 cut(s)	31, 72
XceI	RCATGY	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.