Rw1G028010

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015726
Physical Location & Seq
Reverse (-)
55528771 .. 55531767
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028010.1

Sequence Viewer

Length: 411 bp
ATGGATGCCCAGATAGTCAATATCTCAAGTGTAGATGGAAGCCTAAGGGTTGTGCATTGCCCAGGGGACTCTATGAGCTATAACCAGTGGCAGTCACTAACATGTATGCTGCATTCTGCAGTACCCAAAGCCAAATATACTTCATCCAGTAAAGGAGATTTCTATACGCTTCTTTTGCCAGAATATGAAGTTTCTGTGATGTTTTCTCGCAATAAGTTTCTAGTGGATCTGGTCCAAACAAAGGAGGGCATGGTTCTAAACCTTGACTCTATTGAAGGAGGGCATGGTTCACAGCTTTATTACAACAACCTGCACAAGTCCTCACTTAATTGGTCGTTTGCAAGAAAATTAAAGTTGTCACATAAACATTTACCGACCACTAATAGAAGTTGTCGCCTAATTGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

136

Amino Acids

15.35

Weight (kDa)

9.03

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 22 - 98 3.4e-16 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 318
AclWI GGATC 1 cut(s) 234
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 2 cut(s) 78, 295
AluI AGCT 2 cut(s) 78, 295
AlwI GGATC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 232
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 44
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 63
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 318
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 61, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 85, 147
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 61, 62
BseGI GGATG 2 cut(s) 10, 143
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 85, 147
BseXI GCAGC 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 318
BspPI GGATC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 2 cut(s) 85, 147
BssECI CCNNGG 2 cut(s) 61, 62
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 10, 143
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 10, 143
BtsIMutI CAGTG 1 cut(s) 92
BveI ACCTGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 122
CviAII CATG 3 cut(s) 102, 250, 284
CviJI RGCY 4 cut(s) 42, 78, 131, 295
CviKI_1 RGCY 4 cut(s) 42, 78, 131, 295
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 61
FaeI CATG 3 cut(s) 105, 253, 287
FaqI GGGAC 1 cut(s) 80
FatI CATG 3 cut(s) 101, 249, 283
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 2 cut(s) 17, 130
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 110
Hin1II CATG 3 cut(s) 105, 253, 287
HinfI GANTC 2 cut(s) 68, 266
Hpy166II GTNNAC 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 55, 112, 119, 313, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 3 cut(s) 105, 253, 287
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 23, 48, 75, 98, 160, 192, 215, 323
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 93, 357
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MflI RGATCY 1 cut(s) 226
MluCI AATT 3 cut(s) 328, 347, 399
MlyI GAGTC 2 cut(s) 62, 260
MnlI CCTC 3 cut(s) 238, 272, 331
MseI TTAA 2 cut(s) 327, 350
MslI CAYNNNNRTG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 1 cut(s) 226
NlaIII CATG 3 cut(s) 105, 253, 287
NmuCI GTSAC 2 cut(s) 93, 357
NspI RCATGY 1 cut(s) 105
PasI CCCWGGG 1 cut(s) 62
PciI ACATGT 1 cut(s) 101
PctI GAATGC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 2 cut(s) 62, 260
PpsI GAGTC 2 cut(s) 62, 260
PscI ACATGT 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspPI GGNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 327, 350
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 2 cut(s) 62, 260
ScrFI CCNGG 1 cut(s) 63
SetI ASST 4 cut(s) 80, 264, 297, 312
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 3 cut(s) 328, 347, 399
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 61
TasI AATT 3 cut(s) 328, 347, 399
Tru1I TTAA 2 cut(s) 327, 350
Tru9I TTAA 2 cut(s) 327, 350
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 2 cut(s) 93, 357
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 2 cut(s) 93, 357
TspDTI ATGAA 2 cut(s) 132, 201
TspRI CASTG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 232
XceI RCATGY 1 cut(s) 105
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.