Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0015726

Physical Location & Seq

Genomic Coordinates Forward (+)

377200 .. 378705

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000090.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgcccacccttctcaatgagatttggaaccccaaccccaatctcaaatgcccactcttctctttcaaaggagtactagagaagaagaacaatgagtcgcaaataggcaccaaatgctacttgtttgatgggagttggatttacgatgatacatacccactctacgacacatccagctgcccttttattgacagagagttcgactgtcagaaaaatggacgcccggatagtcaatatctcaagtatagatggaagcctaagggttgtgcattgcccagtatgttttttaccttctcaatgttctgcatgaatttgtatgctggcataatgaaggaattgcaggaaaagattgaagtgagtgacagtttgatcatgaatttgcaggctaagtttttgggattgaaggcagaattggatgaggaacatgggttgaatctggagctgcagtcacaagatagaaagcttggtgagaatcttgctgttgctgaagcaaagatagaactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

168

Amino Acids

19.43

Weight (kDa)

5.0

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015726)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g23210
rosa_chinensis	RchiOBHm_Chr4g0400051 RchiOBHm_Chr5g0025161 RchiOBHm_Chr7g0208551
rosa_multiflora	Rmu_sc0001942.1_g000090
rosa_roxburghii	Rroxscaffold_1G00036260
rosa_samantha	Rh3DG083800 Rh5AG207500 Rh5AG207600 Rh5BG189300 Rh5CG194300 Rh5DG317800 Rh7AG239400 Rh7DG245400 Rh7DG427600
rosa_wichuraiana	Rw1G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	310, 376
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	67, 353, 403, 433
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	3 cut(s)	177, 442, 463
AluI	AGCT	3 cut(s)	177, 442, 463
ApeKI	GCWGC	2 cut(s)	177, 442
ApoI	RAATTY	2 cut(s)	310, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	164, 429
BccI	CCATC	2 cut(s)	122, 243
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	443
BisI	GCNGC	2 cut(s)	178, 443
BlsI	GCNGC	2 cut(s)	179, 444
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	29, 109
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bse1I	ACTGG	1 cut(s)	276
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	170, 421
BseMI	GCAATG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	164, 429
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	29, 109
BspMAI	CTGCAG	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	369
BssNI	GRCGYC	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	206, 365
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	322, 384
BstDEI	CTNAG	2 cut(s)	258, 387
BstF5I	GGATG	2 cut(s)	170, 421
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	164, 429
Bsu36I	CCTNAGG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	170, 421
Cac8I	GCNNGC	2 cut(s)	322, 384
CciI	TCATGA	1 cut(s)	372
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	3 cut(s)	307, 373, 425
CviJI	RGCY	5 cut(s)	177, 256, 386, 442, 463
CviKI_1	RGCY	5 cut(s)	177, 256, 386, 442, 463
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	258, 387
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	310, 376, 428
FaiI	YATR	8 cut(s)	154, 246, 281, 308, 318, 326, 374, 426
FatI	CATG	3 cut(s)	306, 372, 424
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	178, 443
FokI	GGATG	2 cut(s)	157, 428
Fsp4HI	GCNGC	2 cut(s)	178, 443
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	2 cut(s)	178, 443
GsuI	CTGGAG	1 cut(s)	458
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	310, 376, 428
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	95, 433, 472
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	479
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	373, 437
HpyAV	CCTTC	4 cut(s)	20, 301, 325, 397
HpyCH4III	ACNGT	2 cut(s)	206, 365
HpyCH4V	TGCA	5 cut(s)	269, 306, 340, 382, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	258, 387
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	3 cut(s)	310, 376, 428
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	7 cut(s)	187, 237, 289, 306, 326, 368, 422
Lsp1109I	GCAGC	2 cut(s)	164, 429
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	359, 447
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	3 cut(s)	49, 94, 97
MluCI	AATT	4 cut(s)	310, 335, 376, 410
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	1 cut(s)	412
MseI	TTAA	1 cut(s)	505
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	3 cut(s)	310, 376, 428
NlaIV	GGNNCC	2 cut(s)	29, 109
NmuCI	GTSAC	2 cut(s)	359, 447
PagI	TCATGA	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	433, 472
PkrI	GCNGC	2 cut(s)	179, 444
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	29, 109
PstI	CTGCAG	1 cut(s)	447
PvuII	CAGCTG	1 cut(s)	177
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	2 cut(s)	178, 443
Sau3AI	GATC	1 cut(s)	369
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	4 cut(s)	179, 293, 444, 465
SfcI	CTRYAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	4 cut(s)	310, 335, 376, 410
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	206, 365
TaqI	TCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	310, 335, 376, 410
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	433, 472
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	359, 447
TseI	GCWGC	2 cut(s)	177, 442
Tsp45I	GTSAC	2 cut(s)	359, 447
TspDTI	ATGAA	3 cut(s)	323, 344, 389
XapI	RAATTY	2 cut(s)	310, 376
XspI	CTAG	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.