Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015726

Physical Location & Seq

Genomic Coordinates Reverse (-)

24469821 .. 24472500

Gene Structure 2680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGAAAATGTTGAATGGATTTGGCCTATTTGTTTATGCTGTTCTAATACTAATCTTATTGCTTCTTGAACATGAAAACCAATATTGCTTTGCAGGAGTACTAGAGAAGAAGAACAATGAGTCGCAAATCGGCACCAAATGCGACTTGTTTGATGGGAGTTGGATTTACGATGATACATACCCACTCTACGACACATCCAGCTGCCCTTTTATTGACAGAGAGTTCGACTGTCAGAAAAATGGACGCCCGGATAGTCAATATCTCAAGTATAGATGGAAGCCTAAGGGTTGTGCATTGCCCAGTGGAGAGGAATGGGGAGGGCAAAAATCATCAAACTGCATAGGACAAACTCAACCTGTTAATGGTTCAACATATCCCGGAGGTTCACCACCACCGGCAGCGGTGGTCCATGAAGTATTGAACAAAATGTCACAGCCAGTAACTCTGTTGGACATAACGTTACTATCCCAACTGAGAAAAGATGGTCACCCATCTCTATATGGCATAGATGGCAAAAAGGGAAGTGACTGTAGCCATTGGTGTCTTGCTGGTGTTCCGGACACATGGAATGAACTATTCTATGCAATTCTTGTGACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

201

Amino Acids

22.34

Weight (kDa)

5.32

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	47 - 98	2.1e-25	PMR5 N terminal Domain
PC-Esterase	PF13839	103 - 196	7.3e-29	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015726)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g23210
rosa_chinensis	RchiOBHm_Chr4g0400051 RchiOBHm_Chr5g0025161 RchiOBHm_Chr7g0208551
rosa_multiflora	Rmu_sc0001942.1_g000090
rosa_roxburghii	Rroxscaffold_1G00036260
rosa_samantha	Rh3DG083800 Rh5AG207500 Rh5AG207600 Rh5BG189300 Rh5CG194300 Rh5DG317800 Rh7AG239400 Rh7DG245400 Rh7DG427600
rosa_wichuraiana	Rw1G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	1 cut(s)	404
AclI	AACGTT	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	16, 71, 372, 424
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	204, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	2 cut(s)	251, 381
AsuHPI	GGTGA	2 cut(s)	381, 482
AvaII	GGWCC	1 cut(s)	409
AxyI	CCTNAGG	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	191, 413
BccI	CCATC	5 cut(s)	149, 270, 479, 502, 506
BcnI	CCSGG	2 cut(s)	251, 381
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	532
BisI	GCNGC	2 cut(s)	205, 402
BlsI	GCNGC	2 cut(s)	206, 403
BmcAI	AGTACT	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	251, 381
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	251, 381
BmrI	ACTGGG	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	251, 381
BsaHI	GRCGYC	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	2 cut(s)	303, 440
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	296
BseAI	TCCGGA	1 cut(s)	559
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	2 cut(s)	303, 440
BseXI	GCAGC	2 cut(s)	191, 413
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	251, 381, 398, 560
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	559
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	303, 440
BssAI	RCCGGY	1 cut(s)	397
BssNI	GRCGYC	1 cut(s)	247
Bst4CI	ACNGT	2 cut(s)	233, 533
BstACI	GRCGYC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	285, 476
BstEII	GGTNACC	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 513
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	249, 379
BstSFI	CTRYAG	1 cut(s)	532
BstV1I	GCAGC	2 cut(s)	191, 413
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	3 cut(s)	74, 413, 567
CviJI	RGCY	5 cut(s)	27, 204, 283, 439, 537
CviKI_1	RGCY	5 cut(s)	27, 204, 283, 439, 537
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	2 cut(s)	285, 476
Eco47I	GGWCC	1 cut(s)	409
Eco81I	CCTNAGG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	488
EcoO65I	GGTNACC	1 cut(s)	488
FaeI	CATG	3 cut(s)	77, 416, 570
FatI	CATG	3 cut(s)	73, 412, 566
Fnu4HI	GCNGC	2 cut(s)	205, 402
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	205, 402
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	2 cut(s)	205, 402
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	4 cut(s)	251, 381, 398, 560
HgaI	GACGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	77, 416, 570
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	4 cut(s)	251, 381, 398, 560
HphI	GGTGA	2 cut(s)	381, 482
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	68, 560
Hpy8I	GTNNAC	1 cut(s)	389
HpyCH4III	ACNGT	2 cut(s)	233, 533
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	4 cut(s)	95, 296, 342, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 513
HpyF3I	CTNAG	2 cut(s)	285, 476
HpySE526I	ACGT	1 cut(s)	461
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	77, 416, 570
Kpn2I	TCCGGA	1 cut(s)	559
Lsp1109I	GCAGC	2 cut(s)	191, 413
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	6 cut(s)	432, 442, 462, 488, 527, 595
MboII	GAAGA	2 cut(s)	121, 124
MluCI	AATT	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	143, 432
MnlI	CCTC	3 cut(s)	304, 314, 377
MroI	TCCGGA	1 cut(s)	559
MseI	TTAA	2 cut(s)	363, 604
MspA1I	CMGCKG	2 cut(s)	204, 404
MspI	CCGG	4 cut(s)	251, 381, 398, 560
MspR9I	CCNGG	2 cut(s)	251, 381
MwoI	GCNNNNNNNGC	2 cut(s)	141, 513
NciI	CCSGG	2 cut(s)	251, 381
NlaIII	CATG	3 cut(s)	77, 416, 570
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	4 cut(s)	432, 488, 527, 595
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	206, 403
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp1406I	AACGTT	1 cut(s)	461
PspEI	GGTNACC	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	204
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	363, 604
SatI	GCNGC	2 cut(s)	205, 402
Sau96I	GGNCC	1 cut(s)	409
ScaI	AGTACT	1 cut(s)	102
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	251, 381
SetI	ASST	4 cut(s)	206, 361, 388, 464
SfcI	CTRYAG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	588
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	249, 379
TaaI	ACNGT	2 cut(s)	233, 533
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	588
TatI	WGTACW	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	363, 604
Tru9I	TTAA	2 cut(s)	363, 604
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	4 cut(s)	432, 488, 527, 595
TseI	GCWGC	2 cut(s)	204, 401
Tsp45I	GTSAC	4 cut(s)	432, 488, 527, 595
TspDTI	ATGAA	3 cut(s)	90, 429, 588
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	409
XspI	CTAG	1 cut(s)	104
ZrmI	AGTACT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.