pycom17g23940

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013534
Physical Location & Seq
Reverse (-)
22192617 .. 22193915
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1299 bp
ATGTCTTCCTTTTCACTTTCTTCCATTGCCTGCCATGTATTTTCATTGCTCCTAACTTTCCTTCTAGTTCTATCTTGTCTGTTCAGCAATTTCAGTCTGGCTGTTGCTGCAAAGCGCAGCAGCAGCCACGTCTATGTCTCTCATCACCGTCATAGCCACCGCGGGCACCACAACCATCCACATCCTGCTGCAGCATCCGATGATTCAAACCCAAGACTCTACCAAGCTTTTCTTGCTCTCCAAGCATGGAAGCACGTAATTTACTCTGATCCATACAACATCACAACCAATTGGGTTGGTCCTTCGGTTTGTAACTACATGGGTGTGTATTGTTCACCAGCTCTTGATGACCCCAAGATCCAAGTTGTTTCTGGCATTGACCTTAACCATAGGGACATCGCCGGATTTCTCCCTGAGGAATTTGGCCTGTTGTCGGATCTTGCACTTATCCATCTAAATAGCAACCGCTTTTGTGGCATCCTCCCTCAAAGTATGGCCAACCTTACGCTCCTTTTCGAGCTTGATCTTAGTAACAACAGATTTGTAGGCCCTTTCCCAACAGTTGTCCTCTCTCTTCCTACCTTAAGTTATCTTGATCTTCGGTACAACGAGTTTGAAGGGCCATTACCTCCAGAACTTTTCAGTAAAAAACTCGATGCCATATTTGTTAATAACAACCGCTTAACCAGTGTCATTCCAGCGACATTGGGTGGAAGCTCAGCCAGTGTAGTGGTGTTTGCTAATAACAACTTTGGCGGGTGCCTTCCCCCAAGCATAGTCAATTTCGCAAATACTCTGGAGGAACTGCTGTTAATTAACACAAGTTTGTCAGGGTGTTTGCCCCAAGAAGTTGGGTTTCTGTACAAACTGAGGGTGTTGGATGTGAGCAACAACAAGCTTGTTGGTCCTATACCTTACAGCTTGGCGGGGCTATCTCATTTGGAGCAACTAAATTTGGCCCACAATAAGCTGACCGGGATTGTACCCGCTGGAGTTTGTTGTCTGCCAAACTTGGCGAATTTCACATTCTCTTACAACTATTTCTGTGAGGAAGAGGGGACCTGCCAGAATTTGACATCGAAAGGCATTGCCTTTGATGAACGCCATAACTGTTTCCCCGAGAAACCTTACCAGAGGACCCAGAAAGAATGTAATGCCATACTCGAACATCCTGTTGATTGCTTTGAATATCCTTGTGACAGTGGCGGTGCATCTGCTTCCGCCCCAAGCATTGCTGCAGTGCCAGCAGCAACGCCTCTGTCTTCGCCTCCTAGTGCGGCAGCTCCTACCTATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

433

Amino Acids

47.02

Weight (kDa)

5.9

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 289 - 347 4.7e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28380
fragaria_vesca FvH4_6g26510
malus_domestica MD17G1236200.v1.1
prunus_persica Prupe.3G139500_v2.0.a1
pyrus_communis pycom17g23940
rosa_chinensis RchiOBHm_Chr2g0127651
rosa_laevigata RLG00000018945
rosa_multiflora Rmu_co8443749.1_g000001 Rmu_sc0005528.1_g000004 Rmu_sc0005528.1_g000005 Rmu_ssc0000200.1_g000005
rosa_roxburghii Rroxscaffold_2G00116700
rosa_rugosa Rorug02G0272100
rosa_samantha Rh2AG324100 Rh2BG333200 Rh2CG311600 Rh2DG351500
rosa_wichuraiana Rw2G026310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1070
AccB1I GGYRCC 2 cut(s) 165, 759
AccII CGCG 1 cut(s) 162
AclWI GGATC 3 cut(s) 263, 352, 444
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 4 cut(s) 419, 952, 1018, 1069
AfaI GTAC 3 cut(s) 605, 863, 984
AfiI CCNNNNNNNGG 1 cut(s) 433
AflII CTTAAG 1 cut(s) 583
AgsI TTSAA 3 cut(s) 207, 617, 1187
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 8 cut(s) 227, 341, 520, 717, 898, 921, 970, 1283
AluI AGCT 8 cut(s) 227, 341, 520, 717, 898, 921, 970, 1283
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 3 cut(s) 263, 352, 444
Ama87I CYCGRG 1 cut(s) 1118
AoxI GGCC 5 cut(s) 424, 495, 547, 620, 957
ApeKI GCWGC 9 cut(s) 107, 117, 120, 123, 188, 191, 1235, 1247, 1280
ApoI RAATTY 4 cut(s) 419, 952, 1018, 1069
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
AsuC2I CCSGG 1 cut(s) 976
AsuHPI GGTGA 2 cut(s) 137, 327
AvaI CYCGRG 1 cut(s) 1118
AvaII GGWCC 4 cut(s) 299, 905, 1059, 1137
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 2 cut(s) 165, 759
BarI GAAGNNNNNNTAC 2 cut(s) 609, 641
BbsI GAAGAC 1 cut(s) 1254
BbvI GCAGC 9 cut(s) 94, 129, 132, 135, 175, 203, 1222, 1259, 1292
BccI CCATC 2 cut(s) 183, 459
BcnI CCSGG 1 cut(s) 976
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 2 cut(s) 65, 1272
BfmI CTRYAG 2 cut(s) 189, 1236
BfrI CTTAAG 1 cut(s) 583
BfuAI ACCTGC 1 cut(s) 1070
BlpI GCTNAGC 1 cut(s) 718
Bme1390I CCNGG 1 cut(s) 976
Bme18I GGWCC 4 cut(s) 299, 905, 1059, 1137
BmeT110I CYCGRG 1 cut(s) 1118
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
BmiI GGNNCC 4 cut(s) 167, 761, 1060, 1139
BmrFI CCNGG 1 cut(s) 976
BmsI GCATC 4 cut(s) 203, 486, 646, 1220
BpiI GAAGAC 1 cut(s) 1254
BpmI CTGGAG 3 cut(s) 615, 818, 1011
Bpu1102I GCTNAGC 1 cut(s) 718
BpuMI CCSGG 1 cut(s) 976
BsaAI YACGTR 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 687, 723
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 4 cut(s) 24, 44, 1086, 1230
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 6 cut(s) 175, 181, 194, 477, 886, 1168
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 4 cut(s) 24, 44, 1086, 1230
BseMII CTCAG 3 cut(s) 405, 732, 860
BseNI ACTGG 2 cut(s) 687, 723
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 9 cut(s) 94, 129, 132, 135, 175, 203, 1222, 1259, 1292
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 5 cut(s) 426, 497, 549, 622, 959
BshNI GGYRCC 2 cut(s) 165, 759
BsiHKCI CYCGRG 1 cut(s) 1118
BsiSI CCGG 2 cut(s) 402, 975
BslFI GGGAC 2 cut(s) 407, 1072
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 2 cut(s) 407, 1072
BsnI GGCC 5 cut(s) 426, 497, 549, 622, 959
BsoBI CYCGRG 1 cut(s) 1118
Bsp1286I GDGCHC 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 861
Bsp143I GATC 5 cut(s) 268, 357, 436, 523, 595
Bsp1720I GCTNAGC 1 cut(s) 718
BspANI GGCC 5 cut(s) 426, 497, 549, 622, 959
BspCNI CTCAG 3 cut(s) 406, 731, 861
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 4 cut(s) 167, 761, 1060, 1139
BspMAI CTGCAG 2 cut(s) 193, 1240
BspMI ACCTGC 1 cut(s) 1070
BspPI GGATC 3 cut(s) 263, 352, 444
BspT107I GGYRCC 2 cut(s) 165, 759
BspTI CTTAAG 1 cut(s) 583
BsrDI GCAATG 4 cut(s) 24, 44, 1086, 1230
BsrGI TGTACA 1 cut(s) 861
BsrI ACTGG 2 cut(s) 687, 723
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 5 cut(s) 268, 357, 436, 523, 595
Bst4CI ACNGT 4 cut(s) 149, 562, 1112, 1202
Bst6I CTCTTC 2 cut(s) 579, 1047
BstAFI CTTAAG 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 861
BstBAI YACGTR 1 cut(s) 256
BstC8I GCNNGC 3 cut(s) 31, 164, 1245
BstDEI CTNAG 4 cut(s) 414, 527, 718, 869
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 6 cut(s) 175, 181, 194, 477, 886, 1168
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 5 cut(s) 271, 360, 439, 526, 598
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 5 cut(s) 268, 357, 436, 523, 595
BstMWI GCNNNNNNNGC 6 cut(s) 107, 123, 233, 242, 474, 1244
BstSCI CCNGG 1 cut(s) 974
BstSFI CTRYAG 2 cut(s) 189, 1236
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 9 cut(s) 94, 129, 132, 135, 175, 203, 1222, 1259, 1292
BstV2I GAAGAC 1 cut(s) 1254
BstX2I RGATCY 2 cut(s) 357, 436
BstXI CCANNNNNNTGG 2 cut(s) 730, 851
BstYI RGATCY 2 cut(s) 357, 436
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 5 cut(s) 426, 497, 549, 622, 959
BtgI CCRYGG 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 382
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 6 cut(s) 175, 181, 194, 477, 886, 1168
BtsI GCAGTG 1 cut(s) 1245
BtsIMutI CAGTG 4 cut(s) 694, 730, 1207, 1245
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 3 cut(s) 31, 164, 1245
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
Cfr42I CCGCGG 1 cut(s) 163
Csp6I GTAC 3 cut(s) 604, 862, 983
CviAII CATG 4 cut(s) 35, 246, 319, 1296
CviQI GTAC 3 cut(s) 604, 862, 983
DdeI CTNAG 4 cut(s) 414, 527, 718, 869
DpnI GATC 5 cut(s) 270, 359, 438, 525, 597
DpnII GATC 5 cut(s) 268, 357, 436, 523, 595
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 579, 1047
EarI CTCTTC 2 cut(s) 579, 1047
EciI GGCGGA 1 cut(s) 1210
Eco47I GGWCC 4 cut(s) 299, 905, 1059, 1137
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 1118
EcoO109I RGGNCCY 3 cut(s) 548, 1059, 1137
FaeI CATG 4 cut(s) 38, 249, 322, 1299
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 407, 1072
FatI CATG 4 cut(s) 34, 245, 318, 1295
FauI CCCGC 4 cut(s) 155, 749, 919, 994
FokI GGATG 6 cut(s) 162, 168, 181, 464, 893, 1155
FspBI CTAG 2 cut(s) 65, 1272
GlaI GCGC 1 cut(s) 116
GsuI CTGGAG 3 cut(s) 615, 818, 1011
HaeIII GGCC 5 cut(s) 426, 497, 549, 622, 959
HapII CCGG 2 cut(s) 402, 975
HhaI GCGC 1 cut(s) 117
Hin1II CATG 4 cut(s) 38, 249, 322, 1299
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 2 cut(s) 225, 896
HinfI GANTC 2 cut(s) 203, 216
HpaII CCGG 2 cut(s) 402, 975
HphI GGTGA 2 cut(s) 137, 327
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 3 cut(s) 199, 268, 436
Hpy188III TCNNGA 4 cut(s) 344, 593, 632, 797
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 4 cut(s) 71, 312, 611, 773
HpyCH4III ACNGT 4 cut(s) 149, 562, 1112, 1202
HpyCH4IV ACGT 2 cut(s) 129, 255
HpyCH4V TGCA 5 cut(s) 110, 191, 443, 1211, 1238
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 123, 233, 242, 474, 1244
HpyF3I CTNAG 4 cut(s) 414, 527, 718, 869
HpySE526I ACGT 2 cut(s) 129, 255
Hsp92II CATG 4 cut(s) 38, 249, 322, 1299
HspAI GCGC 1 cut(s) 115
KspI CCGCGG 1 cut(s) 163
Kzo9I GATC 5 cut(s) 268, 357, 436, 523, 595
LmnI GCTCC 4 cut(s) 54, 513, 943, 1288
Lsp1109I GCAGC 9 cut(s) 94, 129, 132, 135, 175, 203, 1222, 1259, 1292
LweI GCATC 4 cut(s) 203, 486, 646, 1220
MaeI CTAG 2 cut(s) 65, 1272
MaeII ACGT 2 cut(s) 129, 255
MaeIII GTNAC 3 cut(s) 311, 530, 1196
MalI GATC 5 cut(s) 270, 359, 438, 525, 597
MboI GATC 5 cut(s) 268, 357, 436, 523, 595
MboII GAAGA 5 cut(s) 12, 566, 590, 1064, 1254
MfeI CAATTG 1 cut(s) 289
MflI RGATCY 2 cut(s) 357, 436
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 9 cut(s) 88, 258, 289, 419, 781, 813, 952, 1018, 1069
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 2 cut(s) 414, 858
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 6 cut(s) 384, 584, 669, 683, 812, 816
MslI CAYNNNNRTG 2 cut(s) 132, 323
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 162, 989
MspCI CTTAAG 1 cut(s) 583
MspI CCGG 2 cut(s) 402, 975
MspR9I CCNGG 1 cut(s) 976
MunI CAATTG 1 cut(s) 289
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 6 cut(s) 107, 123, 233, 242, 474, 1244
NciI CCSGG 1 cut(s) 976
NdeII GATC 5 cut(s) 268, 357, 436, 523, 595
NlaIII CATG 4 cut(s) 38, 249, 322, 1299
NlaIV GGNNCC 4 cut(s) 167, 761, 1060, 1139
NmuCI GTSAC 1 cut(s) 1196
PacI TTAATTAA 1 cut(s) 816
PfeI GAWTC 1 cut(s) 203
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Ppu21I YACGTR 1 cut(s) 256
PpuMI RGGWCCY 2 cut(s) 1059, 1137
Psp5II RGGWCCY 2 cut(s) 1059, 1137
PspN4I GGNNCC 4 cut(s) 167, 761, 1060, 1139
PspPI GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
PspPPI RGGWCCY 2 cut(s) 1059, 1137
PstI CTGCAG 2 cut(s) 193, 1240
PsuI RGATCY 2 cut(s) 357, 436
RsaI GTAC 3 cut(s) 605, 863, 984
RsaNI GTAC 3 cut(s) 604, 862, 983
RseI CAYNNNNRTG 2 cut(s) 132, 323
SacII CCGCGG 1 cut(s) 163
SaqAI TTAA 6 cut(s) 384, 584, 669, 683, 812, 816
Sau3AI GATC 5 cut(s) 268, 357, 436, 523, 595
Sau96I GGNCC 7 cut(s) 299, 548, 620, 905, 958, 1059, 1137
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 976
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 4 cut(s) 203, 486, 646, 1220
SfcI CTRYAG 2 cut(s) 189, 1236
Sfr303I CCGCGG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 163
SinI GGWCC 4 cut(s) 299, 905, 1059, 1137
SmiMI CAYNNNNRTG 2 cut(s) 132, 323
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 9 cut(s) 88, 258, 289, 419, 781, 813, 952, 1018, 1069
SspMI CTAG 2 cut(s) 65, 1272
StyD4I CCNGG 1 cut(s) 974
TaaI ACNGT 4 cut(s) 149, 562, 1112, 1202
TaiI ACGT 2 cut(s) 132, 258
TaqI TCGA 4 cut(s) 516, 654, 1079, 1164
TasI AATT 9 cut(s) 88, 258, 289, 419, 781, 813, 952, 1018, 1069
TatI WGTACW 1 cut(s) 861
TauI GCSGC 1 cut(s) 1280
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 6 cut(s) 384, 584, 669, 683, 812, 816
Tru9I TTAA 6 cut(s) 384, 584, 669, 683, 812, 816
TscAI CASTG 4 cut(s) 694, 730, 1207, 1245
TseFI GTSAC 1 cut(s) 1196
TseI GCWGC 9 cut(s) 107, 117, 120, 123, 188, 191, 1235, 1247, 1280
Tsp45I GTSAC 1 cut(s) 1196
TspDTI ATGAA 2 cut(s) 33, 1113
TspRI CASTG 4 cut(s) 694, 730, 1207, 1245
Vha464I CTTAAG 1 cut(s) 583
VpaK11BI GGWCC 4 cut(s) 299, 905, 1059, 1137
XapI RAATTY 4 cut(s) 419, 952, 1018, 1069
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 2 cut(s) 65, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.