pycom17g25450

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
23538351 .. 23539371
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGGAGCCCAACACCAACACCGCCTTCCCCAACTCACCCGATTCTTCCAGACGTTTCTGCTCCGATTTCTCCTCAAATTTCCAGCCTATATACACACTTCCGAGCTCCCTCTCTCTGACTCCGTCCACCCGCTCCTCCTTCTCCGATACCGACTCCGACGAGCACCACCACAGTACGACGTCCCTCAACCAGGCTCAGCTGGTCCTCGAGTACGAGGAGCTCCGCGACCACTATGATCTATGCAATTCTCACCTCCGCAACCTCACTAACGAGCTCAACTCGATCCGCCGCGAGAACGCTCAACTCCGGTCGGTGAACACCGACCTCGTCAAGCTCCTTTCTTCGCAGGCCGCCTTCCAGAGCTTCCTCCCCTCGTCATCGTCATCGTCCGCGTATCAGAGTCCGACGGCGACGTCGTTTCTCGATGACTTTCGGCGACTAGGATTTGGATCTCTCGGTCTCGGTCCTCAGGACGGCGTCGTTTCCGAGGAATCCTCCGATATCAGTCCGACAAGCGTCATGGAGCGAAACAGATTCATCGACGCGGACCGGATCTCGCTCCCCAAGAGCATTTCCGTTCGCTCCTCGAATCGACCACGTGTCCCGAGCGTTTCTAGACCGATGACTCAAAGCCAGATGAAGGTGTTCAATCAGGGCATGCTGAAGACGGAGCTTTGCAACAAGTGGGAGGAGACGGGGACGTGTCCGTACCGGGATAATTGCCAGTTTGCTCACGGCGTTAGGGAGCTCCGTCCCGTGATGAGGCACCCGCGCTACAAGACTCAGCTCTGCCGGATGGTGTTAGCTGGTGGCGCGTGTCCTTACGGTCACCGGTGCCACTTCCGTCACTCGCTTACTGAGCAGGAGAAGCTGCAGTTGGCCGTCTCAGACTCGTTTTGA

Protein Analysis

300

Amino Acids

33.72

Weight (kDa)

7.13

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 222 - 246 5.6e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010741)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 412
AatII GACGTC 2 cut(s) 182, 416
AccB1I GGYRCC 2 cut(s) 765, 834
AccBSI CCGCTC 1 cut(s) 132
AccII CGCG 6 cut(s) 225, 291, 392, 545, 772, 815
AclWI GGATC 3 cut(s) 277, 457, 560
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 683
AcvI CACGTG 1 cut(s) 599
AcyI GRCGYC 3 cut(s) 179, 413, 477
AfaI GTAC 3 cut(s) 175, 212, 710
AfiI CCNNNNNNNGG 4 cut(s) 190, 473, 640, 762
AflIII ACRYGT 2 cut(s) 598, 701
AgeI ACCGGT 1 cut(s) 831
AgsI TTSAA 1 cut(s) 649
AhdI GACNNNNNGTC 1 cut(s) 599
AjiI CACGTC 1 cut(s) 702
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 4 cut(s) 8, 40, 860, 892
Alw21I GWGCWC 5 cut(s) 107, 165, 222, 276, 750
Alw26I GTCTC 3 cut(s) 464, 686, 889
AlwI GGATC 3 cut(s) 277, 457, 560
Ama87I CYCGRG 2 cut(s) 206, 604
AoxI GGCC 2 cut(s) 348, 879
ApeKI GCWGC 1 cut(s) 871
ApoI RAATTY 1 cut(s) 76
AsiGI ACCGGT 1 cut(s) 831
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 2 cut(s) 774, 815
AspS9I GGNCC 3 cut(s) 202, 464, 547
AsuC2I CCSGG 1 cut(s) 713
AsuHPI GGTGA 4 cut(s) 27, 242, 325, 821
AvaI CYCGRG 2 cut(s) 206, 604
AvaII GGWCC 3 cut(s) 202, 464, 547
AxyI CCTNAGG 1 cut(s) 468
BanI GGYRCC 2 cut(s) 765, 834
BanII GRGCYC 5 cut(s) 9, 107, 222, 276, 750
BbrPI CACGTG 1 cut(s) 599
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 5 cut(s) 107, 165, 222, 276, 750
BbvI GCAGC 1 cut(s) 858
BccI CCATC 1 cut(s) 790
BceAI ACGGC 4 cut(s) 423, 490, 751, 866
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 1 cut(s) 713
BcoDI GTCTC 3 cut(s) 464, 686, 889
BfaI CTAG 2 cut(s) 440, 615
BfmI CTRYAG 1 cut(s) 872
BisI GCNGC 3 cut(s) 289, 351, 872
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 3 cut(s) 290, 352, 873
Bme1390I CCNGG 2 cut(s) 191, 713
Bme18I GGWCC 3 cut(s) 202, 464, 547
BmeRI GACNNNNNGTC 1 cut(s) 599
BmeT110I CYCGRG 2 cut(s) 206, 604
BmgBI CACGTC 1 cut(s) 702
BmgT120I GGNCC 3 cut(s) 202, 464, 547
BmiI GGNNCC 3 cut(s) 6, 767, 836
BmrFI CCNGG 2 cut(s) 191, 713
BoxI GACNNNNGTC 1 cut(s) 515
BpiI GAAGAC 1 cut(s) 671
BplI GAGNNNNNCTC 4 cut(s) 263, 295, 479, 511
Bpu1102I GCTNAGC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 713
BsaAI YACGTR 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 448
BsaHI GRCGYC 3 cut(s) 179, 413, 477
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 3 cut(s) 306, 549, 831
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 473, 640, 762
Bse118I RCCGGY 1 cut(s) 831
Bse1I ACTGG 1 cut(s) 724
Bse21I CCTNAGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 448
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 1 cut(s) 801
BseJI GATNNNNATC 1 cut(s) 448
BseLI CCNNNNNNNGG 4 cut(s) 190, 473, 640, 762
BseMII CTCAG 5 cut(s) 209, 482, 797, 849, 900
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 5 cut(s) 61, 124, 230, 574, 704
BseXI GCAGC 1 cut(s) 858
Bsh1236I CGCG 6 cut(s) 225, 291, 392, 545, 772, 815
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 2 cut(s) 350, 881
BshNI GGYRCC 2 cut(s) 765, 834
BshTI ACCGGT 1 cut(s) 831
BsiEI CGRYCG 1 cut(s) 311
BsiHKAI GWGCWC 5 cut(s) 107, 165, 222, 276, 750
BsiHKCI CYCGRG 2 cut(s) 206, 604
BsiSI CCGG 5 cut(s) 307, 550, 712, 793, 832
BslFI GGGAC 4 cut(s) 166, 587, 712, 738
BslI CCNNNNNNNGG 4 cut(s) 190, 473, 640, 762
BsmAI GTCTC 3 cut(s) 464, 686, 889
BsmBI CGTCTC 2 cut(s) 686, 889
BsmFI GGGAC 4 cut(s) 166, 587, 712, 738
BsnI GGCC 2 cut(s) 350, 881
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 2 cut(s) 206, 604
Bsp1286I GDGCHC 6 cut(s) 9, 107, 165, 222, 276, 750
Bsp143I GATC 4 cut(s) 235, 282, 449, 552
Bsp1720I GCTNAGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 350, 881
BspCNI CTCAG 5 cut(s) 208, 481, 796, 850, 899
BspFNI CGCG 6 cut(s) 225, 291, 392, 545, 772, 815
BspLI GGNNCC 3 cut(s) 6, 767, 836
BspMAI CTGCAG 1 cut(s) 876
BspPI GGATC 3 cut(s) 277, 457, 560
BspT107I GGYRCC 2 cut(s) 765, 834
BspTNI GGTCTC 1 cut(s) 464
BsrBI CCGCTC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 831
BsrI ACTGG 1 cut(s) 724
BssAI RCCGGY 1 cut(s) 831
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 4 cut(s) 235, 282, 449, 552
BssNI GRCGYC 3 cut(s) 179, 413, 477
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 173, 827
BstACI GRCGYC 3 cut(s) 179, 413, 477
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 348, 659
BstDEI CTNAG 5 cut(s) 195, 468, 783, 858, 886
BstEII GGTNACC 1 cut(s) 827
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 801
BstFNI CGCG 6 cut(s) 225, 291, 392, 545, 772, 815
BstHHI GCGC 2 cut(s) 774, 815
BstKTI GATC 4 cut(s) 238, 285, 452, 555
BstMAI GTCTC 3 cut(s) 464, 686, 889
BstMBI GATC 4 cut(s) 235, 282, 449, 552
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 3 cut(s) 812, 859, 868
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 661
BstPAI GACNNNNGTC 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 827
BstSCI CCNGG 2 cut(s) 189, 711
BstSFI CTRYAG 1 cut(s) 872
BstUI CGCG 6 cut(s) 225, 291, 392, 545, 772, 815
BstV1I GCAGC 1 cut(s) 858
BstV2I GAAGAC 1 cut(s) 671
BstX2I RGATCY 2 cut(s) 449, 552
BstYI RGATCY 2 cut(s) 449, 552
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 2 cut(s) 350, 881
BtrI CACGTC 1 cut(s) 702
BtsCI GGATG 1 cut(s) 801
Cac8I GCNNGC 2 cut(s) 348, 659
CfoI GCGC 2 cut(s) 774, 815
Cfr10I RCCGGY 1 cut(s) 831
Cfr13I GGNCC 3 cut(s) 202, 464, 547
CpoI CGGWCCG 1 cut(s) 547
CseI GACGC 3 cut(s) 466, 505, 551
Csp6I GTAC 3 cut(s) 174, 211, 709
CspAI ACCGGT 1 cut(s) 831
CspI CGGWCCG 1 cut(s) 547
CviAII CATG 2 cut(s) 520, 658
CviQI GTAC 3 cut(s) 174, 211, 709
DdeI CTNAG 5 cut(s) 195, 468, 783, 858, 886
DpnI GATC 4 cut(s) 237, 284, 451, 554
DpnII GATC 4 cut(s) 235, 282, 449, 552
DrdI GACNNNNNNGTC 1 cut(s) 412
DriI GACNNNNNGTC 1 cut(s) 599
DseDI GACNNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 879
Eam1105I GACNNNNNGTC 1 cut(s) 599
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 4 cut(s) 105, 220, 274, 748
Eco24I GRGCYC 5 cut(s) 9, 107, 222, 276, 750
Eco31I GGTCTC 1 cut(s) 464
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 3 cut(s) 202, 464, 547
Eco53kI GAGCTC 4 cut(s) 105, 220, 274, 748
Eco57I CTGAAG 1 cut(s) 683
Eco72I CACGTG 1 cut(s) 599
Eco81I CCTNAGG 1 cut(s) 468
Eco88I CYCGRG 2 cut(s) 206, 604
Eco91I GGTNACC 1 cut(s) 827
EcoICRI GAGCTC 4 cut(s) 105, 220, 274, 748
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 827
EcoRII CCWGG 1 cut(s) 189
EcoRV GATATC 1 cut(s) 502
EcoT38I GRGCYC 5 cut(s) 9, 107, 222, 276, 750
Esp3I CGTCTC 2 cut(s) 686, 889
FaeI CATG 2 cut(s) 523, 661
FaiI YATR 6 cut(s) 89, 91, 234, 241, 521, 659
FaqI GGGAC 4 cut(s) 166, 587, 712, 738
FatI CATG 2 cut(s) 519, 657
FauI CCCGC 2 cut(s) 137, 777
Fnu4HI GCNGC 3 cut(s) 289, 351, 872
FokI GGATG 1 cut(s) 808
FriOI GRGCYC 5 cut(s) 9, 107, 222, 276, 750
Fsp4HI GCNGC 3 cut(s) 289, 351, 872
FspBI CTAG 2 cut(s) 440, 615
GlaI GCGC 2 cut(s) 773, 814
GluI GCNGC 3 cut(s) 289, 351, 872
HaeIII GGCC 2 cut(s) 350, 881
HapII CCGG 5 cut(s) 307, 550, 712, 793, 832
HgaI GACGC 3 cut(s) 466, 505, 551
HhaI GCGC 2 cut(s) 774, 815
Hin1I GRCGYC 3 cut(s) 179, 413, 477
Hin1II CATG 2 cut(s) 523, 661
Hin6I GCGC 2 cut(s) 772, 813
HinP1I GCGC 2 cut(s) 772, 813
HpaII CCGG 5 cut(s) 307, 550, 712, 793, 832
HphI GGTGA 4 cut(s) 27, 242, 325, 821
Hpy166II GTNNAC 2 cut(s) 126, 316
Hpy188III TCNNGA 6 cut(s) 48, 358, 422, 470, 604, 615
Hpy8I GTNNAC 2 cut(s) 126, 316
Hpy99I CGWCG 7 cut(s) 161, 181, 409, 415, 418, 482, 545
HpyAV CCTTC 4 cut(s) 34, 148, 364, 634
HpyCH4III ACNGT 2 cut(s) 173, 827
HpyCH4IV ACGT 5 cut(s) 52, 179, 413, 598, 701
HpyCH4V TGCA 3 cut(s) 243, 678, 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 812, 859, 868
HpyF3I CTNAG 5 cut(s) 195, 468, 783, 858, 886
HpySE526I ACGT 5 cut(s) 52, 179, 413, 598, 701
Hsp92I GRCGYC 3 cut(s) 179, 413, 477
Hsp92II CATG 2 cut(s) 523, 661
HspAI GCGC 2 cut(s) 772, 813
Kzo9I GATC 4 cut(s) 235, 282, 449, 552
Lsp1109I GCAGC 1 cut(s) 858
MaeI CTAG 2 cut(s) 440, 615
MaeII ACGT 5 cut(s) 52, 179, 413, 598, 701
MaeIII GTNAC 2 cut(s) 827, 845
MalI GATC 4 cut(s) 237, 284, 451, 554
MbiI CCGCTC 1 cut(s) 132
MboI GATC 4 cut(s) 235, 282, 449, 552
MboII GAAGA 3 cut(s) 36, 333, 676
MflI RGATCY 2 cut(s) 449, 552
MhlI GDGCHC 6 cut(s) 9, 107, 165, 222, 276, 750
MluCI AATT 3 cut(s) 76, 244, 718
MlyI GAGTC 6 cut(s) 112, 146, 409, 619, 775, 884
MmeI TCCRAC 3 cut(s) 180, 428, 533
MroXI GAANNNNTTC 1 cut(s) 644
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 5 cut(s) 307, 550, 712, 793, 832
MspR9I CCNGG 2 cut(s) 191, 713
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 6 cut(s) 225, 291, 392, 545, 772, 815
MwoI GCNNNNNNNGC 3 cut(s) 812, 859, 868
NciI CCSGG 1 cut(s) 713
NdeII GATC 4 cut(s) 235, 282, 449, 552
NlaIII CATG 2 cut(s) 523, 661
NlaIV GGNNCC 3 cut(s) 6, 767, 836
NmuCI GTSAC 2 cut(s) 827, 845
NspI RCATGY 1 cut(s) 661
PaeI GCATGC 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 4 cut(s) 41, 491, 534, 589
PflFI GACNNNGTC 3 cut(s) 121, 326, 476
PinAI ACCGGT 1 cut(s) 831
PkrI GCNGC 3 cut(s) 290, 352, 873
PleI GAGTC 6 cut(s) 112, 146, 408, 619, 775, 884
PmaCI CACGTG 1 cut(s) 599
PmlI CACGTG 1 cut(s) 599
PpsI GAGTC 6 cut(s) 112, 146, 408, 619, 775, 884
Ppu21I YACGTR 1 cut(s) 599
PshAI GACNNNNGTC 1 cut(s) 515
Psp124BI GAGCTC 4 cut(s) 107, 222, 276, 750
Psp6I CCWGG 1 cut(s) 189
PspCI CACGTG 1 cut(s) 599
PspEI GGTNACC 1 cut(s) 827
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 6, 767, 836
PspPI GGNCC 3 cut(s) 202, 464, 547
PspXI VCTCGAGB 1 cut(s) 206
PstI CTGCAG 1 cut(s) 876
PsuI RGATCY 2 cut(s) 449, 552
PsyI GACNNNGTC 3 cut(s) 121, 326, 476
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 3 cut(s) 175, 212, 710
RsaNI GTAC 3 cut(s) 174, 211, 709
Rsr2I CGGWCCG 1 cut(s) 547
RsrII CGGWCCG 1 cut(s) 547
SacI GAGCTC 4 cut(s) 107, 222, 276, 750
SatI GCNGC 3 cut(s) 289, 351, 872
Sau3AI GATC 4 cut(s) 235, 282, 449, 552
Sau96I GGNCC 3 cut(s) 202, 464, 547
SchI GAGTC 6 cut(s) 112, 146, 409, 619, 775, 884
ScrFI CCNGG 2 cut(s) 191, 713
SduI GDGCHC 6 cut(s) 9, 107, 165, 222, 276, 750
SfcI CTRYAG 1 cut(s) 872
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 831
SinI GGWCC 3 cut(s) 202, 464, 547
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SphI GCATGC 1 cut(s) 661
Sse9I AATT 3 cut(s) 76, 244, 718
SspMI CTAG 2 cut(s) 440, 615
SstI GAGCTC 4 cut(s) 107, 222, 276, 750
StyD4I CCNGG 2 cut(s) 189, 711
TaaI ACNGT 2 cut(s) 173, 827
TaiI ACGT 5 cut(s) 55, 182, 416, 601, 704
TaqI TCGA 6 cut(s) 207, 281, 423, 540, 587, 592
TaqII GACCGA 3 cut(s) 446, 452, 634
TasI AATT 3 cut(s) 76, 244, 718
TauI GCSGC 2 cut(s) 291, 353
TfiI GAWTC 4 cut(s) 41, 491, 534, 589
TseFI GTSAC 2 cut(s) 827, 845
TseI GCWGC 1 cut(s) 871
Tsp45I GTSAC 2 cut(s) 827, 845
TspDTI ATGAA 2 cut(s) 526, 653
TspGWI ACGGA 6 cut(s) 111, 565, 683, 696, 740, 833
Tth111I GACNNNGTC 3 cut(s) 121, 326, 476
VpaK11BI GGWCC 3 cut(s) 202, 464, 547
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 614
XceI RCATGY 1 cut(s) 661
XhoI CTCGAG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 2 cut(s) 440, 615
ZraI GACGTC 2 cut(s) 180, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.