pycom17g26790

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014230
Physical Location & Seq
Forward (+)
25080653 .. 25081580
928 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGGACTGGCTTGAATCCCCTAATTCCCACATATTCAAGATCAATGTTCCAGGGGAAGGCAGGAAAGAAAGAGAGAAGGCTCATGCAGCAAAAGACACTGTTTGGCACGTCGCGGAGACGCCGGAGAGGGGGACGGGAAAAGGAGACTTTTCCCGGGAAATCGCATTGCCGGAAAATGTGAAAGTCGATCAGATAAAGGCTCAGGTTGAGAATGGTGTTCTCACCCTTGTTGTCCCAAAAGATACGACCCACCAAACCATCCAAAATGCGAAACATCAATATCACTAG

Protein Analysis

96

Amino Acids

10.73

Weight (kDa)

6.58

Isoelectric Point (pI)

20.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 31 - 86 1.1e-10 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014230)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37670
fragaria_vesca FvH4_1g07080
malus_domestica MD09G1271100.v1.1 MD17G1269200.v1.1
prunus_persica Prupe.3G017400_v2.0.a1
pyrus_communis pycom09g18210 pycom17g26790
rosa_chinensis RchiOBHm_Chr3g0491101
rosa_laevigata RLG00000022863
rosa_multiflora Rmu_sc0005038.1_g000022
rosa_roxburghii Rroxscaffold_6G00393200
rosa_rugosa Rorug03G0246100
rosa_samantha Rh3AG296300 Rh3BG332300 Rh3CG329600 Rh3DG330100
rosa_wichuraiana Rw3G026150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AciI CCGC 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 56, 128
AgsI TTSAA 2 cut(s) 14, 37
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 110, 138
Ama87I CYCGRG 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 86
AsuC2I CCSGG 2 cut(s) 154, 155
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 153
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 2 cut(s) 154, 155
BcoDI GTCTC 2 cut(s) 110, 138
BfaI CTAG 1 cut(s) 286
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 51, 154, 155
BmeT110I CYCGRG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 109
BmrFI CCNGG 3 cut(s) 51, 154, 155
Bpu10I CCTNAGC 1 cut(s) 201
BpuMI CCSGG 2 cut(s) 154, 155
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 50, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 128
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 50, 153
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 56, 128
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 3 cut(s) 122, 154, 170
BslFI GGGAC 2 cut(s) 145, 218
BslI CCNNNNNNNGG 2 cut(s) 56, 128
BsmAI GTCTC 2 cut(s) 110, 138
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 2 cut(s) 145, 218
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 2 cut(s) 39, 187
BspACI CCGC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 50, 153
BssMI GATC 2 cut(s) 39, 187
BssNI GRCGYC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 258
BstFNI CGCG 1 cut(s) 113
BstKTI GATC 2 cut(s) 42, 190
BstMAI GTCTC 2 cut(s) 110, 138
BstMBI GATC 2 cut(s) 39, 187
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 49, 152, 153
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 98
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 96
Cfr9I CCCGGG 1 cut(s) 153
CseI GACGC 1 cut(s) 127
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 10, 80, 200
CviKI_1 RGCY 3 cut(s) 10, 80, 200
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 41, 189
DpnII GATC 2 cut(s) 39, 187
Eco88I CYCGRG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 49
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 1 cut(s) 86
FaiI YATR 2 cut(s) 32, 84
FaqI GGGAC 2 cut(s) 145, 218
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 286
GluI GCNGC 1 cut(s) 87
HapII CCGG 3 cut(s) 122, 154, 170
HgaI GACGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 14
HpaII CCGG 3 cut(s) 122, 154, 170
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 50, 70
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 2 cut(s) 39, 187
LpnPI CCDG 7 cut(s) 36, 46, 63, 135, 167, 183, 188
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 1 cut(s) 286
MaeII ACGT 1 cut(s) 108
MalI GATC 2 cut(s) 41, 189
MboI GATC 2 cut(s) 39, 187
MluCI AATT 1 cut(s) 22
MnlI CCTC 1 cut(s) 120
MspI CCGG 3 cut(s) 122, 154, 170
MspR9I CCNGG 3 cut(s) 51, 154, 155
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 2 cut(s) 154, 155
NdeII GATC 2 cut(s) 39, 187
NlaIII CATG 1 cut(s) 86
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 39, 187
ScrFI CCNGG 3 cut(s) 51, 154, 155
SetI ASST 2 cut(s) 111, 207
SmaI CCCGGG 1 cut(s) 155
Sse9I AATT 1 cut(s) 22
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 286
StyD4I CCNGG 3 cut(s) 49, 152, 153
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 22
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 1 cut(s) 103
TseI GCWGC 1 cut(s) 86
TspMI CCCGGG 1 cut(s) 153
TspRI CASTG 1 cut(s) 103
XmaI CCCGGG 1 cut(s) 153
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.