Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006551

Physical Location & Seq

Genomic Coordinates Reverse (-)

25588447 .. 25588632

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAGGAAGTGTGTGAATCATCACTCAGCAAGGGTGATTGGCAATAGAAATTGGGTTATTCCATTCATTACTGGCTTTATCATATTCATTACCCTCTTTTTCTTAAAAGGGTTTTGGCTTTGGAAGGAGATGGAGATCGGTGACAATGATTGGAGTTTGTCGCTGTGTGGATCGATCCCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

62

Amino Acids

7.16

Weight (kDa)

8.84

Isoelectric Point (pI)

15.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03520 AT1G03520 AT4G03340 AT4G03340
fragaria_vesca	FvH4_6g44880
malus_domestica	MD09G1092300.v1.1 MD17G1082300.v1.1
prunus_persica	Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1
pyrus_communis	pycom17g08040 pycom17g27370
rosa_chinensis	RchiOBHm_Chr2g0162071 RchiOBHm_Chr3g0466861
rosa_laevigata	RLG00000021320
rosa_multiflora	Rmu_sc0005601.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088330
rosa_rugosa	Rorug02G0494400
rosa_samantha	Rh2AG560600 Rh2BG573900 Rh2CG544200 Rh2DG583900
rosa_wichuraiana	Rw2G046430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	169, 178
AlwI	GGATC	2 cut(s)	169, 178
AsuHPI	GGTGA	2 cut(s)	46, 152
BccI	CCATC	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	76, 179
Bse8I	GATNNNNATC	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	76, 179
BshVI	ATCGAT	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	135, 170, 174
BspCNI	CTCAG	1 cut(s)	38
BspDI	ATCGAT	1 cut(s)	173
BspPI	GGATC	2 cut(s)	169, 178
BsrI	ACTGG	2 cut(s)	76, 179
BssMI	GATC	3 cut(s)	135, 170, 174
BstDEI	CTNAG	1 cut(s)	25
BstKTI	GATC	3 cut(s)	138, 173, 177
BstMBI	GATC	3 cut(s)	135, 170, 174
Bsu15I	ATCGAT	1 cut(s)	173
BsuTUI	ATCGAT	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	173
CviJI	RGCY	2 cut(s)	75, 118
CviKI_1	RGCY	2 cut(s)	75, 118
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	3 cut(s)	137, 172, 176
DpnII	GATC	3 cut(s)	135, 170, 174
FaiI	YATR	1 cut(s)	83
HinfI	GANTC	1 cut(s)	16
HphI	GGTGA	2 cut(s)	46, 152
HpyAV	CCTTC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	135, 170, 174
LpnPI	CCDG	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	137, 172, 176
MboI	GATC	3 cut(s)	135, 170, 174
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	104
NdeII	GATC	3 cut(s)	135, 170, 174
NmuCI	GTSAC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	104
Sau3AI	GATC	3 cut(s)	135, 170, 174
SgeI	CNNG	2 cut(s)	42, 84
Sse9I	AATT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	55, 76
TspRI	CASTG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.