Pre-mRNA-splicing factor ATP-dependent RNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47250 AT3G62310 AT3G62310 AT3G62310 |
| fragaria_vesca | FvH4_1g26860 FvH4_1g26860 |
| malus_domestica | MD09G1286000.v1.1 MD17G1278600.v1.1 |
| prunus_persica | Prupe.3G007400_v2.0.a1 |
| pyrus_communis | pycom09g19330 pycom17g27620 pycom17g27630 |
| rosa_chinensis | RchiOBHm_Chr3g0487101 |
| rosa_laevigata | RLG00000023033 |
| rosa_multiflora | Rmu_co8377811.1_g000001 Rmu_ssc0000271.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00395180 |
| rosa_rugosa | Rorug03G0231000 |
| rosa_samantha | Rh3AG279300 Rh3BG315300 Rh3CG313500 Rh3DG310300 |
| rosa_wichuraiana | Rw3G024760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 210, 952 |
| AciI | CCGC | 3 cut(s) | 93, 282, 895 |
| AclWI | GGATC | 8 cut(s) | 172, 536, 995, 1106, 1379, 1392, 1500, 1509 |
| AcsI | RAATTY | 3 cut(s) | 759, 1032, 1302 |
| AcuI | CTGAAG | 2 cut(s) | 321, 438 |
| AfaI | GTAC | 4 cut(s) | 7, 158, 170, 370 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 220, 1473 |
| AjiI | CACGTC | 1 cut(s) | 40 |
| AjnI | CCWGG | 5 cut(s) | 736, 841, 930, 1036, 1231 |
| AluBI | AGCT | 7 cut(s) | 30, 101, 236, 320, 689, 980, 1471 |
| AluI | AGCT | 7 cut(s) | 30, 101, 236, 320, 689, 980, 1471 |
| Alw21I | GWGCWC | 2 cut(s) | 1198, 1417 |
| Alw26I | GTCTC | 3 cut(s) | 258, 830, 1394 |
| Alw44I | GTGCAC | 1 cut(s) | 1194 |
| AlwI | GGATC | 8 cut(s) | 172, 536, 995, 1106, 1379, 1392, 1500, 1509 |
| AoxI | GGCC | 1 cut(s) | 243 |
| ApaLI | GTGCAC | 1 cut(s) | 1194 |
| ApeKI | GCWGC | 7 cut(s) | 90, 101, 104, 389, 477, 800, 985 |
| ApoI | RAATTY | 3 cut(s) | 759, 1032, 1302 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 696 |
| AspLEI | GCGC | 1 cut(s) | 721 |
| AspS9I | GGNCC | 2 cut(s) | 144, 938 |
| AsuC2I | CCSGG | 2 cut(s) | 148, 1116 |
| AsuHPI | GGTGA | 4 cut(s) | 37, 281, 499, 938 |
| AsuII | TTCGAA | 1 cut(s) | 808 |
| AvaII | GGWCC | 2 cut(s) | 144, 938 |
| BaeGI | GKGCMC | 1 cut(s) | 1198 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1277, 1310 |
| BamHI | GGATCC | 1 cut(s) | 1384 |
| BanI | GGYRCC | 2 cut(s) | 210, 952 |
| BbsI | GAAGAC | 2 cut(s) | 200, 477 |
| Bbv12I | GWGCWC | 2 cut(s) | 1198, 1417 |
| BbvI | GCAGC | 7 cut(s) | 88, 91, 102, 376, 489, 812, 997 |
| BccI | CCATC | 5 cut(s) | 65, 352, 418, 506, 1085 |
| BceAI | ACGGC | 2 cut(s) | 103, 139 |
| BciT130I | CCWGG | 5 cut(s) | 738, 843, 932, 1038, 1233 |
| BciVI | GTATCC | 2 cut(s) | 412, 1305 |
| BclI | TGATCA | 1 cut(s) | 132 |
| BcnI | CCSGG | 2 cut(s) | 148, 1116 |
| BcoDI | GTCTC | 3 cut(s) | 258, 830, 1394 |
| BfaI | CTAG | 3 cut(s) | 1349, 1418, 1472 |
| BfmI | CTRYAG | 1 cut(s) | 475 |
| BfuI | GTATCC | 2 cut(s) | 412, 1305 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 208 |
| BisI | GCNGC | 8 cut(s) | 91, 102, 105, 390, 478, 801, 895, 986 |
| BlsI | GCNGC | 8 cut(s) | 92, 103, 106, 391, 479, 802, 896, 987 |
| Bme1390I | CCNGG | 7 cut(s) | 148, 738, 843, 932, 1038, 1116, 1233 |
| Bme18I | GGWCC | 2 cut(s) | 144, 938 |
| BmgBI | CACGTC | 1 cut(s) | 40 |
| BmgT120I | GGNCC | 2 cut(s) | 144, 938 |
| BmiI | GGNNCC | 4 cut(s) | 212, 777, 954, 1386 |
| BmrFI | CCNGG | 7 cut(s) | 148, 738, 843, 932, 1038, 1116, 1233 |
| BmsI | GCATC | 3 cut(s) | 468, 877, 1513 |
| BpiI | GAAGAC | 2 cut(s) | 200, 477 |
| BpmI | CTGGAG | 1 cut(s) | 960 |
| Bpu14I | TTCGAA | 1 cut(s) | 808 |
| BpuEI | CTTGAG | 1 cut(s) | 203 |
| BpuMI | CCSGG | 2 cut(s) | 148, 1116 |
| Bsa29I | ATCGAT | 1 cut(s) | 1504 |
| BsaAI | YACGTR | 1 cut(s) | 380 |
| BsaI | GGTCTC | 1 cut(s) | 830 |
| BsaJI | CCNNGG | 3 cut(s) | 771, 841, 1185 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 432, 462, 958, 988 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 220, 1473 |
| Bse1I | ACTGG | 2 cut(s) | 250, 752 |
| Bse3DI | GCAATG | 2 cut(s) | 399, 540 |
| BseBI | CCWGG | 5 cut(s) | 738, 843, 932, 1038, 1233 |
| BseCI | ATCGAT | 1 cut(s) | 1504 |
| BseDI | CCNNGG | 3 cut(s) | 771, 841, 1185 |
| BseGI | GGATG | 4 cut(s) | 433, 459, 748, 1453 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 220, 1473 |
| BseMI | GCAATG | 2 cut(s) | 399, 540 |
| BseMII | CTCAG | 6 cut(s) | 176, 308, 1241, 1248, 1389, 1524 |
| BseNI | ACTGG | 2 cut(s) | 250, 752 |
| BseRI | GAGGAG | 6 cut(s) | 111, 236, 887, 890, 999, 1002 |
| BseSI | GKGCMC | 1 cut(s) | 1198 |
| BseXI | GCAGC | 7 cut(s) | 88, 91, 102, 376, 489, 812, 997 |
| BsgI | GTGCAG | 1 cut(s) | 839 |
| BshFI | GGCC | 1 cut(s) | 245 |
| BshNI | GGYRCC | 2 cut(s) | 210, 952 |
| BshVI | ATCGAT | 1 cut(s) | 1504 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1198, 1417 |
| BsiSI | CCGG | 2 cut(s) | 147, 1116 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 220, 1473 |
| BsmAI | GTCTC | 3 cut(s) | 258, 830, 1394 |
| BsmI | GAATGC | 1 cut(s) | 522 |
| BsnI | GGCC | 1 cut(s) | 245 |
| Bso31I | GGTCTC | 1 cut(s) | 830 |
| Bsp119I | TTCGAA | 1 cut(s) | 808 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1198, 1417 |
| BspACI | CCGC | 3 cut(s) | 93, 282, 895 |
| BspANI | GGCC | 1 cut(s) | 245 |
| BspCNI | CTCAG | 6 cut(s) | 175, 307, 1240, 1249, 1390, 1523 |
| BspDI | ATCGAT | 1 cut(s) | 1504 |
| BspHI | TCATGA | 1 cut(s) | 726 |
| BspLI | GGNNCC | 4 cut(s) | 212, 777, 954, 1386 |
| BspMAI | CTGCAG | 1 cut(s) | 479 |
| BspPI | GGATC | 8 cut(s) | 172, 536, 995, 1106, 1379, 1392, 1500, 1509 |
| BspT104I | TTCGAA | 1 cut(s) | 808 |
| BspT107I | GGYRCC | 2 cut(s) | 210, 952 |
| BspTNI | GGTCTC | 1 cut(s) | 830 |
| BsrDI | GCAATG | 2 cut(s) | 399, 540 |
| BsrI | ACTGG | 2 cut(s) | 250, 752 |
| BssECI | CCNNGG | 3 cut(s) | 771, 841, 1185 |
| BssT1I | CCWWGG | 1 cut(s) | 1185 |
| Bst2UI | CCWGG | 5 cut(s) | 738, 843, 932, 1038, 1233 |
| Bst4CI | ACNGT | 4 cut(s) | 128, 493, 814, 1330 |
| Bst6I | CTCTTC | 4 cut(s) | 11, 182, 414, 438 |
| BstBAI | YACGTR | 1 cut(s) | 380 |
| BstBI | TTCGAA | 1 cut(s) | 808 |
| BstC8I | GCNNGC | 3 cut(s) | 234, 247, 892 |
| BstDEI | CTNAG | 6 cut(s) | 162, 294, 1227, 1257, 1398, 1510 |
| BstEII | GGTNACC | 1 cut(s) | 926 |
| BstF5I | GGATG | 4 cut(s) | 433, 459, 748, 1453 |
| BstHHI | GCGC | 1 cut(s) | 721 |
| BstMAI | GTCTC | 3 cut(s) | 258, 830, 1394 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 208, 242 |
| BstNI | CCWGG | 5 cut(s) | 738, 843, 932, 1038, 1233 |
| BstNSI | RCATGY | 1 cut(s) | 894 |
| BstPI | GGTNACC | 1 cut(s) | 926 |
| BstSCI | CCNGG | 7 cut(s) | 146, 736, 841, 930, 1036, 1114, 1231 |
| BstSFI | CTRYAG | 1 cut(s) | 475 |
| BstSLI | GKGCMC | 1 cut(s) | 1198 |
| BstV1I | GCAGC | 7 cut(s) | 88, 91, 102, 376, 489, 812, 997 |
| BstV2I | GAAGAC | 2 cut(s) | 200, 477 |
| BstX2I | RGATCY | 2 cut(s) | 177, 1384 |
| BstYI | RGATCY | 2 cut(s) | 177, 1384 |
| Bsu15I | ATCGAT | 1 cut(s) | 1504 |
| BsuI | GTATCC | 2 cut(s) | 412, 1305 |
| BsuRI | GGCC | 1 cut(s) | 245 |
| BsuTUI | ATCGAT | 1 cut(s) | 1504 |
| BtrI | CACGTC | 1 cut(s) | 40 |
| BtsCI | GGATG | 4 cut(s) | 433, 459, 748, 1453 |
| BtsI | GCAGTG | 1 cut(s) | 487 |
| BtsIMutI | CAGTG | 3 cut(s) | 487, 718, 759 |
| Cac8I | GCNNGC | 3 cut(s) | 234, 247, 892 |
| CciI | TCATGA | 1 cut(s) | 726 |
| CfoI | GCGC | 1 cut(s) | 721 |
| Cfr13I | GGNCC | 2 cut(s) | 144, 938 |
| ClaI | ATCGAT | 1 cut(s) | 1504 |
| CsiI | ACCWGGT | 1 cut(s) | 930 |
| Csp6I | GTAC | 4 cut(s) | 6, 157, 169, 369 |
| CviAII | CATG | 2 cut(s) | 727, 891 |
| CviQI | GTAC | 4 cut(s) | 6, 157, 169, 369 |
| DdeI | CTNAG | 6 cut(s) | 162, 294, 1227, 1257, 1398, 1510 |
| Eam1104I | CTCTTC | 4 cut(s) | 11, 182, 414, 438 |
| EarI | CTCTTC | 4 cut(s) | 11, 182, 414, 438 |
| Eco130I | CCWWGG | 1 cut(s) | 1185 |
| Eco31I | GGTCTC | 1 cut(s) | 830 |
| Eco47I | GGWCC | 2 cut(s) | 144, 938 |
| Eco57I | CTGAAG | 2 cut(s) | 321, 438 |
| Eco91I | GGTNACC | 1 cut(s) | 926 |
| EcoO65I | GGTNACC | 1 cut(s) | 926 |
| EcoRI | GAATTC | 1 cut(s) | 1032 |
| EcoRII | CCWGG | 5 cut(s) | 736, 841, 930, 1036, 1231 |
| EcoT14I | CCWWGG | 1 cut(s) | 1185 |
| EcoT22I | ATGCAT | 1 cut(s) | 892 |
| ErhI | CCWWGG | 1 cut(s) | 1185 |
| FaeI | CATG | 2 cut(s) | 730, 894 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 14, 46 |
| FatI | CATG | 2 cut(s) | 726, 890 |
| FauNDI | CATATG | 1 cut(s) | 828 |
| FbaI | TGATCA | 1 cut(s) | 132 |
| Fnu4HI | GCNGC | 8 cut(s) | 91, 102, 105, 390, 478, 801, 895, 986 |
| FokI | GGATG | 4 cut(s) | 440, 446, 735, 1460 |
| Fsp4HI | GCNGC | 8 cut(s) | 91, 102, 105, 390, 478, 801, 895, 986 |
| FspBI | CTAG | 3 cut(s) | 1349, 1418, 1472 |
| GlaI | GCGC | 1 cut(s) | 720 |
| GluI | GCNGC | 8 cut(s) | 91, 102, 105, 390, 478, 801, 895, 986 |
| GsuI | CTGGAG | 1 cut(s) | 960 |
| HaeIII | GGCC | 1 cut(s) | 245 |
| HapII | CCGG | 2 cut(s) | 147, 1116 |
| HhaI | GCGC | 1 cut(s) | 721 |
| Hin1II | CATG | 2 cut(s) | 730, 894 |
| Hin6I | GCGC | 1 cut(s) | 719 |
| HinP1I | GCGC | 1 cut(s) | 719 |
| HincII | GTYRAC | 1 cut(s) | 1059 |
| HindII | GTYRAC | 1 cut(s) | 1059 |
| HindIII | AAGCTT | 1 cut(s) | 234 |
| HinfI | GANTC | 5 cut(s) | 298, 332, 805, 823, 1160 |
| HpaII | CCGG | 2 cut(s) | 147, 1116 |
| HphI | GGTGA | 4 cut(s) | 37, 281, 499, 938 |
| Hpy166II | GTNNAC | 5 cut(s) | 46, 144, 369, 1059, 1196 |
| Hpy188III | TCNNGA | 7 cut(s) | 575, 587, 727, 794, 1298, 1397, 1426 |
| Hpy8I | GTNNAC | 5 cut(s) | 46, 144, 369, 1059, 1196 |
| Hpy99I | CGWCG | 2 cut(s) | 41, 411 |
| HpyAV | CCTTC | 7 cut(s) | 16, 622, 652, 735, 1019, 1035, 1448 |
| HpyCH4III | ACNGT | 4 cut(s) | 128, 493, 814, 1330 |
| HpyCH4IV | ACGT | 3 cut(s) | 39, 379, 1292 |
| HpyCH4V | TGCA | 9 cut(s) | 232, 392, 477, 820, 890, 985, 1070, 1196, 1322 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 208, 242 |
| HpyF3I | CTNAG | 6 cut(s) | 162, 294, 1227, 1257, 1398, 1510 |
| HpySE526I | ACGT | 3 cut(s) | 39, 379, 1292 |
| Hsp92II | CATG | 2 cut(s) | 730, 894 |
| HspAI | GCGC | 1 cut(s) | 719 |
| Ksp22I | TGATCA | 1 cut(s) | 132 |
| LmnI | GCTCC | 4 cut(s) | 98, 1012, 1399, 1439 |
| Lsp1109I | GCAGC | 7 cut(s) | 88, 91, 102, 376, 489, 812, 997 |
| LweI | GCATC | 3 cut(s) | 468, 877, 1513 |
| MabI | ACCWGGT | 1 cut(s) | 930 |
| MaeI | CTAG | 3 cut(s) | 1349, 1418, 1472 |
| MaeII | ACGT | 3 cut(s) | 39, 379, 1292 |
| MaeIII | GTNAC | 3 cut(s) | 430, 926, 1457 |
| MflI | RGATCY | 2 cut(s) | 177, 1384 |
| MhlI | GDGCHC | 2 cut(s) | 1198, 1417 |
| MluCI | AATT | 9 cut(s) | 305, 570, 759, 900, 1032, 1095, 1179, 1302, 1429 |
| MmeI | TCCRAC | 1 cut(s) | 1479 |
| Mph1103I | ATGCAT | 1 cut(s) | 892 |
| MroXI | GAANNNNTTC | 1 cut(s) | 696 |
| MseI | TTAA | 2 cut(s) | 524, 903 |
| MslI | CAYNNNNRTG | 1 cut(s) | 831 |
| MspA1I | CMGCKG | 1 cut(s) | 93 |
| MspI | CCGG | 2 cut(s) | 147, 1116 |
| MspR9I | CCNGG | 7 cut(s) | 148, 738, 843, 932, 1038, 1116, 1233 |
| Mva1269I | GAATGC | 1 cut(s) | 522 |
| MvaI | CCWGG | 5 cut(s) | 738, 843, 932, 1038, 1233 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 208, 242 |
| NciI | CCSGG | 2 cut(s) | 148, 1116 |
| NdeI | CATATG | 1 cut(s) | 828 |
| NlaIII | CATG | 2 cut(s) | 730, 894 |
| NlaIV | GGNNCC | 4 cut(s) | 212, 777, 954, 1386 |
| NmuCI | GTSAC | 1 cut(s) | 926 |
| NsiI | ATGCAT | 1 cut(s) | 892 |
| NspI | RCATGY | 1 cut(s) | 894 |
| NspV | TTCGAA | 1 cut(s) | 808 |
| PaeI | GCATGC | 1 cut(s) | 894 |
| PagI | TCATGA | 1 cut(s) | 726 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PctI | GAATGC | 1 cut(s) | 522 |
| PdmI | GAANNNNTTC | 1 cut(s) | 696 |
| PfeI | GAWTC | 5 cut(s) | 298, 332, 805, 823, 1160 |
| PfoI | TCCNGGA | 3 cut(s) | 736, 1036, 1114 |
| PkrI | GCNGC | 8 cut(s) | 92, 103, 106, 391, 479, 802, 896, 987 |
| Ppu21I | YACGTR | 1 cut(s) | 380 |
| Psp6I | CCWGG | 5 cut(s) | 736, 841, 930, 1036, 1231 |
| PspEI | GGTNACC | 1 cut(s) | 926 |
| PspGI | CCWGG | 5 cut(s) | 736, 841, 930, 1036, 1231 |
| PspN4I | GGNNCC | 4 cut(s) | 212, 777, 954, 1386 |
| PspPI | GGNCC | 2 cut(s) | 144, 938 |
| PstI | CTGCAG | 1 cut(s) | 479 |
| PsuI | RGATCY | 2 cut(s) | 177, 1384 |
| RsaI | GTAC | 4 cut(s) | 7, 158, 170, 370 |
| RsaNI | GTAC | 4 cut(s) | 6, 157, 169, 369 |
| RseI | CAYNNNNRTG | 1 cut(s) | 831 |
| SaqAI | TTAA | 2 cut(s) | 524, 903 |
| SatI | GCNGC | 8 cut(s) | 91, 102, 105, 390, 478, 801, 895, 986 |
| Sau96I | GGNCC | 2 cut(s) | 144, 938 |
| ScrFI | CCNGG | 7 cut(s) | 148, 738, 843, 932, 1038, 1116, 1233 |
| SduI | GDGCHC | 2 cut(s) | 1198, 1417 |
| SexAI | ACCWGGT | 1 cut(s) | 930 |
| SfaNI | GCATC | 3 cut(s) | 468, 877, 1513 |
| SfcI | CTRYAG | 1 cut(s) | 475 |
| SfuI | TTCGAA | 1 cut(s) | 808 |
| SinI | GGWCC | 2 cut(s) | 144, 938 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 831 |
| SmlI | CTYRAG | 1 cut(s) | 182 |
| SmoI | CTYRAG | 1 cut(s) | 182 |
| SphI | GCATGC | 1 cut(s) | 894 |
| Sse9I | AATT | 9 cut(s) | 305, 570, 759, 900, 1032, 1095, 1179, 1302, 1429 |
| SsiI | CCGC | 3 cut(s) | 93, 282, 895 |
| SspI | AATATT | 2 cut(s) | 996, 1066 |
| SspMI | CTAG | 3 cut(s) | 1349, 1418, 1472 |
| StyD4I | CCNGG | 7 cut(s) | 146, 736, 841, 930, 1036, 1114, 1231 |
| StyI | CCWWGG | 1 cut(s) | 1185 |
| TaaI | ACNGT | 4 cut(s) | 128, 493, 814, 1330 |
| TaiI | ACGT | 3 cut(s) | 42, 382, 1295 |
| TaqI | TCGA | 4 cut(s) | 36, 83, 808, 1504 |
| TasI | AATT | 9 cut(s) | 305, 570, 759, 900, 1032, 1095, 1179, 1302, 1429 |
| TauI | GCSGC | 1 cut(s) | 897 |
| TfiI | GAWTC | 5 cut(s) | 298, 332, 805, 823, 1160 |
| Tru1I | TTAA | 2 cut(s) | 524, 903 |
| Tru9I | TTAA | 2 cut(s) | 524, 903 |
| TscAI | CASTG | 3 cut(s) | 487, 718, 759 |
| TseFI | GTSAC | 1 cut(s) | 926 |
| TseI | GCWGC | 7 cut(s) | 90, 101, 104, 389, 477, 800, 985 |
| Tsp45I | GTSAC | 1 cut(s) | 926 |
| TspDTI | ATGAA | 7 cut(s) | 89, 137, 737, 743, 815, 1358, 1467 |
| TspGWI | ACGGA | 2 cut(s) | 23, 452 |
| TspRI | CASTG | 3 cut(s) | 487, 718, 759 |
| VneI | GTGCAC | 1 cut(s) | 1194 |
| VpaK11BI | GGWCC | 2 cut(s) | 144, 938 |
| XapI | RAATTY | 3 cut(s) | 759, 1032, 1302 |
| XceI | RCATGY | 1 cut(s) | 894 |
| XmnI | GAANNNNTTC | 1 cut(s) | 696 |
| XspI | CTAG | 3 cut(s) | 1349, 1418, 1472 |
| Zsp2I | ATGCAT | 1 cut(s) | 892 |