pycom17g27620

Pre-mRNA-splicing factor ATP-dependent RNA

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
25764300 .. 25766864
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g27620.2

Sequence Viewer

Length: 1542 bp
ATGGGTACGGAGAGGAAGAGGAAGGTGAGCTTGTTCGACGTGGTGGACGAGGCTTCCATCACATCGGCGAAGATGAACAAATCGAACGGCAGCGGAGGAGCTGCTGCCAACCAAAACGCTATGAACAGTCTGATCAATCGGTGGACCGGGAAGCCGTACTCTCAGAGGTACTATGAGATCCTTGAGAAGAGGAAGACTTTGCCTGTTTGGCACCAGAAAGAGGAGTTCTTGCAAGCTTTCAAGGCCAGCCAGTCTCTCATTTTGGTCGGTGAAACGGGTAGCGGTAAAACCACTCAGATTCCTCAATTTGTTTTGGAAGCTGTCCATTCAGAATCTTCAGATAAACGCAAGAAGATGATGGTTGCGTGTACCCAACCACGTAGAGTGGCTGCAATGTCAGTATCCCGTCGTGTTGCTGAAGAGATGGATGTAACCATTGGAGAAGAGGTTGGTTATAGCATCCGTTTTGAAGACTGCAGCAGTGCCAGAACTGTGTTGAAGTATCTCACCGATGGAATGCTTTTAAGAGAAGCAATGACTGATCCACTTTTAGAAAGATACAGCGTGATAATTCTTGATGAGGCTCACGAAAGAACTTTAGCAACAGATGTTCTATTTGGGCTTTTGAAGGAAGTGTTGAGAAACAGACCTGATTTGAAGGTGGTTGTGATGAGTGCTACACTTGAAGCTGAAAAGTTTCAGGGTTATTTCAGTGGTGCGCCACTCATGAAAGTTCCTGGAAGGCTTCATCCAGTGGAAATTTTTTACACCGAGGAACCTGAAAGGGATTATCTGGAAGCAGCGATTCGAACAGTTGTGCAGATTCATATGTATGAGACCCCAGGAGATATACTTGTTTTTCTAACGGGAGAGGAGGAGATAGAAGATGCATGCCGCAAAATTAACAAGGAAATCGGAAATCTGGGTGACCAGGTTGGTCCTGTGAAAGTGGTGCCTCTGTATTCAACTCTACCTCCAGCTATGCAGCAGAAAATATTTGATCCTGCTCCTCCTCCCATAAAAGAAGGTGGAATTCCTGGAAGGAAGATTGTGGTGTCAACAAATATTGCAGAAACTTCTCTGACTATTGATGGAATTGTTTATGTTATTGATCCCGGATTTGCTAAACAAAAAGTCTATAACCCAAGAGTGCGTGTTGAATCCTTGTTGGTATCTCCAATTTCCAAGGCAAGTGCACATCAGAGGTCAGGTCGTGCTGGAAGAACTCAGCCAGGAAAATGTTTCAGACTTTATACTGAGAGAAGTTTCAATAATGATCTTCAACCACAAACGTATCCAGAAATTTTGAGATCAAACCTTGCAAATACAGTTCTTACTTTGAAGAAACTAGGAATAGATGATCTCGTTCATTTTGATTTTATGGATCCCCCTGCTCCTGAGACATTGATGAGAGCACTAGAGGTCTTGAATTATTTGGGAGCATTGGATGATGAAGGTAACTTGACCAAGCTAGGGGAGATTATGAGTGAGTTCCCGTTGGATCGATCCTCAGATGTCAAAGATGCTGGTAGTCAGCCCTGA

Protein Analysis

514

Amino Acids

57.22

Weight (kDa)

5.97

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 210, 952
AciI CCGC 3 cut(s) 93, 282, 895
AclWI GGATC 8 cut(s) 172, 536, 995, 1106, 1379, 1392, 1500, 1509
AcsI RAATTY 3 cut(s) 759, 1032, 1302
AcuI CTGAAG 2 cut(s) 321, 438
AfaI GTAC 4 cut(s) 7, 158, 170, 370
AfiI CCNNNNNNNGG 2 cut(s) 220, 1473
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 5 cut(s) 736, 841, 930, 1036, 1231
AluBI AGCT 7 cut(s) 30, 101, 236, 320, 689, 980, 1471
AluI AGCT 7 cut(s) 30, 101, 236, 320, 689, 980, 1471
Alw21I GWGCWC 2 cut(s) 1198, 1417
Alw26I GTCTC 3 cut(s) 258, 830, 1394
Alw44I GTGCAC 1 cut(s) 1194
AlwI GGATC 8 cut(s) 172, 536, 995, 1106, 1379, 1392, 1500, 1509
AoxI GGCC 1 cut(s) 243
ApaLI GTGCAC 1 cut(s) 1194
ApeKI GCWGC 7 cut(s) 90, 101, 104, 389, 477, 800, 985
ApoI RAATTY 3 cut(s) 759, 1032, 1302
Asp700I GAANNNNTTC 1 cut(s) 696
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 144, 938
AsuC2I CCSGG 2 cut(s) 148, 1116
AsuHPI GGTGA 4 cut(s) 37, 281, 499, 938
AsuII TTCGAA 1 cut(s) 808
AvaII GGWCC 2 cut(s) 144, 938
BaeGI GKGCMC 1 cut(s) 1198
BaeI ACNNNNGTAYC 2 cut(s) 1277, 1310
BamHI GGATCC 1 cut(s) 1384
BanI GGYRCC 2 cut(s) 210, 952
BbsI GAAGAC 2 cut(s) 200, 477
Bbv12I GWGCWC 2 cut(s) 1198, 1417
BbvI GCAGC 7 cut(s) 88, 91, 102, 376, 489, 812, 997
BccI CCATC 5 cut(s) 65, 352, 418, 506, 1085
BceAI ACGGC 2 cut(s) 103, 139
BciT130I CCWGG 5 cut(s) 738, 843, 932, 1038, 1233
BciVI GTATCC 2 cut(s) 412, 1305
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 2 cut(s) 148, 1116
BcoDI GTCTC 3 cut(s) 258, 830, 1394
BfaI CTAG 3 cut(s) 1349, 1418, 1472
BfmI CTRYAG 1 cut(s) 475
BfuI GTATCC 2 cut(s) 412, 1305
BglI GCCNNNNNGGC 1 cut(s) 208
BisI GCNGC 8 cut(s) 91, 102, 105, 390, 478, 801, 895, 986
BlsI GCNGC 8 cut(s) 92, 103, 106, 391, 479, 802, 896, 987
Bme1390I CCNGG 7 cut(s) 148, 738, 843, 932, 1038, 1116, 1233
Bme18I GGWCC 2 cut(s) 144, 938
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 144, 938
BmiI GGNNCC 4 cut(s) 212, 777, 954, 1386
BmrFI CCNGG 7 cut(s) 148, 738, 843, 932, 1038, 1116, 1233
BmsI GCATC 3 cut(s) 468, 877, 1513
BpiI GAAGAC 2 cut(s) 200, 477
BpmI CTGGAG 1 cut(s) 960
Bpu14I TTCGAA 1 cut(s) 808
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 2 cut(s) 148, 1116
Bsa29I ATCGAT 1 cut(s) 1504
BsaAI YACGTR 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 3 cut(s) 771, 841, 1185
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 958, 988
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 1473
Bse1I ACTGG 2 cut(s) 250, 752
Bse3DI GCAATG 2 cut(s) 399, 540
BseBI CCWGG 5 cut(s) 738, 843, 932, 1038, 1233
BseCI ATCGAT 1 cut(s) 1504
BseDI CCNNGG 3 cut(s) 771, 841, 1185
BseGI GGATG 4 cut(s) 433, 459, 748, 1453
BseLI CCNNNNNNNGG 2 cut(s) 220, 1473
BseMI GCAATG 2 cut(s) 399, 540
BseMII CTCAG 6 cut(s) 176, 308, 1241, 1248, 1389, 1524
BseNI ACTGG 2 cut(s) 250, 752
BseRI GAGGAG 6 cut(s) 111, 236, 887, 890, 999, 1002
BseSI GKGCMC 1 cut(s) 1198
BseXI GCAGC 7 cut(s) 88, 91, 102, 376, 489, 812, 997
BsgI GTGCAG 1 cut(s) 839
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 2 cut(s) 210, 952
BshVI ATCGAT 1 cut(s) 1504
BsiHKAI GWGCWC 2 cut(s) 1198, 1417
BsiSI CCGG 2 cut(s) 147, 1116
BslI CCNNNNNNNGG 2 cut(s) 220, 1473
BsmAI GTCTC 3 cut(s) 258, 830, 1394
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 830
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 2 cut(s) 1198, 1417
BspACI CCGC 3 cut(s) 93, 282, 895
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 6 cut(s) 175, 307, 1240, 1249, 1390, 1523
BspDI ATCGAT 1 cut(s) 1504
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 4 cut(s) 212, 777, 954, 1386
BspMAI CTGCAG 1 cut(s) 479
BspPI GGATC 8 cut(s) 172, 536, 995, 1106, 1379, 1392, 1500, 1509
BspT104I TTCGAA 1 cut(s) 808
BspT107I GGYRCC 2 cut(s) 210, 952
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 2 cut(s) 399, 540
BsrI ACTGG 2 cut(s) 250, 752
BssECI CCNNGG 3 cut(s) 771, 841, 1185
BssT1I CCWWGG 1 cut(s) 1185
Bst2UI CCWGG 5 cut(s) 738, 843, 932, 1038, 1233
Bst4CI ACNGT 4 cut(s) 128, 493, 814, 1330
Bst6I CTCTTC 4 cut(s) 11, 182, 414, 438
BstBAI YACGTR 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 808
BstC8I GCNNGC 3 cut(s) 234, 247, 892
BstDEI CTNAG 6 cut(s) 162, 294, 1227, 1257, 1398, 1510
BstEII GGTNACC 1 cut(s) 926
BstF5I GGATG 4 cut(s) 433, 459, 748, 1453
BstHHI GCGC 1 cut(s) 721
BstMAI GTCTC 3 cut(s) 258, 830, 1394
BstMWI GCNNNNNNNGC 2 cut(s) 208, 242
BstNI CCWGG 5 cut(s) 738, 843, 932, 1038, 1233
BstNSI RCATGY 1 cut(s) 894
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 7 cut(s) 146, 736, 841, 930, 1036, 1114, 1231
BstSFI CTRYAG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 1198
BstV1I GCAGC 7 cut(s) 88, 91, 102, 376, 489, 812, 997
BstV2I GAAGAC 2 cut(s) 200, 477
BstX2I RGATCY 2 cut(s) 177, 1384
BstYI RGATCY 2 cut(s) 177, 1384
Bsu15I ATCGAT 1 cut(s) 1504
BsuI GTATCC 2 cut(s) 412, 1305
BsuRI GGCC 1 cut(s) 245
BsuTUI ATCGAT 1 cut(s) 1504
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 4 cut(s) 433, 459, 748, 1453
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 487, 718, 759
Cac8I GCNNGC 3 cut(s) 234, 247, 892
CciI TCATGA 1 cut(s) 726
CfoI GCGC 1 cut(s) 721
Cfr13I GGNCC 2 cut(s) 144, 938
ClaI ATCGAT 1 cut(s) 1504
CsiI ACCWGGT 1 cut(s) 930
Csp6I GTAC 4 cut(s) 6, 157, 169, 369
CviAII CATG 2 cut(s) 727, 891
CviQI GTAC 4 cut(s) 6, 157, 169, 369
DdeI CTNAG 6 cut(s) 162, 294, 1227, 1257, 1398, 1510
Eam1104I CTCTTC 4 cut(s) 11, 182, 414, 438
EarI CTCTTC 4 cut(s) 11, 182, 414, 438
Eco130I CCWWGG 1 cut(s) 1185
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 144, 938
Eco57I CTGAAG 2 cut(s) 321, 438
Eco91I GGTNACC 1 cut(s) 926
EcoO65I GGTNACC 1 cut(s) 926
EcoRI GAATTC 1 cut(s) 1032
EcoRII CCWGG 5 cut(s) 736, 841, 930, 1036, 1231
EcoT14I CCWWGG 1 cut(s) 1185
EcoT22I ATGCAT 1 cut(s) 892
ErhI CCWWGG 1 cut(s) 1185
FaeI CATG 2 cut(s) 730, 894
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 2 cut(s) 726, 890
FauNDI CATATG 1 cut(s) 828
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 8 cut(s) 91, 102, 105, 390, 478, 801, 895, 986
FokI GGATG 4 cut(s) 440, 446, 735, 1460
Fsp4HI GCNGC 8 cut(s) 91, 102, 105, 390, 478, 801, 895, 986
FspBI CTAG 3 cut(s) 1349, 1418, 1472
GlaI GCGC 1 cut(s) 720
GluI GCNGC 8 cut(s) 91, 102, 105, 390, 478, 801, 895, 986
GsuI CTGGAG 1 cut(s) 960
HaeIII GGCC 1 cut(s) 245
HapII CCGG 2 cut(s) 147, 1116
HhaI GCGC 1 cut(s) 721
Hin1II CATG 2 cut(s) 730, 894
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HincII GTYRAC 1 cut(s) 1059
HindII GTYRAC 1 cut(s) 1059
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 5 cut(s) 298, 332, 805, 823, 1160
HpaII CCGG 2 cut(s) 147, 1116
HphI GGTGA 4 cut(s) 37, 281, 499, 938
Hpy166II GTNNAC 5 cut(s) 46, 144, 369, 1059, 1196
Hpy188III TCNNGA 7 cut(s) 575, 587, 727, 794, 1298, 1397, 1426
Hpy8I GTNNAC 5 cut(s) 46, 144, 369, 1059, 1196
Hpy99I CGWCG 2 cut(s) 41, 411
HpyAV CCTTC 7 cut(s) 16, 622, 652, 735, 1019, 1035, 1448
HpyCH4III ACNGT 4 cut(s) 128, 493, 814, 1330
HpyCH4IV ACGT 3 cut(s) 39, 379, 1292
HpyCH4V TGCA 9 cut(s) 232, 392, 477, 820, 890, 985, 1070, 1196, 1322
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 242
HpyF3I CTNAG 6 cut(s) 162, 294, 1227, 1257, 1398, 1510
HpySE526I ACGT 3 cut(s) 39, 379, 1292
Hsp92II CATG 2 cut(s) 730, 894
HspAI GCGC 1 cut(s) 719
Ksp22I TGATCA 1 cut(s) 132
LmnI GCTCC 4 cut(s) 98, 1012, 1399, 1439
Lsp1109I GCAGC 7 cut(s) 88, 91, 102, 376, 489, 812, 997
LweI GCATC 3 cut(s) 468, 877, 1513
MabI ACCWGGT 1 cut(s) 930
MaeI CTAG 3 cut(s) 1349, 1418, 1472
MaeII ACGT 3 cut(s) 39, 379, 1292
MaeIII GTNAC 3 cut(s) 430, 926, 1457
MflI RGATCY 2 cut(s) 177, 1384
MhlI GDGCHC 2 cut(s) 1198, 1417
MluCI AATT 9 cut(s) 305, 570, 759, 900, 1032, 1095, 1179, 1302, 1429
MmeI TCCRAC 1 cut(s) 1479
Mph1103I ATGCAT 1 cut(s) 892
MroXI GAANNNNTTC 1 cut(s) 696
MseI TTAA 2 cut(s) 524, 903
MslI CAYNNNNRTG 1 cut(s) 831
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 2 cut(s) 147, 1116
MspR9I CCNGG 7 cut(s) 148, 738, 843, 932, 1038, 1116, 1233
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 5 cut(s) 738, 843, 932, 1038, 1233
MwoI GCNNNNNNNGC 2 cut(s) 208, 242
NciI CCSGG 2 cut(s) 148, 1116
NdeI CATATG 1 cut(s) 828
NlaIII CATG 2 cut(s) 730, 894
NlaIV GGNNCC 4 cut(s) 212, 777, 954, 1386
NmuCI GTSAC 1 cut(s) 926
NsiI ATGCAT 1 cut(s) 892
NspI RCATGY 1 cut(s) 894
NspV TTCGAA 1 cut(s) 808
PaeI GCATGC 1 cut(s) 894
PagI TCATGA 1 cut(s) 726
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 5 cut(s) 298, 332, 805, 823, 1160
PfoI TCCNGGA 3 cut(s) 736, 1036, 1114
PkrI GCNGC 8 cut(s) 92, 103, 106, 391, 479, 802, 896, 987
Ppu21I YACGTR 1 cut(s) 380
Psp6I CCWGG 5 cut(s) 736, 841, 930, 1036, 1231
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 5 cut(s) 736, 841, 930, 1036, 1231
PspN4I GGNNCC 4 cut(s) 212, 777, 954, 1386
PspPI GGNCC 2 cut(s) 144, 938
PstI CTGCAG 1 cut(s) 479
PsuI RGATCY 2 cut(s) 177, 1384
RsaI GTAC 4 cut(s) 7, 158, 170, 370
RsaNI GTAC 4 cut(s) 6, 157, 169, 369
RseI CAYNNNNRTG 1 cut(s) 831
SaqAI TTAA 2 cut(s) 524, 903
SatI GCNGC 8 cut(s) 91, 102, 105, 390, 478, 801, 895, 986
Sau96I GGNCC 2 cut(s) 144, 938
ScrFI CCNGG 7 cut(s) 148, 738, 843, 932, 1038, 1116, 1233
SduI GDGCHC 2 cut(s) 1198, 1417
SexAI ACCWGGT 1 cut(s) 930
SfaNI GCATC 3 cut(s) 468, 877, 1513
SfcI CTRYAG 1 cut(s) 475
SfuI TTCGAA 1 cut(s) 808
SinI GGWCC 2 cut(s) 144, 938
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 894
Sse9I AATT 9 cut(s) 305, 570, 759, 900, 1032, 1095, 1179, 1302, 1429
SsiI CCGC 3 cut(s) 93, 282, 895
SspI AATATT 2 cut(s) 996, 1066
SspMI CTAG 3 cut(s) 1349, 1418, 1472
StyD4I CCNGG 7 cut(s) 146, 736, 841, 930, 1036, 1114, 1231
StyI CCWWGG 1 cut(s) 1185
TaaI ACNGT 4 cut(s) 128, 493, 814, 1330
TaiI ACGT 3 cut(s) 42, 382, 1295
TaqI TCGA 4 cut(s) 36, 83, 808, 1504
TasI AATT 9 cut(s) 305, 570, 759, 900, 1032, 1095, 1179, 1302, 1429
TauI GCSGC 1 cut(s) 897
TfiI GAWTC 5 cut(s) 298, 332, 805, 823, 1160
Tru1I TTAA 2 cut(s) 524, 903
Tru9I TTAA 2 cut(s) 524, 903
TscAI CASTG 3 cut(s) 487, 718, 759
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 7 cut(s) 90, 101, 104, 389, 477, 800, 985
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 7 cut(s) 89, 137, 737, 743, 815, 1358, 1467
TspGWI ACGGA 2 cut(s) 23, 452
TspRI CASTG 3 cut(s) 487, 718, 759
VneI GTGCAC 1 cut(s) 1194
VpaK11BI GGWCC 2 cut(s) 144, 938
XapI RAATTY 3 cut(s) 759, 1032, 1302
XceI RCATGY 1 cut(s) 894
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 3 cut(s) 1349, 1418, 1472
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.