Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008324

Physical Location & Seq

Genomic Coordinates Reverse (-)

33240300 .. 33244748

Gene Structure 4449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG313500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGCTTTTAAGAGAAGCCATGACAGATCCACTGTTAGAACGATACAGTGTAATAATTCTTGATGAGGCTCATGAGAGGACTTTAGCAACAGATGTTCTGTTTGGGCTTCTGAAGGAAGTATTGAAAAATAGACCTGATATGAAGCTGGTTGTTATGAGTGCTACACTTGAGGCTGAGAAGTTTCAGGGTTATTTCAACGGTGCACCACTAATGAAGGTTCCTGGCAGGCTTCATCCAGTTGAAATTTTTTACACTGAGGAACCTGAGAGGGACTACCTGGAGGCAGCAATTCGAACTGTTGTACAGATTCATATGTATGAGACTCCAGGAGATATACTTGTTTTTTTAACTGGAGAAGAGGAGATAGAAGATGCATGCCGCAAAATCAACAAAGAAATTTCAAACCTGGGTGATCAGGTTGGTCCAGTGAAAGTGGTGCCCCTGTATTCAACTCTCCCTCCAGCTATGCAGCAGAAAATATTTGACGCTGCTCCTCCTCCCGCAACAGAAGGCGGTCCTGCAGGAAGGAAAATTGTGGTGTCAACTAACATTGCAGAAACTTCTCTGACCATAGATGGGATCGTGTATGTTATTGATCCAGGTTTTTCTAAACAGAAAGTTTATAACCCACGAGTGCGTGTTGAATCCTTGTTGGTATCTCCGATTTCTAAGGCTAGTGCACATCAGAGGTCAGGGCGTGCTGGAAGAACTCAGCCAGGCAAATGTTTCAGACTATATACTGAGAAAAGTTTCCATAATGATCTTGTACCTCAGACATATCCAGAAATACTGAGATCAAATCTTGCAAATACGGTGCTTACTTTGAAGAAACTAGGAATAGATGATTTGGTTCATTTTGATTTTATGGATCCCCCTGCTCCAGAGACATTAATGAGAGCACTCGAAGTTTTGAATTATTTGGGTGCATTGGATGATGATGGTAACTTGACCAAGCTGGGTGAGATTATGAGCGAGTTCCCTCTAGATCCTCAGATGTCAAAGATGCTTGTTGTTAGCCCCGAGTTTAACTGCTCAAATGAGATTTTGTCGATCTCTGCCATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCTCAGAAAGCTGCAGATGAAGCAAAAGCTAGGTTTGGACACATCGATGGAGATCATCTCACACTGCTGAATGTGTATCATGCATACAAGCAAAACAATGAAGATCCATCGTGGTGCTATGAGAACTTTGTCAATCAGAGGGCATTGAAGTCTGCAGACAATGTTAGACAACAGCTAGTGCGCATTATGGCTCGGTTTAATCTCCAGCTATGCAGTACTGATTTTAAGAGTCGGGACTACTACATCAACATCAGAAAGGCTATGCTAGCTGGGTATTTCATGCAGGTGGCTCATCTGGAACGCACTGGTCACTACCTTACTGTGAAGGATAACCAAGTTGTACATTTGCATCCATCAAATTGCTTGGATCACAAGCCAGAGTGGGTGATTTACAACGAGTACGTCTTAACGAGCAGGAATTTTATCCGCACAGTGACAGATATCCGTGGTGAATGGCTAGTTGATATCGCACCACACTACTATGATTTGGCCAACTTTCCCCAGTGTGAGGCCAAGCGAGTTCTTGAGAAGCTTTACAGGAAGCGGGACGACAAGGAGGATAACAGAAACAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

558

Amino Acids

63.64

Weight (kDa)

6.06

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	98 - 237	8.3e-10	Helicase conserved C-terminal domain
WHD_HA2	PF04408	300 - 328	1.7e-11	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	329 - 388	8e-15	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	450 - 526	5.9e-25	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47250 AT3G62310 AT3G62310 AT3G62310
fragaria_vesca	FvH4_1g26860 FvH4_1g26860
malus_domestica	MD09G1286000.v1.1 MD17G1278600.v1.1
prunus_persica	Prupe.3G007400_v2.0.a1
pyrus_communis	pycom09g19330 pycom17g27620 pycom17g27630
rosa_chinensis	RchiOBHm_Chr3g0487101
rosa_laevigata	RLG00000023033
rosa_multiflora	Rmu_co8377811.1_g000001 Rmu_ssc0000271.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395180
rosa_rugosa	Rorug03G0231000
rosa_samantha	Rh3AG279300 Rh3BG315300 Rh3CG313500 Rh3DG310300
rosa_wichuraiana	Rw3G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AarI	CACCTGC	1 cut(s)	1372
Acc16I	TGCGCA	1 cut(s)	1280
Acc36I	ACCTGC	1 cut(s)	1372
AccB1I	GGYRCC	1 cut(s)	436
AciI	CCGC	5 cut(s)	379, 501, 513, 1525, 1642
AclWI	GGATC	8 cut(s)	20, 587, 590, 863, 876, 980, 1196, 1473
AcoI	YGGCCR	1 cut(s)	1587
AcsI	RAATTY	3 cut(s)	243, 396, 1516
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	6 cut(s)	303, 768, 1071, 1315, 1440, 1499
AfiI	CCNNNNNNNGG	3 cut(s)	576, 1093, 1606
AgsI	TTSAA	9 cut(s)	124, 196, 242, 402, 450, 644, 826, 913, 1246
AjnI	CCWGG	6 cut(s)	220, 276, 325, 405, 598, 715
AluBI	AGCT	9 cut(s)	145, 464, 955, 1109, 1127, 1273, 1306, 1367, 1630
AluI	AGCT	9 cut(s)	145, 464, 955, 1109, 1127, 1273, 1306, 1367, 1630
Alw21I	GWGCWC	3 cut(s)	205, 682, 901
Alw26I	GTCTC	2 cut(s)	314, 878
Alw44I	GTGCAC	2 cut(s)	201, 678
AlwI	GGATC	8 cut(s)	20, 587, 590, 863, 876, 980, 1196, 1473
Ama87I	CYCGRG	1 cut(s)	1019
AoxI	GGCC	3 cut(s)	1088, 1587, 1608
ApaLI	GTGCAC	2 cut(s)	201, 678
ApeKI	GCWGC	4 cut(s)	284, 469, 488, 1109
ApoI	RAATTY	3 cut(s)	243, 396, 1516
AseI	ATTAAT	1 cut(s)	890
Asp700I	GAANNNNTTC	1 cut(s)	749
AspA2I	CCTAGG	1 cut(s)	1091
AspLEI	GCGC	1 cut(s)	1281
AspS9I	GGNCC	2 cut(s)	422, 515
AsuHPI	GGTGA	4 cut(s)	422, 971, 1495, 1559
AsuII	TTCGAA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	1363
AvaI	CYCGRG	1 cut(s)	1019
AvaII	GGWCC	2 cut(s)	422, 515
AvrII	CCTAGG	1 cut(s)	1091
BaeGI	GKGCMC	3 cut(s)	205, 441, 682
BalI	TGGCCA	1 cut(s)	1589
BamHI	GGATCC	1 cut(s)	868
BanI	GGYRCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	630
Bbv12I	GWGCWC	3 cut(s)	205, 682, 901
BbvI	GCAGC	4 cut(s)	296, 475, 481, 1096
BccI	CCATC	5 cut(s)	569, 932, 1139, 1213, 1459
BciT130I	CCWGG	6 cut(s)	222, 278, 327, 407, 600, 717
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	314, 878
BfaI	CTAG	8 cut(s)	675, 833, 983, 1092, 1128, 1274, 1364, 1556
BfmI	CTRYAG	3 cut(s)	519, 1110, 1251
BfuAI	ACCTGC	1 cut(s)	1372
BisI	GCNGC	5 cut(s)	285, 379, 470, 489, 1110
BlnI	CCTAGG	1 cut(s)	1091
BlsI	GCNGC	5 cut(s)	286, 380, 471, 490, 1111
BmcAI	AGTACT	1 cut(s)	1315
Bme1390I	CCNGG	6 cut(s)	222, 278, 327, 407, 600, 717
Bme18I	GGWCC	2 cut(s)	422, 515
BmeT110I	CYCGRG	1 cut(s)	1019
BmgT120I	GGNCC	2 cut(s)	422, 515
BmiI	GGNNCC	4 cut(s)	219, 261, 438, 870
BmrFI	CCNGG	6 cut(s)	222, 278, 327, 407, 600, 717
BmrI	ACTGGG	1 cut(s)	1594
BmsI	GCATC	3 cut(s)	361, 993, 1456
BmtI	GCTAGC	1 cut(s)	1367
BmuI	ACTGGG	1 cut(s)	1594
BplI	GAGNNNNNCTC	2 cut(s)	1140, 1172
BpmI	CTGGAG	6 cut(s)	299, 309, 372, 444, 864, 1286
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	2 cut(s)	188, 1643
Bsa29I	ATCGAT	1 cut(s)	1143
BsaBI	GATNNNNATC	1 cut(s)	1149
BsaJI	CCNNGG	3 cut(s)	406, 1091, 1543
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	3 cut(s)	576, 1093, 1606
Bse1I	ACTGG	5 cut(s)	236, 355, 425, 1408, 1600
Bse3DI	GCAATG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	1149
BseBI	CCWGG	6 cut(s)	222, 278, 327, 407, 600, 717
BseCI	ATCGAT	1 cut(s)	1143
BseDI	CCNNGG	3 cut(s)	406, 1091, 1543
BseGI	GGATG	3 cut(s)	232, 937, 1447
BseJI	GATNNNNATC	1 cut(s)	1149
BseLI	CCNNNNNNNGG	3 cut(s)	576, 1093, 1606
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	9 cut(s)	165, 246, 255, 725, 732, 782, 785, 1004, 1115
BseNI	ACTGG	5 cut(s)	236, 355, 425, 1408, 1600
BseRI	GAGGAG	3 cut(s)	374, 483, 486
BseSI	GKGCMC	3 cut(s)	205, 441, 682
BseXI	GCAGC	4 cut(s)	296, 475, 481, 1096
BseYI	CCCAGC	2 cut(s)	955, 1367
BshFI	GGCC	3 cut(s)	1090, 1589, 1610
BshNI	GGYRCC	1 cut(s)	436
BshVI	ATCGAT	1 cut(s)	1143
BsiHKAI	GWGCWC	3 cut(s)	205, 682, 901
BsiHKCI	CYCGRG	1 cut(s)	1019
BsiSI	CCGG	1 cut(s)	1087
BslFI	GGGAC	3 cut(s)	284, 1346, 1658
BslI	CCNNNNNNNGG	3 cut(s)	576, 1093, 1606
BsmAI	GTCTC	2 cut(s)	314, 878
BsmFI	GGGAC	3 cut(s)	284, 1346, 1658
BsnI	GGCC	3 cut(s)	1090, 1589, 1610
BsoBI	CYCGRG	1 cut(s)	1019
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	4 cut(s)	205, 441, 682, 901
Bsp1407I	TGTACA	2 cut(s)	301, 1438
BspACI	CCGC	5 cut(s)	379, 501, 513, 1525, 1642
BspANI	GGCC	3 cut(s)	1090, 1589, 1610
BspCNI	CTCAG	9 cut(s)	166, 247, 256, 724, 733, 783, 784, 1003, 1114
BspDI	ATCGAT	1 cut(s)	1143
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	219, 261, 438, 870
BspMAI	CTGCAG	3 cut(s)	523, 1114, 1255
BspMI	ACCTGC	1 cut(s)	1372
BspOI	GCTAGC	1 cut(s)	1367
BspPI	GGATC	8 cut(s)	20, 587, 590, 863, 876, 980, 1196, 1473
BspT104I	TTCGAA	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	549
BsrGI	TGTACA	2 cut(s)	301, 1438
BsrI	ACTGG	5 cut(s)	236, 355, 425, 1408, 1600
BssECI	CCNNGG	3 cut(s)	406, 1091, 1543
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	1091
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	6 cut(s)	222, 278, 327, 407, 600, 717
Bst4CI	ACNGT	7 cut(s)	33, 47, 200, 298, 814, 1420, 1531
Bst6I	CTCTTC	1 cut(s)	351
BstAUI	TGTACA	2 cut(s)	301, 1438
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	4 cut(s)	227, 376, 699, 1365
BstDSI	CCRYGG	1 cut(s)	1543
BstF5I	GGATG	3 cut(s)	232, 937, 1447
BstHHI	GCGC	1 cut(s)	1281
BstMAI	GTCTC	2 cut(s)	314, 878
BstMWI	GCNNNNNNNGC	3 cut(s)	1106, 1118, 1364
BstNI	CCWGG	6 cut(s)	222, 278, 327, 407, 600, 717
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	6 cut(s)	220, 276, 325, 405, 598, 715
BstSFI	CTRYAG	3 cut(s)	519, 1110, 1251
BstSLI	GKGCMC	3 cut(s)	205, 441, 682
BstV1I	GCAGC	4 cut(s)	296, 475, 481, 1096
BstX2I	RGATCY	4 cut(s)	25, 868, 985, 1201
BstYI	RGATCY	4 cut(s)	25, 868, 985, 1201
Bsu15I	ATCGAT	1 cut(s)	1143
BsuRI	GGCC	3 cut(s)	1090, 1589, 1610
BsuTUI	ATCGAT	1 cut(s)	1143
BtgI	CCRYGG	1 cut(s)	1543
BtsCI	GGATG	3 cut(s)	232, 937, 1447
BtsI	GCAGTG	1 cut(s)	1160
BtsIMutI	CAGTG	8 cut(s)	29, 52, 252, 432, 1160, 1401, 1536, 1607
BveI	ACCTGC	1 cut(s)	1372
Cac8I	GCNNGC	4 cut(s)	227, 376, 699, 1365
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	1281
Cfr13I	GGNCC	2 cut(s)	422, 515
ClaI	ATCGAT	1 cut(s)	1143
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	6 cut(s)	302, 767, 1070, 1314, 1439, 1498
CviAII	CATG	6 cut(s)	19, 71, 375, 1060, 1178, 1378
CviQI	GTAC	6 cut(s)	302, 767, 1070, 1314, 1439, 1498
EaeI	YGGCCR	1 cut(s)	1587
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	1091
Eco32I	GATATC	2 cut(s)	1540, 1564
Eco47I	GGWCC	2 cut(s)	422, 515
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	1019
EcoRII	CCWGG	6 cut(s)	220, 276, 325, 405, 598, 715
EcoRV	GATATC	2 cut(s)	1540, 1564
EcoT14I	CCWWGG	1 cut(s)	1091
EcoT22I	ATGCAT	2 cut(s)	376, 1183
ErhI	CCWWGG	1 cut(s)	1091
FaeI	CATG	6 cut(s)	22, 74, 378, 1063, 1181, 1381
FaqI	GGGAC	3 cut(s)	284, 1346, 1658
FatI	CATG	6 cut(s)	18, 70, 374, 1059, 1177, 1377
FauI	CCCGC	2 cut(s)	508, 1635
FauNDI	CATATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	5 cut(s)	285, 379, 470, 489, 1110
FokI	GGATG	3 cut(s)	219, 944, 1434
Fsp4HI	GCNGC	5 cut(s)	285, 379, 470, 489, 1110
FspAI	RTGCGCAY	1 cut(s)	1280
FspBI	CTAG	8 cut(s)	675, 833, 983, 1092, 1128, 1274, 1364, 1556
FspI	TGCGCA	1 cut(s)	1280
GlaI	GCGC	1 cut(s)	1280
GluI	GCNGC	5 cut(s)	285, 379, 470, 489, 1110
GsaI	CCCAGC	2 cut(s)	959, 1371
GsuI	CTGGAG	6 cut(s)	299, 309, 372, 444, 864, 1286
HaeIII	GGCC	3 cut(s)	1090, 1589, 1610
HapII	CCGG	1 cut(s)	1087
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	1 cut(s)	1281
Hin1II	CATG	6 cut(s)	22, 74, 378, 1063, 1181, 1381
Hin6I	GCGC	1 cut(s)	1279
HinP1I	GCGC	1 cut(s)	1279
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	1628
HinfI	GANTC	4 cut(s)	307, 322, 644, 1327
HpaII	CCGG	1 cut(s)	1087
HphI	GGTGA	4 cut(s)	422, 971, 1495, 1559
Hpy166II	GTNNAC	3 cut(s)	203, 543, 680
Hpy188III	TCNNGA	8 cut(s)	59, 71, 782, 881, 983, 1331, 1394, 1622
Hpy8I	GTNNAC	3 cut(s)	203, 543, 680
HpyAV	CCTTC	5 cut(s)	106, 208, 503, 519, 1417
HpyCH4III	ACNGT	7 cut(s)	33, 47, 200, 298, 814, 1420, 1531
HpyCH4IV	ACGT	1 cut(s)	1500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1106, 1118, 1364
HpySE526I	ACGT	1 cut(s)	1500
Hsp92II	CATG	6 cut(s)	22, 74, 378, 1063, 1181, 1381
HspAI	GCGC	1 cut(s)	1279
Ksp22I	TGATCA	1 cut(s)	412
LmnI	GCTCC	2 cut(s)	496, 883
Lsp1109I	GCAGC	4 cut(s)	296, 475, 481, 1096
LweI	GCATC	3 cut(s)	361, 993, 1456
MaeI	CTAG	8 cut(s)	675, 833, 983, 1092, 1128, 1274, 1364, 1556
MaeII	ACGT	1 cut(s)	1500
MaeIII	GTNAC	3 cut(s)	941, 1406, 1531
MboII	GAAGA	5 cut(s)	368, 380, 717, 838, 1211
MfeI	CAATTG	1 cut(s)	1075
MflI	RGATCY	4 cut(s)	25, 868, 985, 1201
MhlI	GDGCHC	4 cut(s)	205, 441, 682, 901
MlsI	TGGCCA	1 cut(s)	1589
MluCI	AATT	9 cut(s)	54, 243, 288, 396, 531, 913, 1075, 1456, 1516
MluNI	TGGCCA	1 cut(s)	1589
MlyI	GAGTC	2 cut(s)	316, 1336
Mox20I	TGGCCA	1 cut(s)	1589
Mph1103I	ATGCAT	2 cut(s)	376, 1183
MroXI	GAANNNNTTC	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	1589
MseI	TTAA	7 cut(s)	8, 347, 890, 1026, 1296, 1323, 1505
MslI	CAYNNNNRTG	5 cut(s)	315, 1143, 1210, 1382, 1578
Msp20I	TGGCCA	1 cut(s)	1589
MspI	CCGG	1 cut(s)	1087
MspR9I	CCNGG	6 cut(s)	222, 278, 327, 407, 600, 717
MunI	CAATTG	1 cut(s)	1075
MvaI	CCWGG	6 cut(s)	222, 278, 327, 407, 600, 717
MwoI	GCNNNNNNNGC	3 cut(s)	1106, 1118, 1364
NdeI	CATATG	1 cut(s)	312
NheI	GCTAGC	1 cut(s)	1363
NlaIII	CATG	6 cut(s)	22, 74, 378, 1063, 1181, 1381
NlaIV	GGNNCC	4 cut(s)	219, 261, 438, 870
NmuCI	GTSAC	2 cut(s)	1406, 1531
NsbI	TGCGCA	1 cut(s)	1280
NsiI	ATGCAT	2 cut(s)	376, 1183
NspI	RCATGY	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	378
PagI	TCATGA	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	1372
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	2 cut(s)	307, 644
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	5 cut(s)	286, 380, 471, 490, 1111
PleI	GAGTC	2 cut(s)	316, 1335
PpsI	GAGTC	2 cut(s)	316, 1335
PshBI	ATTAAT	1 cut(s)	890
PsiI	TTATAA	1 cut(s)	624
Psp6I	CCWGG	6 cut(s)	220, 276, 325, 405, 598, 715
PspFI	CCCAGC	2 cut(s)	955, 1367
PspGI	CCWGG	6 cut(s)	220, 276, 325, 405, 598, 715
PspN4I	GGNNCC	4 cut(s)	219, 261, 438, 870
PspPI	GGNCC	2 cut(s)	422, 515
PstI	CTGCAG	3 cut(s)	523, 1114, 1255
PsuI	RGATCY	4 cut(s)	25, 868, 985, 1201
RsaI	GTAC	6 cut(s)	303, 768, 1071, 1315, 1440, 1499
RsaNI	GTAC	6 cut(s)	302, 767, 1070, 1314, 1439, 1498
RseI	CAYNNNNRTG	5 cut(s)	315, 1143, 1210, 1382, 1578
SaqAI	TTAA	7 cut(s)	8, 347, 890, 1026, 1296, 1323, 1505
SatI	GCNGC	5 cut(s)	285, 379, 470, 489, 1110
Sau96I	GGNCC	2 cut(s)	422, 515
SbfI	CCTGCAGG	1 cut(s)	523
ScaI	AGTACT	1 cut(s)	1315
SchI	GAGTC	2 cut(s)	316, 1336
ScrFI	CCNGG	6 cut(s)	222, 278, 327, 407, 600, 717
SdaI	CCTGCAGG	1 cut(s)	523
SduI	GDGCHC	4 cut(s)	205, 441, 682, 901
SfaNI	GCATC	3 cut(s)	361, 993, 1456
SfcI	CTRYAG	3 cut(s)	519, 1110, 1251
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	2 cut(s)	422, 515
SmiMI	CAYNNNNRTG	5 cut(s)	315, 1143, 1210, 1382, 1578
SmlI	CTYRAG	2 cut(s)	167, 1622
SmoI	CTYRAG	2 cut(s)	167, 1622
SphI	GCATGC	1 cut(s)	378
Sse8387I	CCTGCAGG	1 cut(s)	523
Sse9I	AATT	9 cut(s)	54, 243, 288, 396, 531, 913, 1075, 1456, 1516
SsiI	CCGC	5 cut(s)	379, 501, 513, 1525, 1642
SspI	AATATT	1 cut(s)	480
SspMI	CTAG	8 cut(s)	675, 833, 983, 1092, 1128, 1274, 1364, 1556
StyD4I	CCNGG	6 cut(s)	220, 276, 325, 405, 598, 715
StyI	CCWWGG	1 cut(s)	1091
TaaI	ACNGT	7 cut(s)	33, 47, 200, 298, 814, 1420, 1531
TaiI	ACGT	1 cut(s)	1503
TaqI	TCGA	4 cut(s)	292, 903, 1049, 1143
TasI	AATT	9 cut(s)	54, 243, 288, 396, 531, 913, 1075, 1456, 1516
TatI	WGTACW	3 cut(s)	301, 1313, 1438
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	2 cut(s)	307, 644
Tru1I	TTAA	7 cut(s)	8, 347, 890, 1026, 1296, 1323, 1505
Tru9I	TTAA	7 cut(s)	8, 347, 890, 1026, 1296, 1323, 1505
TscAI	CASTG	8 cut(s)	36, 52, 259, 432, 1167, 1408, 1536, 1607
TseFI	GTSAC	2 cut(s)	1406, 1531
TseI	GCWGC	4 cut(s)	284, 469, 488, 1109
Tsp45I	GTSAC	2 cut(s)	1406, 1531
TspDTI	ATGAA	8 cut(s)	155, 221, 227, 299, 842, 1131, 1212, 1366
TspGWI	ACGGA	1 cut(s)	1532
TspRI	CASTG	8 cut(s)	36, 52, 259, 432, 1167, 1408, 1536, 1607
VneI	GTGCAC	2 cut(s)	201, 678
VpaK11BI	GGWCC	2 cut(s)	422, 515
VspI	ATTAAT	1 cut(s)	890
XapI	RAATTY	3 cut(s)	243, 396, 1516
XbaI	TCTAGA	1 cut(s)	982
XceI	RCATGY	1 cut(s)	378
XmaJI	CCTAGG	1 cut(s)	1091
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	8 cut(s)	675, 833, 983, 1092, 1128, 1274, 1364, 1556
ZrmI	AGTACT	1 cut(s)	1315
Zsp2I	ATGCAT	2 cut(s)	376, 1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.