Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377811.1

Orthogroup ID

OG0008324

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1054

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 931 bp

atgaagctggttgttatgagtgctacacttgaggctgagaagtttcagggttatttcaacggtgcaccactaatgaaggttcctggcaggcttcatccagttgaaattttttacactgaggaacctgagagggactacctggaggcagcaattcgaactgttgtacagattcatatgtatgagactccaggagatatacttgtttttttaactggagaagaggagatagaagatgcatgccgcaaaatcaacaaagaaatttcaaacctgggtgatcaggttggtccagtgaaagtggtgcccctgtattcaactctccctccagctatgcagcagaaaatatttgacgctgctcctcctcccgcaacagaaggcggtcctgcaggaaggaaaattgtggtgtcaactaacattgcagaaacttctctgaccatagatgggatcgtgtatgttattgatccaggtttttctaaacagaaagtttataacccacgagtgcgtgttgaatccttgttggtatctccgatttctaaggctagtgcacatcagaggtcagggcgtgctggaagaactcagccaggcaaatgtttcagactatatactgagaaaagtttccataatgatcttgtacctcagacatatccagaaatactgagatcaaatcttgcaaatacggtgcttactttgaagaaactaggaatagatgatttggttcattttgattttatggatccccctgctccagagacattaatgagagcactcgaagttttgaattatttgggtgcattggatgatgatggtaacttgaccaagctgggtgagattatgagcgagttccctctagatcctcagatgtcaaagatgcttgttgttagccccgagtttaactgctcaaatgagattttgtcgatctctgccatgctttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

310

Amino Acids

34.3

Weight (kDa)

5.11

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47250 AT3G62310 AT3G62310 AT3G62310
fragaria_vesca	FvH4_1g26860 FvH4_1g26860
malus_domestica	MD09G1286000.v1.1 MD17G1278600.v1.1
prunus_persica	Prupe.3G007400_v2.0.a1
pyrus_communis	pycom09g19330 pycom17g27620 pycom17g27630
rosa_chinensis	RchiOBHm_Chr3g0487101
rosa_laevigata	RLG00000023033
rosa_multiflora	Rmu_co8377811.1_g000001 Rmu_ssc0000271.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395180
rosa_rugosa	Rorug03G0231000
rosa_samantha	Rh3AG279300 Rh3BG315300 Rh3CG313500 Rh3DG310300
rosa_wichuraiana	Rw3G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AccB1I	GGYRCC	1 cut(s)	298
AciI	CCGC	3 cut(s)	241, 363, 375
AclWI	GGATC	5 cut(s)	449, 452, 725, 738, 842
AcsI	RAATTY	2 cut(s)	105, 258
AfaI	GTAC	2 cut(s)	165, 630
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgsI	TTSAA	7 cut(s)	58, 104, 264, 312, 506, 688, 775
AjnI	CCWGG	6 cut(s)	82, 138, 187, 267, 460, 577
AluBI	AGCT	3 cut(s)	7, 326, 817
AluI	AGCT	3 cut(s)	7, 326, 817
Alw21I	GWGCWC	3 cut(s)	67, 544, 763
Alw26I	GTCTC	2 cut(s)	176, 740
Alw44I	GTGCAC	2 cut(s)	63, 540
AlwI	GGATC	5 cut(s)	449, 452, 725, 738, 842
Ama87I	CYCGRG	1 cut(s)	881
ApaLI	GTGCAC	2 cut(s)	63, 540
ApeKI	GCWGC	3 cut(s)	146, 331, 350
ApoI	RAATTY	2 cut(s)	105, 258
AseI	ATTAAT	1 cut(s)	752
Asp700I	GAANNNNTTC	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	284, 377
AsuHPI	GGTGA	2 cut(s)	284, 833
AsuII	TTCGAA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	2 cut(s)	284, 377
BaeGI	GKGCMC	3 cut(s)	67, 303, 544
BamHI	GGATCC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	3 cut(s)	67, 544, 763
BbvI	GCAGC	3 cut(s)	158, 337, 343
BccI	CCATC	2 cut(s)	431, 794
BciT130I	CCWGG	6 cut(s)	84, 140, 189, 269, 462, 579
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	176, 740
BfaI	CTAG	3 cut(s)	537, 695, 845
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	4 cut(s)	147, 241, 332, 351
BlsI	GCNGC	4 cut(s)	148, 242, 333, 352
Bme1390I	CCNGG	6 cut(s)	84, 140, 189, 269, 462, 579
Bme18I	GGWCC	2 cut(s)	284, 377
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	2 cut(s)	284, 377
BmiI	GGNNCC	4 cut(s)	81, 123, 300, 732
BmrFI	CCNGG	6 cut(s)	84, 140, 189, 269, 462, 579
BmsI	GCATC	2 cut(s)	223, 855
BpmI	CTGGAG	5 cut(s)	161, 171, 234, 306, 726
Bpu14I	TTCGAA	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse1I	ACTGG	3 cut(s)	98, 217, 287
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	6 cut(s)	84, 140, 189, 269, 462, 579
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	94, 799
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	8 cut(s)	27, 108, 117, 587, 594, 644, 647, 866
BseNI	ACTGG	3 cut(s)	98, 217, 287
BseRI	GAGGAG	3 cut(s)	236, 345, 348
BseSI	GKGCMC	3 cut(s)	67, 303, 544
BseXI	GCAGC	3 cut(s)	158, 337, 343
BseYI	CCCAGC	1 cut(s)	817
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	3 cut(s)	67, 544, 763
BsiHKCI	CYCGRG	1 cut(s)	881
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	2 cut(s)	176, 740
BsmFI	GGGAC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	881
Bsp119I	TTCGAA	1 cut(s)	154
Bsp1286I	GDGCHC	4 cut(s)	67, 303, 544, 763
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	8 cut(s)	274, 441, 457, 622, 656, 730, 847, 912
BspACI	CCGC	3 cut(s)	241, 363, 375
BspCNI	CTCAG	8 cut(s)	28, 109, 118, 586, 595, 645, 646, 865
BspLI	GGNNCC	4 cut(s)	81, 123, 300, 732
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	5 cut(s)	449, 452, 725, 738, 842
BspT104I	TTCGAA	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	411
BsrGI	TGTACA	1 cut(s)	163
BsrI	ACTGG	3 cut(s)	98, 217, 287
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	8 cut(s)	274, 441, 457, 622, 656, 730, 847, 912
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	6 cut(s)	84, 140, 189, 269, 462, 579
Bst4CI	ACNGT	3 cut(s)	62, 160, 676
Bst6I	CTCTTC	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	163
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	3 cut(s)	89, 238, 561
BstDEI	CTNAG	9 cut(s)	36, 117, 126, 531, 573, 603, 633, 653, 852
BstF5I	GGATG	2 cut(s)	94, 799
BstKTI	GATC	8 cut(s)	277, 444, 460, 625, 659, 733, 850, 915
BstMAI	GTCTC	2 cut(s)	176, 740
BstMBI	GATC	8 cut(s)	274, 441, 457, 622, 656, 730, 847, 912
BstNI	CCWGG	6 cut(s)	84, 140, 189, 269, 462, 579
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	6 cut(s)	82, 138, 187, 267, 460, 577
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	3 cut(s)	67, 303, 544
BstV1I	GCAGC	3 cut(s)	158, 337, 343
BstX2I	RGATCY	2 cut(s)	730, 847
BstYI	RGATCY	2 cut(s)	730, 847
BtsCI	GGATG	2 cut(s)	94, 799
BtsIMutI	CAGTG	2 cut(s)	114, 294
Cac8I	GCNNGC	3 cut(s)	89, 238, 561
Cfr13I	GGNCC	2 cut(s)	284, 377
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	164, 629
CviAII	CATG	2 cut(s)	237, 922
CviJI	RGCY	8 cut(s)	7, 35, 91, 326, 536, 577, 817, 879
CviKI_1	RGCY	8 cut(s)	7, 35, 91, 326, 536, 577, 817, 879
CviQI	GTAC	2 cut(s)	164, 629
DdeI	CTNAG	9 cut(s)	36, 117, 126, 531, 573, 603, 633, 653, 852
DpnI	GATC	8 cut(s)	276, 443, 459, 624, 658, 732, 849, 914
DpnII	GATC	8 cut(s)	274, 441, 457, 622, 656, 730, 847, 912
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	284, 377
Eco88I	CYCGRG	1 cut(s)	881
EcoRII	CCWGG	6 cut(s)	82, 138, 187, 267, 460, 577
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	2 cut(s)	240, 925
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	236, 921
FauI	CCCGC	1 cut(s)	370
FauNDI	CATATG	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	147, 241, 332, 351
FokI	GGATG	2 cut(s)	81, 806
Fsp4HI	GCNGC	4 cut(s)	147, 241, 332, 351
FspBI	CTAG	3 cut(s)	537, 695, 845
GluI	GCNGC	4 cut(s)	147, 241, 332, 351
GsaI	CCCAGC	1 cut(s)	821
GsuI	CTGGAG	5 cut(s)	161, 171, 234, 306, 726
HgaI	GACGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	240, 925
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	3 cut(s)	169, 184, 506
HphI	GGTGA	2 cut(s)	284, 833
Hpy166II	GTNNAC	3 cut(s)	65, 405, 542
Hpy188I	TCNGA	6 cut(s)	429, 525, 549, 593, 636, 855
Hpy188III	TCNNGA	3 cut(s)	644, 743, 845
Hpy8I	GTNNAC	3 cut(s)	65, 405, 542
HpyAV	CCTTC	3 cut(s)	70, 365, 381
HpyCH4III	ACNGT	3 cut(s)	62, 160, 676
HpyCH4V	TGCA	8 cut(s)	65, 236, 331, 383, 416, 542, 668, 788
HpyF3I	CTNAG	9 cut(s)	36, 117, 126, 531, 573, 603, 633, 653, 852
Hsp92II	CATG	2 cut(s)	240, 925
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	8 cut(s)	274, 441, 457, 622, 656, 730, 847, 912
LmnI	GCTCC	2 cut(s)	358, 745
Lsp1109I	GCAGC	3 cut(s)	158, 337, 343
LweI	GCATC	2 cut(s)	223, 855
MaeI	CTAG	3 cut(s)	537, 695, 845
MaeIII	GTNAC	1 cut(s)	803
MalI	GATC	8 cut(s)	276, 443, 459, 624, 658, 732, 849, 914
MboI	GATC	8 cut(s)	274, 441, 457, 622, 656, 730, 847, 912
MboII	GAAGA	4 cut(s)	230, 242, 579, 700
MflI	RGATCY	2 cut(s)	730, 847
MhlI	GDGCHC	4 cut(s)	67, 303, 544, 763
MluCI	AATT	5 cut(s)	105, 150, 258, 393, 775
MlyI	GAGTC	1 cut(s)	178
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	3 cut(s)	209, 752, 888
MslI	CAYNNNNRTG	1 cut(s)	177
MspR9I	CCNGG	6 cut(s)	84, 140, 189, 269, 462, 579
MvaI	CCWGG	6 cut(s)	84, 140, 189, 269, 462, 579
NdeI	CATATG	1 cut(s)	174
NdeII	GATC	8 cut(s)	274, 441, 457, 622, 656, 730, 847, 912
NlaIII	CATG	2 cut(s)	240, 925
NlaIV	GGNNCC	4 cut(s)	81, 123, 300, 732
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	154
PaeI	GCATGC	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	2 cut(s)	169, 506
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	148, 242, 333, 352
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PshBI	ATTAAT	1 cut(s)	752
PsiI	TTATAA	1 cut(s)	486
Psp6I	CCWGG	6 cut(s)	82, 138, 187, 267, 460, 577
PspFI	CCCAGC	1 cut(s)	817
PspGI	CCWGG	6 cut(s)	82, 138, 187, 267, 460, 577
PspN4I	GGNNCC	4 cut(s)	81, 123, 300, 732
PspPI	GGNCC	2 cut(s)	284, 377
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	730, 847
RsaI	GTAC	2 cut(s)	165, 630
RsaNI	GTAC	2 cut(s)	164, 629
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	209, 752, 888
SatI	GCNGC	4 cut(s)	147, 241, 332, 351
Sau3AI	GATC	8 cut(s)	274, 441, 457, 622, 656, 730, 847, 912
Sau96I	GGNCC	2 cut(s)	284, 377
SbfI	CCTGCAGG	1 cut(s)	385
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	6 cut(s)	84, 140, 189, 269, 462, 579
SdaI	CCTGCAGG	1 cut(s)	385
SduI	GDGCHC	4 cut(s)	67, 303, 544, 763
SfaNI	GCATC	2 cut(s)	223, 855
SfcI	CTRYAG	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	2 cut(s)	284, 377
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SphI	GCATGC	1 cut(s)	240
Sse8387I	CCTGCAGG	1 cut(s)	385
Sse9I	AATT	5 cut(s)	105, 150, 258, 393, 775
SsiI	CCGC	3 cut(s)	241, 363, 375
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	3 cut(s)	537, 695, 845
StyD4I	CCNGG	6 cut(s)	82, 138, 187, 267, 460, 577
TaaI	ACNGT	3 cut(s)	62, 160, 676
TaqI	TCGA	3 cut(s)	154, 765, 911
TasI	AATT	5 cut(s)	105, 150, 258, 393, 775
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	169, 506
Tru1I	TTAA	3 cut(s)	209, 752, 888
Tru9I	TTAA	3 cut(s)	209, 752, 888
TscAI	CASTG	2 cut(s)	121, 294
TseI	GCWGC	3 cut(s)	146, 331, 350
TspDTI	ATGAA	5 cut(s)	17, 83, 89, 161, 704
TspRI	CASTG	2 cut(s)	121, 294
VneI	GTGCAC	2 cut(s)	63, 540
VpaK11BI	GGWCC	2 cut(s)	284, 377
VspI	ATTAAT	1 cut(s)	752
XapI	RAATTY	2 cut(s)	105, 258
XbaI	TCTAGA	1 cut(s)	844
XceI	RCATGY	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	3 cut(s)	537, 695, 845
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.