Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008324

Physical Location & Seq

Genomic Coordinates Forward (+)

21299446 .. 21303326

Gene Structure 3881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0231000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3345 bp

ATGACAACTTTGTTCCTTCATTTCTTCCTTTTTTTAATTACTACCTGTATTACCAAACTCATCCCTGCAGTTCACAGCAATTGTATTGTAGAACAGCAACTATCACTACTCCATTTCAAGAAAAGTCTTGTATACGTAATTGATCCTCCTTCCCCCAGGCTTATCACATGGAATTCAAGTACTGATTGCTGCTCTTGGCTCGGTGTAACTTGCAGCACTAATGGGTATGTTGTCGGACTTGACCTCAGCAGCGAGTTTGTTTCATGCAGAATTGACAATTCCAGCAGTCTCTTCCAACTTCAACATCTTGAGAGCCTCAATTTGGCCAATAACGTCTTCAATGGCTCTCAAATTCCATCTGCAATTGGAGAGCTTACAAATCTGAGGTATCTAAATTTAGCCCATGGTTTCTATTCCGGGCAAATTCCCATTGAGATTTCACGCTTGGCAAGGTTGGTAAGTCTTGATCTCTCTAGAAATAGCTATGATGGGGTTTCGTTAAAACTTGAAAACCCAAATTTAAGCATGCTAATTCAGAACCTCACAGAGCTTACAGAGTTATATCTTGATTCAGTAGAGATATCAGGACAGGGGAGTGACTGGTGCGAAGCCATATCATCTTCACTGCCAAATCTGAGGGTGTTGAGCTTGTCTTTTTGTGGTCTTTCAGGCCCTATATGTGACTCCCTTGCAAAGCTTCAATCTCTGTATGAGATTGACTTGGGAAATAACTCGTTCTATGCTCCGGTTCCAAGATCCTTTGCCAATTTTTCAAACTTGACTTCTTTGAGTCTCTTTGGTTGTAACTTGCTAGGAATATTTCCCAAAGAGGTCTTTCTTATTCCTTCCCTACAAACCATTGATATTTCTAGTAATCCGGAACTTGGTGGTTCCTTTCCAGAGTTTCCAAAGAATAGGACAAAGCTTTCAACCATATCTCTTTCACATTGCAATTTCACTGGATCCCTCCCCATGTCAATTGAGAACCTTACCCAATTGGTTGGCCTGGACGTGTCATGGAACAGGTTCAATAGTCCTATCAGTCCTATTCACTGGGAAGCCCTTGTTAATCTGAGAAGCCTTGACTTCAGCAACAATCTACTCTATGGGAGTATTCCATCATCTATTGTTTCTCCTCCCTTGCTGGTTGCATTAGCACTTTCTAATAATCATTTCTCTGGTCAAGTCCCTGAATTTTCCAATACCTCTTCACAGTTGCTTCAGAACCTTCTTTTGGGAAACAACAATTTGGAAGGAGAAATACCAACATCTATTTTTAATCTTAAAGGGCTTATGTATCTTGATCTTGCTTCAAACAACTTCAGTGGCTTCCCTTTCAGTGGCCCTCAGCAGCCTAGAACTCTTTCATTTCTTGATCTTTCCCACAATAGCTTGTTGTTTGATTATAATGGTACCAGTTCCCCCTTCCTTCAGATTGAGAACTTGCTATTGGCTTCTAACAAGTTGGTAGGACTCCCAGATTTCTTAAAAAATCAATCCAGACTTTGGCAATTAGACCTTTCGGGAAACCAGATTCAAGGCCAGATACCTAATTGGATTTGGAGGCTCAATTCTCTTGGACTCCTAAATCTCTCTTATAACTCCATTGTAAATCTTGAACCTCTTCTTCCTAATTCTACTTTTACTTTATTTACTCTTGACCTTAATTCCAACAAGATTCAGGGTATCCACTCCTCATATGCCTTCCTTCAGATTGGCCACTTGGGTTTAGCTTCTAACAAGTTGAGAACATTCCCAGACTTCTTGAGAAATCAGTCCACATTAAATTACTTGGACCTTTCAAACAACCAAATTCAAGGCCAGATACCCAATTGGATTTGGAGGCTCAATTCTCTTCAAGAACTGAATCTTTCTTGTAACTCCTTGGAAACTCTAGAAGCTCCTTTACCTATGGCTAATTCTTCTACTGTTGTGACGTCACTTGATCTTCATTCAAACCAGCTTCAGGGACAAATCCCATTGTTCCTACCATTTGCCCATTTTCTGGATTACTCGAGGAATAATTTTAGCTCTAGTCTACCGACTGACATTGGCAGTTTTATCTCTCAAACTAATTTCCTCTCTCTGTCAAGCAATAACTTGCATGGAACCATTCCAAGATCAATTTGCAATACAACTGGTATGGTTCTAGATCTGTCCTATAATTCTTTGAGTGGTATAATTCCGCAATGCTTGACTCAACTTTCGCTTTCAGTCCTTGATTTAAGGACAAACAACCTCACTGGCTCTATTCCTGATAATTTTCTTGAGCATTGTAAGCTACAAACTCTTGATCTCAGTAGAAATAATATACAAGGCCAGTTTCCGAAATCTCTTGTCAACTGCTCAAGTTTAGGGGTTTTAAATCTCGGAAACAATCAGATAACAGATACTTTTCCATGCCTGTTGATGACCATATCCACCTTGCGTGTCCTTGTTTTAAGATCCAACAATCTTTATGGTAGCCTAGGATGTCCCAAGACCAACAGCACATGGCCTGTGCTGCAAATCATAGATTTAGCACACAACCATTTGAATGGTGAAATACCGGCAACGTCTTTCGCAACATGGCAGAAAATGAAGGCTAATGAAGATGATGGTAATCTGGTATTTTCGTACACTCCCCTGTACACAACAGAGACTATTGGGATGGATGTTTATTACAGAGATACAATAACAACTATCATCAAAGGTTTGCAGTTGGATCTGATAAAGATTCTAACTATCTTCACCTTGATTGATTTCTCTTCCAACAATTTTACCGGGTCAATACCCAAGGAAATTGGAGAGCTAAAAGCATTGTATGCCCTCAACTTATCTGGTAATGCTTTCACAGGCGAAATCCCATCATCCTTTGGTAACATGAGTAGCATAGAGTCCTTAGACCTCTCACAGAACCACCTGAGCGGCCGAATTCCACCGCAGCTTTCAACTCTCACTTTCCTTTCGCACTTGAATGTCTCATATAATCAACTGACGGGAAGGATCCCAACCAGCACTCAGTTTTCAACATTTCCAAATACCTCCTTCGAGGGTAACAAAGGATTATGGGGGCCTCCTCTGACATGGGATACAGCAATCGTATTGCCACCTCCAACGTTTAATGGAAGCTCAAGTAATCCGAATTCTGGAGATGAGATTGATTGGGATATCATCAGTGTTGAAATTGGATTTACATGTGGATTTGGGATTGCCATCGGATCGCTTTTGTTTTGCAAAAGATGGAGGAAATGGTATTACAGAGCTATGTTTAACATCCTGTTCAAGACATTCCCTCAGCTGGAACACAGATTTGGTAATCACAGAAGGCATGCTTACATAAATCAAAGGTATTGGAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1114

Amino Acids

123.77

Weight (kDa)

5.77

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 72	3.1e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	92 - 290	1.2e-11	Leucine-rich repeat region
LRR_8	PF13855	407 - 465	9.4e-06	Leucine rich repeat
LRR_8	PF13855	479 - 536	7e-06	Leucine rich repeat
LRR_8	PF13855	575 - 629	4.5e-07	Leucine rich repeat
LRR_8	PF13855	760 - 819	1.4e-07	Leucine rich repeat
LRR_4	PF12799	760 - 797	7.4e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47250 AT3G62310 AT3G62310 AT3G62310
fragaria_vesca	FvH4_1g26860 FvH4_1g26860
malus_domestica	MD09G1286000.v1.1 MD17G1278600.v1.1
prunus_persica	Prupe.3G007400_v2.0.a1
pyrus_communis	pycom09g19330 pycom17g27620 pycom17g27630
rosa_chinensis	RchiOBHm_Chr3g0487101
rosa_laevigata	RLG00000023033
rosa_multiflora	Rmu_co8377811.1_g000001 Rmu_ssc0000271.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395180
rosa_rugosa	Rorug03G0231000
rosa_samantha	Rh3AG279300 Rh3BG315300 Rh3CG313500 Rh3DG310300
rosa_wichuraiana	Rw3G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1407, 1599
AatII	GACGTC	1 cut(s)	1940
Acc65I	GGTACC	1 cut(s)	1412
AccB1I	GGYRCC	1 cut(s)	1412
AccB7I	CCANNNNNTGG	2 cut(s)	1506, 2005
AccBSI	CCGCTC	1 cut(s)	2907
AccI	GTMKAC	2 cut(s)	132, 2038
AccIII	TCCGGA	1 cut(s)	877
AciI	CCGC	3 cut(s)	2186, 2907, 2921
AclI	AACGTT	1 cut(s)	3098
AclWI	GGATC	9 cut(s)	137, 750, 957, 970, 2439, 2712, 2980, 2993, 3208
AcoI	YGGCCR	3 cut(s)	324, 1717, 2908
AcsI	RAATTY	9 cut(s)	172, 351, 394, 423, 517, 1193, 1812, 2913, 3124
AcuI	CTGAAG	6 cut(s)	1072, 1205, 1306, 1415, 1694, 1949
AcyI	GRCGYC	1 cut(s)	1937
AfaI	GTAC	4 cut(s)	181, 1414, 2618, 2630
AfiI	CCNNNNNNNGG	9 cut(s)	322, 884, 1234, 1340, 1506, 1966, 2005, 3128, 3280
AflIII	ACRYGT	2 cut(s)	1011, 3176
AjiI	CACGTC	1 cut(s)	1012
AjnI	CCWGG	2 cut(s)	155, 1005
AjuI	GAANNNNNNNTTGG	8 cut(s)	320, 352, 1217, 1249, 1433, 1465, 3276, 3308
Alw26I	GTCTC	5 cut(s)	293, 797, 2633, 2965, 3331
AlwI	GGATC	9 cut(s)	137, 750, 957, 970, 2439, 2712, 2980, 2993, 3208
Ama87I	CYCGRG	1 cut(s)	2014
Aor13HI	TCCGGA	1 cut(s)	877
ApeKI	GCWGC	6 cut(s)	189, 213, 249, 1351, 2503, 2923
ApoI	RAATTY	9 cut(s)	172, 351, 394, 423, 517, 1193, 1812, 2913, 3124
ArsI	GACNNNNNNTTYG	2 cut(s)	2188, 2220
Asp700I	GAANNNNTTC	3 cut(s)	1025, 1363, 1623
Asp718I	GGTACC	1 cut(s)	1412
AspA2I	CCTAGG	1 cut(s)	2467
AspS9I	GGNCC	4 cut(s)	671, 1343, 1795, 3053
AsuC2I	CCSGG	2 cut(s)	418, 2764
AsuHPI	GGTGA	2 cut(s)	2552, 2722
AvaI	CYCGRG	1 cut(s)	2014
AvaII	GGWCC	1 cut(s)	1795
AvrII	CCTAGG	1 cut(s)	2467
BalI	TGGCCA	2 cut(s)	326, 1719
BamHI	GGATCC	2 cut(s)	962, 2985
BanI	GGYRCC	1 cut(s)	1412
BarI	GAAGNNNNNNTAC	4 cut(s)	1245, 1277, 1890, 1922
BbsI	GAAGAC	1 cut(s)	328
BbvCI	CCTCAGC	3 cut(s)	245, 1347, 3276
BbvI	GCAGC	6 cut(s)	176, 225, 261, 1363, 2490, 2935
BccI	CCATC	8 cut(s)	364, 482, 1126, 2591, 2644, 2854, 3203, 3216
BciT130I	CCWGG	2 cut(s)	157, 1007
BciVI	GTATCC	2 cut(s)	1697, 3064
BcnI	CCSGG	2 cut(s)	418, 2764
BcoDI	GTCTC	5 cut(s)	293, 797, 2633, 2965, 3331
BfaI	CTAG	8 cut(s)	474, 812, 870, 1356, 1895, 2034, 2150, 2468
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	2 cut(s)	1697, 3064
BglII	AGATCT	1 cut(s)	2152
BisI	GCNGC	7 cut(s)	190, 214, 250, 1352, 2504, 2908, 2924
BlnI	CCTAGG	1 cut(s)	2467
BlsI	GCNGC	7 cut(s)	191, 215, 251, 1353, 2505, 2909, 2925
BmcAI	AGTACT	1 cut(s)	181
Bme1390I	CCNGG	4 cut(s)	157, 418, 1007, 2764
Bme18I	GGWCC	1 cut(s)	1795
BmeT110I	CYCGRG	1 cut(s)	2014
BmgBI	CACGTC	1 cut(s)	1012
BmgT120I	GGNCC	4 cut(s)	671, 1343, 1795, 3053
BmiI	GGNNCC	7 cut(s)	750, 892, 964, 1414, 2110, 2987, 3054
BmrFI	CCNGG	4 cut(s)	157, 418, 1007, 2764
BmrI	ACTGGG	1 cut(s)	1063
BmuI	ACTGGG	1 cut(s)	1063
BpiI	GAAGAC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	3150
Bpu10I	CCTNAGC	4 cut(s)	245, 1347, 2903, 3276
BpuEI	CTTGAG	5 cut(s)	329, 1786, 2288, 2332, 3097
BpuMI	CCSGG	2 cut(s)	418, 2764
BsaAI	YACGTR	1 cut(s)	136
BsaBI	GATNNNNATC	2 cut(s)	2601, 3194
BsaHI	GRCGYC	1 cut(s)	1937
BsaJI	CCNNGG	5 cut(s)	155, 403, 1884, 2467, 2775
BsaWI	WCCGGW	2 cut(s)	745, 877
Bsc4I	CCNNNNNNNGG	9 cut(s)	322, 884, 1234, 1340, 1506, 1966, 2005, 3128, 3280
Bse118I	RCCGGY	1 cut(s)	2548
Bse1I	ACTGG	7 cut(s)	605, 964, 1058, 1416, 2143, 2248, 2320
Bse3DI	GCAATG	2 cut(s)	946, 2195
Bse8I	GATNNNNATC	2 cut(s)	2601, 3194
BseAI	TCCGGA	1 cut(s)	877
BseBI	CCWGG	2 cut(s)	157, 1007
BseDI	CCNNGG	5 cut(s)	155, 403, 1884, 2467, 2775
BseGI	GGATG	6 cut(s)	60, 2477, 2655, 2659, 2849, 3255
BseJI	GATNNNNATC	2 cut(s)	2601, 3194
BseLI	CCNNNNNNNGG	9 cut(s)	322, 884, 1234, 1340, 1506, 1966, 2005, 3128, 3280
BseMI	GCAATG	2 cut(s)	946, 2195
BseMII	CTCAG	9 cut(s)	259, 374, 626, 1064, 1361, 2311, 2894, 3014, 3290
BseNI	ACTGG	7 cut(s)	605, 964, 1058, 1416, 2143, 2248, 2320
BseRI	GAGGAG	3 cut(s)	1125, 1684, 3048
BseX3I	CGGCCG	1 cut(s)	2908
BseXI	GCAGC	6 cut(s)	176, 225, 261, 1363, 2490, 2935
Bsh1285I	CGRYCG	1 cut(s)	2911
BshNI	GGYRCC	1 cut(s)	1412
BsiEI	CGRYCG	1 cut(s)	2911
BsiHKCI	CYCGRG	1 cut(s)	2014
BsiSI	CCGG	5 cut(s)	417, 746, 878, 2549, 2763
BslFI	GGGAC	3 cut(s)	1172, 1983, 2460
BslI	CCNNNNNNNGG	9 cut(s)	322, 884, 1234, 1340, 1506, 1966, 2005, 3128, 3280
BsmAI	GTCTC	5 cut(s)	293, 797, 2633, 2965, 3331
BsmBI	CGTCTC	1 cut(s)	3331
BsmFI	GGGAC	3 cut(s)	1172, 1983, 2460
BsoBI	CYCGRG	1 cut(s)	2014
Bsp13I	TCCGGA	1 cut(s)	877
Bsp1407I	TGTACA	1 cut(s)	2628
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	3 cut(s)	2186, 2907, 2921
BspCNI	CTCAG	9 cut(s)	258, 375, 627, 1065, 1360, 2310, 2895, 3013, 3289
BspEI	TCCGGA	1 cut(s)	877
BspLI	GGNNCC	7 cut(s)	750, 892, 964, 1414, 2110, 2987, 3054
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	9 cut(s)	137, 750, 957, 970, 2439, 2712, 2980, 2993, 3208
BspT107I	GGYRCC	1 cut(s)	1412
BsrBI	CCGCTC	1 cut(s)	2907
BsrDI	GCAATG	2 cut(s)	946, 2195
BsrFI	RCCGGY	1 cut(s)	2548
BsrGI	TGTACA	1 cut(s)	2628
BsrI	ACTGG	7 cut(s)	605, 964, 1058, 1416, 2143, 2248, 2320
BssAI	RCCGGY	1 cut(s)	2548
BssECI	CCNNGG	5 cut(s)	155, 403, 1884, 2467, 2775
BssNAI	GTATAC	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	1937
BssT1I	CCWWGG	4 cut(s)	403, 1884, 2467, 2775
Bst1107I	GTATAC	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	157, 1007
Bst4CI	ACNGT	2 cut(s)	1215, 1930
Bst6I	CTCTTC	5 cut(s)	296, 1213, 1629, 1860, 2752
BstACI	GRCGYC	1 cut(s)	1937
BstAPI	GCANNNNNTGC	1 cut(s)	2804
BstAUI	TGTACA	1 cut(s)	2628
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	527, 3312
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	6 cut(s)	60, 2477, 2655, 2659, 2849, 3255
BstMAI	GTCTC	5 cut(s)	293, 797, 2633, 2965, 3331
BstMCI	CGRYCG	1 cut(s)	2911
BstMWI	GCNNNNNNNGC	3 cut(s)	2278, 2503, 2804
BstNI	CCWGG	2 cut(s)	157, 1007
BstNSI	RCATGY	3 cut(s)	529, 3180, 3314
BstSCI	CCNGG	4 cut(s)	155, 416, 1005, 2762
BstSFI	CTRYAG	1 cut(s)	66
BstSNI	TACGTA	1 cut(s)	136
BstV1I	GCAGC	6 cut(s)	176, 225, 261, 1363, 2490, 2935
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	6 cut(s)	755, 962, 2152, 2444, 2704, 2985
BstXI	CCANNNNNNTGG	2 cut(s)	1001, 2537
BstYI	RGATCY	6 cut(s)	755, 962, 2152, 2444, 2704, 2985
BstZ17I	GTATAC	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	2908
BsuI	GTATCC	2 cut(s)	1697, 3064
BtgI	CCRYGG	1 cut(s)	403
BtrI	CACGTC	1 cut(s)	1012
BtsCI	GGATG	6 cut(s)	60, 2477, 2655, 2659, 2849, 3255
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	7 cut(s)	623, 957, 1051, 1330, 1345, 2241, 3163
Cac8I	GCNNGC	2 cut(s)	527, 3312
Cfr10I	RCCGGY	1 cut(s)	2548
Cfr13I	GGNCC	4 cut(s)	671, 1343, 1795, 3053
Csp6I	GTAC	4 cut(s)	180, 1413, 2617, 2629
CspCI	CAANNNNNGTGG	2 cut(s)	1306, 1341
CviQI	GTAC	4 cut(s)	180, 1413, 2617, 2629
DraI	TTTAAA	1 cut(s)	2364
EaeI	YGGCCR	3 cut(s)	324, 1717, 2908
EagI	CGGCCG	1 cut(s)	2908
Eam1104I	CTCTTC	5 cut(s)	296, 1213, 1629, 1860, 2752
EarI	CTCTTC	5 cut(s)	296, 1213, 1629, 1860, 2752
EclXI	CGGCCG	1 cut(s)	2908
Eco105I	TACGTA	1 cut(s)	136
Eco130I	CCWWGG	4 cut(s)	403, 1884, 2467, 2775
Eco32I	GATATC	2 cut(s)	582, 3151
Eco47I	GGWCC	1 cut(s)	1795
Eco52I	CGGCCG	1 cut(s)	2908
Eco57I	CTGAAG	6 cut(s)	1072, 1205, 1306, 1415, 1694, 1949
Eco88I	CYCGRG	1 cut(s)	2014
EcoO109I	RGGNCCY	2 cut(s)	671, 3053
EcoRI	GAATTC	3 cut(s)	172, 2913, 3124
EcoRII	CCWGG	2 cut(s)	155, 1005
EcoRV	GATATC	2 cut(s)	582, 3151
EcoT14I	CCWWGG	4 cut(s)	403, 1884, 2467, 2775
ErhI	CCWWGG	4 cut(s)	403, 1884, 2467, 2775
Esp3I	CGTCTC	1 cut(s)	3331
FalI	AAGNNNNNCTT	2 cut(s)	3298, 3330
FaqI	GGGAC	3 cut(s)	1172, 1983, 2460
FauNDI	CATATG	1 cut(s)	1699
FblI	GTMKAC	2 cut(s)	132, 2038
Fnu4HI	GCNGC	7 cut(s)	190, 214, 250, 1352, 2504, 2908, 2924
FokI	GGATG	6 cut(s)	47, 2484, 2662, 2666, 2836, 3242
Fsp4HI	GCNGC	7 cut(s)	190, 214, 250, 1352, 2504, 2908, 2924
FspBI	CTAG	8 cut(s)	474, 812, 870, 1356, 1895, 2034, 2150, 2468
GluI	GCNGC	7 cut(s)	190, 214, 250, 1352, 2504, 2908, 2924
GsuI	CTGGAG	1 cut(s)	3150
HapII	CCGG	5 cut(s)	417, 746, 878, 2549, 2763
Hin1I	GRCGYC	1 cut(s)	1937
HincII	GTYRAC	1 cut(s)	2341
HindII	GTYRAC	1 cut(s)	2341
HindIII	AAGCTT	2 cut(s)	695, 923
HpaII	CCGG	5 cut(s)	417, 746, 878, 2549, 2763
HphI	GGTGA	2 cut(s)	2552, 2722
Hpy166II	GTNNAC	7 cut(s)	73, 133, 1779, 2039, 2341, 2619, 2631
Hpy8I	GTNNAC	7 cut(s)	73, 133, 1779, 2039, 2341, 2619, 2631
HpyCH4III	ACNGT	2 cut(s)	1215, 1930
HpyCH4IV	ACGT	7 cut(s)	135, 333, 1011, 1937, 2555, 3098, 3340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	2278, 2503, 2804
HpySE526I	ACGT	7 cut(s)	135, 333, 1011, 1937, 2555, 3098, 3340
Hsp92I	GRCGYC	1 cut(s)	1937
Kpn2I	TCCGGA	1 cut(s)	877
KpnI	GGTACC	1 cut(s)	1416
LmnI	GCTCC	2 cut(s)	748, 1906
Lsp1109I	GCAGC	6 cut(s)	176, 225, 261, 1363, 2490, 2935
MaeI	CTAG	8 cut(s)	474, 812, 870, 1356, 1895, 2034, 2150, 2468
MaeII	ACGT	7 cut(s)	135, 333, 1011, 1937, 2555, 3098, 3340
MaeIII	GTNAC	9 cut(s)	205, 596, 680, 803, 1877, 1933, 1938, 2858, 3035
MbiI	CCGCTC	1 cut(s)	2907
MfeI	CAATTG	5 cut(s)	79, 363, 978, 995, 1831
MflI	RGATCY	6 cut(s)	755, 962, 2152, 2444, 2704, 2985
MlsI	TGGCCA	2 cut(s)	326, 1719
MluNI	TGGCCA	2 cut(s)	326, 1719
MlyI	GAGTC	6 cut(s)	677, 799, 1467, 1575, 2191, 2885
MmeI	TCCRAC	7 cut(s)	214, 319, 1695, 2472, 2682, 2775, 3119
Mox20I	TGGCCA	2 cut(s)	326, 1719
MroI	TCCGGA	1 cut(s)	877
MroXI	GAANNNNTTC	3 cut(s)	1025, 1363, 1623
MscI	TGGCCA	2 cut(s)	326, 1719
MslI	CAYNNNNRTG	2 cut(s)	2535, 2955
Msp20I	TGGCCA	2 cut(s)	326, 1719
MspA1I	CMGCKG	1 cut(s)	3280
MspI	CCGG	5 cut(s)	417, 746, 878, 2549, 2763
MspR9I	CCNGG	4 cut(s)	157, 418, 1007, 2764
MunI	CAATTG	5 cut(s)	79, 363, 978, 995, 1831
MvaI	CCWGG	2 cut(s)	157, 1007
MwoI	GCNNNNNNNGC	3 cut(s)	2278, 2503, 2804
NciI	CCSGG	2 cut(s)	418, 2764
NcoI	CCATGG	1 cut(s)	403
NdeI	CATATG	1 cut(s)	1699
NlaIV	GGNNCC	7 cut(s)	750, 892, 964, 1414, 2110, 2987, 3054
NmuCI	GTSAC	4 cut(s)	596, 680, 1933, 1938
NspI	RCATGY	3 cut(s)	529, 3180, 3314
PaeI	GCATGC	2 cut(s)	529, 3314
PaeR7I	CTCGAG	1 cut(s)	2014
PciI	ACATGT	1 cut(s)	3176
PdmI	GAANNNNTTC	3 cut(s)	1025, 1363, 1623
PfeI	GAWTC	5 cut(s)	569, 1534, 1678, 1867, 2716
PflMI	CCANNNNNTGG	2 cut(s)	1506, 2005
PkrI	GCNGC	7 cut(s)	191, 215, 251, 1353, 2505, 2909, 2925
PleI	GAGTC	6 cut(s)	677, 798, 1467, 1575, 2191, 2884
PpsI	GAGTC	6 cut(s)	677, 798, 1467, 1575, 2191, 2884
Ppu21I	YACGTR	1 cut(s)	136
PscI	ACATGT	1 cut(s)	3176
PsiI	TTATAA	2 cut(s)	1407, 1599
Psp1406I	AACGTT	1 cut(s)	3098
Psp6I	CCWGG	2 cut(s)	155, 1005
PspGI	CCWGG	2 cut(s)	155, 1005
PspN4I	GGNNCC	7 cut(s)	750, 892, 964, 1414, 2110, 2987, 3054
PspPI	GGNCC	4 cut(s)	671, 1343, 1795, 3053
PspXI	VCTCGAGB	1 cut(s)	2014
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	6 cut(s)	755, 962, 2152, 2444, 2704, 2985
PvuII	CAGCTG	1 cut(s)	3280
RsaI	GTAC	4 cut(s)	181, 1414, 2618, 2630
RsaNI	GTAC	4 cut(s)	180, 1413, 2617, 2629
RseI	CAYNNNNRTG	2 cut(s)	2535, 2955
SatI	GCNGC	7 cut(s)	190, 214, 250, 1352, 2504, 2908, 2924
Sau96I	GGNCC	4 cut(s)	671, 1343, 1795, 3053
ScaI	AGTACT	1 cut(s)	181
SchI	GAGTC	6 cut(s)	677, 799, 1467, 1575, 2191, 2885
ScrFI	CCNGG	4 cut(s)	157, 418, 1007, 2764
SfcI	CTRYAG	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	2014
SinI	GGWCC	1 cut(s)	1795
SlaI	CTCGAG	1 cut(s)	2014
SmiMI	CAYNNNNRTG	2 cut(s)	2535, 2955
SmlI	CTYRAG	6 cut(s)	308, 1765, 2014, 2267, 2347, 3112
SmoI	CTYRAG	6 cut(s)	308, 1765, 2014, 2267, 2347, 3112
SnaBI	TACGTA	1 cut(s)	136
SphI	GCATGC	2 cut(s)	529, 3314
SsiI	CCGC	3 cut(s)	2186, 2907, 2921
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	8 cut(s)	474, 812, 870, 1356, 1895, 2034, 2150, 2468
StyD4I	CCNGG	4 cut(s)	155, 416, 1005, 2762
StyI	CCWWGG	4 cut(s)	403, 1884, 2467, 2775
TaaI	ACNGT	2 cut(s)	1215, 1930
TaiI	ACGT	7 cut(s)	138, 336, 1014, 1940, 2558, 3101, 3343
TaqI	TCGA	2 cut(s)	2015, 3030
TatI	WGTACW	2 cut(s)	179, 2628
TauI	GCSGC	1 cut(s)	2910
TfiI	GAWTC	5 cut(s)	569, 1534, 1678, 1867, 2716
TscAI	CASTG	7 cut(s)	630, 964, 1058, 1330, 1345, 2248, 3163
TseFI	GTSAC	4 cut(s)	596, 680, 1933, 1938
TseI	GCWGC	6 cut(s)	189, 213, 249, 1351, 2503, 2923
Tsp45I	GTSAC	4 cut(s)	596, 680, 1933, 1938
TspDTI	ATGAA	6 cut(s)	8, 252, 1356, 1940, 2594, 2604
TspRI	CASTG	7 cut(s)	630, 964, 1058, 1330, 1345, 2248, 3163
Van91I	CCANNNNNTGG	2 cut(s)	1506, 2005
VpaK11BI	GGWCC	1 cut(s)	1795
XapI	RAATTY	9 cut(s)	172, 351, 394, 423, 517, 1193, 1812, 2913, 3124
XbaI	TCTAGA	3 cut(s)	473, 1894, 2149
XceI	RCATGY	3 cut(s)	529, 3180, 3314
XhoI	CTCGAG	1 cut(s)	2014
XmaJI	CCTAGG	1 cut(s)	2467
XmiI	GTMKAC	2 cut(s)	132, 2038
XmnI	GAANNNNTTC	3 cut(s)	1025, 1363, 1623
XspI	CTAG	8 cut(s)	474, 812, 870, 1356, 1895, 2034, 2150, 2468
ZraI	GACGTC	1 cut(s)	1938
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.