Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008324

Physical Location & Seq

Genomic Coordinates Forward (+)

25767422 .. 25768229

Gene Structure 808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTGTATCATGCATACAAGCAAAATAGAGGATCCGTCATGGTGCTATGAGAACTTTGTCAATCAGAGGGCATTGAAGTCTGCAGACAACGTCAGGCAGCAGCTAGTGCGCATTATGGCCCGGTTTAACCTCAAGCTATGCAGTACTGAATTCAATAGTCGTGACTACTACATCAACATAAGGAAGGCCATGCTAGCTGGATATTTCATGCAGGTGGCTCATCTGGAACGTACTGGACACTATCTGACAGTGAAAGATAACCAAGTGGTGCATTTGCATCCGTCGAATTGCTTGGACCACAAGCCAGAATGGGTTATCTACAATGAGTATGTTTTGACAAGCAGGAATTTTATCCGTACAGTGACAGATGTTCGTGGGGAGTGGTTAGTCGATATAGCACCCCACTACTATGACTTGGCGAATTTTCCCCAGTGTGAGGCCAAGCGTGTTCTTGAGAAGCTATACAGGAAGCGGGAGGACAAGGATGAGAACAAAAACCGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

169

Amino Acids

20.16

Weight (kDa)

8.93

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	60 - 136	8e-26	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47250 AT3G62310 AT3G62310 AT3G62310
fragaria_vesca	FvH4_1g26860 FvH4_1g26860
malus_domestica	MD09G1286000.v1.1 MD17G1278600.v1.1
prunus_persica	Prupe.3G007400_v2.0.a1
pyrus_communis	pycom09g19330 pycom17g27620 pycom17g27630
rosa_chinensis	RchiOBHm_Chr3g0487101
rosa_laevigata	RLG00000023033
rosa_multiflora	Rmu_co8377811.1_g000001 Rmu_ssc0000271.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395180
rosa_rugosa	Rorug03G0231000
rosa_samantha	Rh3AG279300 Rh3BG315300 Rh3CG313500 Rh3DG310300
rosa_wichuraiana	Rw3G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc16I	TGCGCA	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	202
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	2 cut(s)	26, 39
AcsI	RAATTY	3 cut(s)	149, 346, 421
AfaI	GTAC	3 cut(s)	145, 232, 358
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	76, 154
AluBI	AGCT	4 cut(s)	103, 136, 197, 460
AluI	AGCT	4 cut(s)	103, 136, 197, 460
AlwI	GGATC	2 cut(s)	26, 39
AoxI	GGCC	3 cut(s)	117, 186, 438
ApeKI	GCWGC	2 cut(s)	97, 100
ApoI	RAATTY	3 cut(s)	149, 346, 421
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	118, 295
AsuC2I	CCSGG	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	295
BamHI	GGATCC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	109, 112
BcnI	CCSGG	1 cut(s)	121
BfaI	CTAG	2 cut(s)	104, 194
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	98, 101
BlsI	GCNGC	2 cut(s)	99, 102
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	118, 295
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	286
BmtI	GCTAGC	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	424
BpuEI	CTTGAG	2 cut(s)	116, 473
BpuMI	CCSGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	238, 430
BseGI	GGATG	2 cut(s)	277, 490
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseNI	ACTGG	2 cut(s)	238, 430
BseXI	GCAGC	2 cut(s)	109, 112
BshFI	GGCC	3 cut(s)	119, 188, 440
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	436
BsnI	GGCC	3 cut(s)	119, 188, 440
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	3 cut(s)	119, 188, 440
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	202
BspOI	GCTAGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	26, 39
BsrI	ACTGG	2 cut(s)	238, 430
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	250, 361
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	277, 490
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 194
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	109, 112
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	119, 188, 440
BtsCI	GGATG	2 cut(s)	277, 490
BtsIMutI	CAGTG	3 cut(s)	255, 366, 437
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	118, 295
Csp6I	GTAC	3 cut(s)	144, 231, 357
CviAII	CATG	4 cut(s)	10, 39, 190, 208
CviJI	RGCY	9 cut(s)	103, 119, 136, 188, 197, 218, 304, 440, 460
CviKI_1	RGCY	9 cut(s)	103, 119, 136, 188, 197, 218, 304, 440, 460
CviQI	GTAC	3 cut(s)	144, 231, 357
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	4 cut(s)	13, 42, 193, 211
FatI	CATG	4 cut(s)	9, 38, 189, 207
FauI	CCCGC	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	98, 101
FokI	GGATG	2 cut(s)	264, 497
Fsp4HI	GCNGC	2 cut(s)	98, 101
FspAI	RTGCGCAY	1 cut(s)	110
FspBI	CTAG	2 cut(s)	104, 194
FspI	TGCGCA	1 cut(s)	110
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	2 cut(s)	98, 101
HaeIII	GGCC	3 cut(s)	119, 188, 440
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	13, 42, 193, 211
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	66, 246
Hpy188III	TCNNGA	3 cut(s)	161, 224, 452
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	250, 361
HpyCH4IV	ACGT	2 cut(s)	90, 229
HpyCH4V	TGCA	6 cut(s)	13, 83, 141, 211, 271, 277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 194
HpySE526I	ACGT	2 cut(s)	90, 229
Hsp92II	CATG	4 cut(s)	13, 42, 193, 211
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	31
Lsp1109I	GCAGC	2 cut(s)	109, 112
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	104, 194
MaeII	ACGT	2 cut(s)	90, 229
MaeIII	GTNAC	2 cut(s)	161, 361
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	4 cut(s)	149, 286, 346, 421
MnlI	CCTC	5 cut(s)	22, 60, 140, 430, 469
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	212, 408
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	106, 194
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	1 cut(s)	31
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	4 cut(s)	13, 42, 193, 211
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	161, 361
NsbI	TGCGCA	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	202
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	99, 102
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	118, 295
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	3 cut(s)	145, 232, 358
RsaNI	GTAC	3 cut(s)	144, 231, 357
RseI	CAYNNNNRTG	2 cut(s)	212, 408
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	98, 101
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	118, 295
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	8 cut(s)	93, 105, 132, 138, 199, 216, 232, 462
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	212, 408
SmlI	CTYRAG	2 cut(s)	131, 452
SmoI	CTYRAG	2 cut(s)	131, 452
Sse9I	AATT	4 cut(s)	149, 286, 346, 421
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	2 cut(s)	104, 194
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	250, 361
TaiI	ACGT	2 cut(s)	93, 232
TaqI	TCGA	2 cut(s)	284, 390
TasI	AATT	4 cut(s)	149, 286, 346, 421
TatI	WGTACW	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	3 cut(s)	255, 366, 437
TseFI	GTSAC	2 cut(s)	161, 361
TseI	GCWGC	2 cut(s)	97, 100
Tsp45I	GTSAC	2 cut(s)	161, 361
TspDTI	ATGAA	1 cut(s)	196
TspGWI	ACGGA	3 cut(s)	24, 270, 344
TspRI	CASTG	3 cut(s)	255, 366, 437
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	3 cut(s)	149, 346, 421
XspI	CTAG	2 cut(s)	104, 194
ZrmI	AGTACT	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.