pycom17g27710
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013233
Physical Location & Seq
Reverse (-)
25824238 .. 25825913
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
ATGAAGGATTTGTATGTTTGTGCCGTGGAAGATTCCAATCCCCTTTTTCAGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTTCCCCCTCGAAATCCTAACAAGGTCAACTATTCTGTACACTGCACACTAAATCCCAAACTAATCCGTATTCTTTGTCTCCCAGCTCAAACCAGACAAAAGGAAATGGATATTAATAATGTTCATGATCAGATGAGATCAGCAGGTTATGGCTCATTAGCAGCAGCAGCAACTCATGATCAACCAATTGAAGGACTGGATTTAAGAAAAGGCCCATGGACAGCCGAGGAAGACTCCATTCTCAACAATTACGTCAACATCCATGGTGAAGGTCACTGGAATTCATTGGCTTGCCATGCAGGTCTGAAACGAACTGGCAAAAGCTGCAGATTAAGGTGGTTAAACTACTTGCGACCAAATGTTCAACGTGGAAACATAACTCTCCAAGAACAACTTATAATTCTTCAACTTCATTCCCGCTGGGGCAACAGATGGTCCAAGATAGCCGAATACTTGCCCGGTAGAACAGACAATGAGATAAAGAACTATTGGAGAACAAGAGTGCAGAAGCAAGCAAAACAGCTCAAGTGTGACGTTAACAGCAAACAATTCCAAGACGCCATGCGTTACATCTGGATTCCCCGTCTAATTGAACGGATCGGGTCCTTGCCCGAAGCTGTACCAGATCAACCCAGTACTTGTATCACTACGACATCTGAGTCCGAGTGTCAGTACTTGGTTGATCCTAATTTCGTGCCTGAAACCTCTGGCAGTACTTCATCAGACTCATATGATCAGGTTCAAGTTTGTTCAATTCCCACCGACCCAACTAGCAGTGGTGATGAATTCATGACTTATCCATGCAGCGGTCAATATGGTTCAGAAAACGGGTCGGGTTATAGTAAAAATGGTAATTCAGATATTCATGGCTTTGAGCAAAGCAATTATTGGTCAACCGGTGGGGACACATCAGTGGAGAACTTGTGGACTGAAGAGAATATATGGTTCTTGCAACAGCAGCTTAGTGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

358

Amino Acids

40.3

Weight (kDa)

5.55

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 103 - 150 1.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 106 - 163 4.9e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 156 - 199 1.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 160 - 207 5.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AasI GACNNNNNNGTC 1 cut(s) 757
Acc36I ACCTGC 2 cut(s) 233, 389
AciI CCGC 2 cut(s) 517, 906
AclWI GGATC 2 cut(s) 704, 776
AcsI RAATTY 2 cut(s) 379, 884
AcuI CTGAAG 1 cut(s) 1050
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 5 cut(s) 138, 720, 736, 773, 814
AfiI CCNNNNNNNGG 2 cut(s) 290, 905
AgeI ACCGGT 1 cut(s) 995
AgsI TTSAA 6 cut(s) 290, 464, 506, 692, 842, 852
AleI CACNNNNGTG 1 cut(s) 1010
AluBI AGCT 5 cut(s) 185, 423, 622, 716, 1060
AluI AGCT 5 cut(s) 185, 423, 622, 716, 1060
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 704, 776
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 6 cut(s) 260, 263, 266, 423, 903, 1057
ApoI RAATTY 2 cut(s) 379, 884
AseI ATTAAT 1 cut(s) 213
AsiGI ACCGGT 1 cut(s) 995
AspS9I GGNCC 3 cut(s) 311, 534, 702
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 2 cut(s) 377, 890
AvaII GGWCC 2 cut(s) 534, 702
BbsI GAAGAC 2 cut(s) 45, 336
BbvI GCAGC 6 cut(s) 272, 275, 278, 410, 915, 1069
BccI CCATC 1 cut(s) 525
BceAI ACGGC 1 cut(s) 8
BclI TGATCA 3 cut(s) 226, 277, 832
BcnI CCSGG 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 1 cut(s) 424
BfuAI ACCTGC 2 cut(s) 233, 389
BisI GCNGC 6 cut(s) 261, 264, 267, 424, 904, 1058
BlsI GCNGC 6 cut(s) 262, 265, 268, 425, 905, 1059
BmcAI AGTACT 3 cut(s) 736, 773, 814
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 2 cut(s) 534, 702
BmgT120I GGNCC 3 cut(s) 311, 534, 702
BmiI GGNNCC 1 cut(s) 703
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 726
BmuI ACTGGG 1 cut(s) 726
BpiI GAAGAC 2 cut(s) 45, 336
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 657
BsaJI CCNNGG 4 cut(s) 24, 314, 324, 361
BsaWI WCCGGW 1 cut(s) 995
BsaXI ACNNNNNCTCC 2 cut(s) 1007, 1037
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 905
Bse118I RCCGGY 1 cut(s) 995
Bse1I ACTGG 4 cut(s) 300, 380, 418, 732
Bse8I GATNNNNATC 1 cut(s) 36
BseDI CCNNGG 4 cut(s) 24, 314, 324, 361
BseGI GGATG 1 cut(s) 357
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 2 cut(s) 290, 905
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 4 cut(s) 300, 380, 418, 732
BseXI GCAGC 6 cut(s) 272, 275, 278, 410, 915, 1069
BseYI CCCAGC 2 cut(s) 181, 519
BsgI GTGCAG 2 cut(s) 127, 623
BshFI GGCC 1 cut(s) 312
BshTI ACCGGT 1 cut(s) 995
BsiSI CCGG 2 cut(s) 558, 996
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 2 cut(s) 290, 905
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 1016
BsnI GGCC 1 cut(s) 312
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 7 cut(s) 226, 236, 277, 696, 724, 781, 832
Bsp19I CCATGG 2 cut(s) 314, 361
BspACI CCGC 2 cut(s) 517, 906
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 748
BspHI TCATGA 3 cut(s) 223, 274, 888
BspLI GGNNCC 1 cut(s) 703
BspMAI CTGCAG 1 cut(s) 428
BspMI ACCTGC 2 cut(s) 233, 389
BspPI GGATC 2 cut(s) 704, 776
BspQI GCTCTTC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 995
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 4 cut(s) 300, 380, 418, 732
BssAI RCCGGY 1 cut(s) 995
BssECI CCNNGG 4 cut(s) 24, 314, 324, 361
BssMI GATC 7 cut(s) 226, 236, 277, 696, 724, 781, 832
BssNI GRCGYC 1 cut(s) 657
BssT1I CCWWGG 2 cut(s) 314, 361
Bst6I CTCTTC 2 cut(s) 105, 1026
BstACI GRCGYC 1 cut(s) 657
BstAPI GCANNNNNTGC 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 391, 612
BstDEI CTNAG 2 cut(s) 756, 1061
BstDSI CCRYGG 3 cut(s) 24, 314, 361
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 7 cut(s) 229, 239, 280, 699, 727, 784, 835
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 7 cut(s) 226, 236, 277, 696, 724, 781, 832
BstMWI GCNNNNNNNGC 4 cut(s) 266, 395, 423, 1057
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 6 cut(s) 272, 275, 278, 410, 915, 1069
BstV2I GAAGAC 2 cut(s) 45, 336
BsuRI GGCC 1 cut(s) 312
BtgI CCRYGG 3 cut(s) 24, 314, 361
BtsCI GGATG 1 cut(s) 357
BtsI GCAGTG 2 cut(s) 139, 880
BtsIMutI CAGTG 4 cut(s) 139, 373, 880, 1017
BveI ACCTGC 2 cut(s) 233, 389
Cac8I GCNNGC 2 cut(s) 391, 612
CciI TCATGA 3 cut(s) 223, 274, 888
Cfr10I RCCGGY 1 cut(s) 995
Cfr13I GGNCC 3 cut(s) 311, 534, 702
CseI GACGC 1 cut(s) 665
Csp6I GTAC 5 cut(s) 137, 719, 735, 772, 813
CspAI ACCGGT 1 cut(s) 995
CviAII CATG 9 cut(s) 224, 275, 315, 362, 395, 661, 889, 900, 965
CviQI GTAC 5 cut(s) 137, 719, 735, 772, 813
DdeI CTNAG 2 cut(s) 756, 1061
DpnI GATC 7 cut(s) 228, 238, 279, 698, 726, 783, 834
DpnII GATC 7 cut(s) 226, 236, 277, 696, 724, 781, 832
DrdI GACNNNNNNGTC 1 cut(s) 757
DseDI GACNNNNNNGTC 1 cut(s) 757
Eam1104I CTCTTC 2 cut(s) 105, 1026
EarI CTCTTC 2 cut(s) 105, 1026
Eco130I CCWWGG 2 cut(s) 314, 361
Eco47I GGWCC 2 cut(s) 534, 702
Eco57I CTGAAG 1 cut(s) 1050
EcoO109I RGGNCCY 1 cut(s) 702
EcoRI GAATTC 2 cut(s) 379, 884
EcoT14I CCWWGG 2 cut(s) 314, 361
ErhI CCWWGG 2 cut(s) 314, 361
FaeI CATG 9 cut(s) 227, 278, 318, 365, 398, 664, 892, 903, 968
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 1 cut(s) 1016
FatI CATG 9 cut(s) 223, 274, 314, 361, 394, 660, 888, 899, 964
FauI CCCGC 1 cut(s) 524
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 3 cut(s) 226, 277, 832
Fnu4HI GCNGC 6 cut(s) 261, 264, 267, 424, 904, 1058
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 6 cut(s) 261, 264, 267, 424, 904, 1058
FspBI CTAG 1 cut(s) 870
GluI GCNGC 6 cut(s) 261, 264, 267, 424, 904, 1058
GsaI CCCAGC 2 cut(s) 185, 523
HaeIII GGCC 1 cut(s) 312
HapII CCGG 2 cut(s) 558, 996
HgaI GACGC 1 cut(s) 665
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 9 cut(s) 227, 278, 318, 365, 398, 664, 892, 903, 968
HincII GTYRAC 4 cut(s) 127, 355, 637, 993
HindII GTYRAC 4 cut(s) 127, 355, 637, 993
HinfI GANTC 5 cut(s) 32, 332, 676, 758, 824
HpaI GTTAAC 1 cut(s) 637
HpaII CCGG 2 cut(s) 558, 996
HphI GGTGA 2 cut(s) 377, 890
Hpy166II GTNNAC 6 cut(s) 127, 139, 355, 637, 993, 1026
Hpy188I TCNGA 7 cut(s) 231, 405, 757, 763, 823, 922, 958
Hpy188III TCNNGA 4 cut(s) 224, 275, 673, 889
Hpy8I GTNNAC 6 cut(s) 127, 139, 355, 637, 993, 1026
HpyAV CCTTC 2 cut(s) 284, 362
HpyCH4IV ACGT 3 cut(s) 351, 466, 633
HpyCH4V TGCA 6 cut(s) 144, 398, 426, 604, 903, 1051
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 395, 423, 1057
HpyF3I CTNAG 2 cut(s) 756, 1061
HpySE526I ACGT 3 cut(s) 351, 466, 633
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 9 cut(s) 227, 278, 318, 365, 398, 664, 892, 903, 968
Ksp22I TGATCA 3 cut(s) 226, 277, 832
KspAI GTTAAC 1 cut(s) 637
Kzo9I GATC 7 cut(s) 226, 236, 277, 696, 724, 781, 832
LguI GCTCTTC 1 cut(s) 105
Lsp1109I GCAGC 6 cut(s) 272, 275, 278, 410, 915, 1069
MaeI CTAG 1 cut(s) 870
MaeII ACGT 3 cut(s) 351, 466, 633
MaeIII GTNAC 3 cut(s) 371, 629, 665
MalI GATC 7 cut(s) 228, 238, 279, 698, 726, 783, 834
MboI GATC 7 cut(s) 226, 236, 277, 696, 724, 781, 832
MboII GAAGA 6 cut(s) 41, 45, 92, 341, 494, 1043
MfeI CAATTG 1 cut(s) 285
MlyI GAGTC 3 cut(s) 326, 767, 818
MnlI CCTC 3 cut(s) 117, 319, 814
MseI TTAA 5 cut(s) 213, 302, 431, 440, 636
MslI CAYNNNNRTG 1 cut(s) 1010
MspA1I CMGCKG 2 cut(s) 519, 906
MspI CCGG 2 cut(s) 558, 996
MspR9I CCNGG 1 cut(s) 558
MunI CAATTG 1 cut(s) 285
MwoI GCNNNNNNNGC 4 cut(s) 266, 395, 423, 1057
NciI CCSGG 1 cut(s) 558
NcoI CCATGG 2 cut(s) 314, 361
NdeI CATATG 1 cut(s) 829
NdeII GATC 7 cut(s) 226, 236, 277, 696, 724, 781, 832
NlaIII CATG 9 cut(s) 227, 278, 318, 365, 398, 664, 892, 903, 968
NlaIV GGNNCC 1 cut(s) 703
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 371, 629
OliI CACNNNNGTG 1 cut(s) 1010
PagI TCATGA 3 cut(s) 223, 274, 888
PciSI GCTCTTC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 32, 676
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 6 cut(s) 262, 265, 268, 425, 905, 1059
PleI GAGTC 3 cut(s) 326, 766, 818
PpsI GAGTC 3 cut(s) 326, 766, 818
PpuMI RGGWCCY 1 cut(s) 702
PshBI ATTAAT 1 cut(s) 213
PsiI TTATAA 1 cut(s) 497
Psp5II RGGWCCY 1 cut(s) 702
PspFI CCCAGC 2 cut(s) 181, 519
PspN4I GGNNCC 1 cut(s) 703
PspPI GGNCC 3 cut(s) 311, 534, 702
PspPPI RGGWCCY 1 cut(s) 702
PstI CTGCAG 1 cut(s) 428
RsaI GTAC 5 cut(s) 138, 720, 736, 773, 814
RsaNI GTAC 5 cut(s) 137, 719, 735, 772, 813
RseI CAYNNNNRTG 1 cut(s) 1010
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 5 cut(s) 213, 302, 431, 440, 636
SatI GCNGC 6 cut(s) 261, 264, 267, 424, 904, 1058
Sau3AI GATC 7 cut(s) 226, 236, 277, 696, 724, 781, 832
Sau96I GGNCC 3 cut(s) 311, 534, 702
ScaI AGTACT 3 cut(s) 736, 773, 814
SchI GAGTC 3 cut(s) 326, 767, 818
ScrFI CCNGG 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 424
SinI GGWCC 2 cut(s) 534, 702
SmiMI CAYNNNNRTG 1 cut(s) 1010
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SsiI CCGC 2 cut(s) 517, 906
SspMI CTAG 1 cut(s) 870
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 2 cut(s) 314, 361
TaiI ACGT 3 cut(s) 354, 469, 636
TaqI TCGA 1 cut(s) 109
TatI WGTACW 4 cut(s) 136, 734, 771, 812
TfiI GAWTC 2 cut(s) 32, 676
Tru1I TTAA 5 cut(s) 213, 302, 431, 440, 636
Tru9I TTAA 5 cut(s) 213, 302, 431, 440, 636
TscAI CASTG 4 cut(s) 146, 380, 880, 1017
TseFI GTSAC 2 cut(s) 371, 629
TseI GCWGC 6 cut(s) 260, 263, 266, 423, 903, 1057
Tsp45I GTSAC 2 cut(s) 371, 629
TspDTI ATGAA 8 cut(s) 17, 212, 372, 500, 807, 877, 897, 953
TspGWI ACGGA 2 cut(s) 155, 709
TspRI CASTG 4 cut(s) 146, 380, 880, 1017
VpaK11BI GGWCC 2 cut(s) 534, 702
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 2 cut(s) 379, 884
XspI CTAG 1 cut(s) 870
ZrmI AGTACT 3 cut(s) 736, 773, 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.