pycom17g27850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013474
Physical Location & Seq
Forward (+)
25919155 .. 25921615
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGTGTTTGTCAGCGCCCTGCCGAAGGGCCACGTCAGCACTTCCCAGCTCTGGACTAGCTGCTGGAAAGGGATCCACCCCGGCTGGCTCTTCGCCTCTCGGTTCGTCTCGTTTCTGGCTTTGGCTGGGTTCTTGGCTTGGGATCTTGTCGAATGGAATCCTTCCATTTTCATTTACTACACCGAGTGGACATTTACACTGGTTATCGATCTATTTTGCGCTGGGAACTCTAGTGTCTGGGTACGGTTGTTGGTTATCCTTAAACAAGCCCCCCACTGGAAATGTGACAAGGACGGAAGCTTTGAGAAGTGAAGTGGAAGAGAATAATGGAACTGTGAATACCTATGGGCAAAACGCAAATAACGGTACCATCAAATTGCAAAGCCAGTATGCTCTAGAGGAAATTCAGAAACGAACAGGATATTGGGGTTATCTTATGCAAATTGCATTCCAGACTTGTGCAGGTGCTATTGTCCTTACAGATATAGTCTTTTGGTGTGTCATCGTTCCATTTTTATCAAATGCTCACCTTGGCCTCAATACGTTGATGTGTTGCATGCATACGCTAAATGCAGCATTCCTTCTTCTGGATACCACTCTTAACAGCCTTCCGTTTCCATGGTTCCGCATTTCATATTTTGTCCTCTGGAGCTGCATCTACATTGCCTTCCAGTGGATCATTCATGCATTAGGTTTCCCATGGTGGCCGTATCCATTCCTTGAGCTCGATACGCCATGGGCTCCATTATGGTATTTTTGTGGGGCCGCGGTTCACATCCCTTGCTATGGGATTTTTGCACTGATTATAAAGGCAAAGTATTCACTTCTGCCCAAATGGTTTCCCCACGCTTTTGCGACGCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

32.1

Weight (kDa)

8.51

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47115
fragaria_vesca FvH4_1g26530 FvH4_1g26530
malus_domestica MD09G1288800.v1.1 MD17G1280700.v1.1
prunus_persica Prupe.3G004800_v2.0.a1
pyrus_communis pycom09g19580 pycom17g27850
rosa_chinensis RchiOBHm_Chr3g0486611
rosa_laevigata RLG00000023073
rosa_multiflora Rmu_sc0001508.1_g000003
rosa_roxburghii Rroxscaffold_6G00395770
rosa_rugosa Rorug03G0225600 Rorug03G0225700
rosa_samantha Rh3AG275500 Rh3CG309900 Rh3DG306600
rosa_wichuraiana Rw3G024550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 806
AarI CACCTGC 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 452
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccII CGCG 1 cut(s) 767
AciI CCGC 3 cut(s) 625, 765, 767
AclWI GGATC 4 cut(s) 66, 79, 149, 683
AcoI YGGCCR 1 cut(s) 704
AcsI RAATTY 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 857
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 2 cut(s) 242, 367
AfiI CCNNNNNNNGG 6 cut(s) 24, 50, 275, 586, 672, 785
AjiI CACGTC 1 cut(s) 33
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AluBI AGCT 5 cut(s) 48, 59, 299, 651, 724
AluI AGCT 5 cut(s) 48, 59, 299, 651, 724
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 4 cut(s) 66, 79, 149, 683
AoxI GGCC 4 cut(s) 27, 532, 704, 762
ApeKI GCWGC 3 cut(s) 59, 572, 651
ApoI RAATTY 1 cut(s) 402
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
Asp718I GGTACC 1 cut(s) 365
AspLEI GCGC 2 cut(s) 16, 220
AspS9I GGNCC 2 cut(s) 27, 762
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 518
BaeI ACNNNNGTAYC 2 cut(s) 232, 265
BamHI GGATCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 2 cut(s) 726, 742
Bbv12I GWGCWC 1 cut(s) 726
BbvI GCAGC 3 cut(s) 46, 584, 638
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 691
BciVI GTATCC 2 cut(s) 583, 720
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 4 cut(s) 56, 230, 395, 865
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 452
BfuI GTATCC 2 cut(s) 583, 720
BisI GCNGC 4 cut(s) 60, 573, 652, 765
BlsI GCNGC 4 cut(s) 61, 574, 653, 766
Bme1390I CCNGG 1 cut(s) 80
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 2 cut(s) 27, 762
BmiI GGNNCC 5 cut(s) 73, 367, 623, 741, 763
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 667
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 857
BsaJI CCNNGG 6 cut(s) 78, 529, 617, 698, 734, 765
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 50, 275, 586, 672, 785
Bse1I ACTGG 4 cut(s) 203, 280, 385, 670
Bse3DI GCAATG 1 cut(s) 660
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 6 cut(s) 78, 529, 617, 698, 734, 765
BseGI GGATG 1 cut(s) 774
BseLI CCNNNNNNNGG 6 cut(s) 24, 50, 275, 586, 672, 785
BseMI GCAATG 1 cut(s) 660
BseNI ACTGG 4 cut(s) 203, 280, 385, 670
BseXI GCAGC 3 cut(s) 46, 584, 638
BseYI CCCAGC 3 cut(s) 44, 124, 220
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 767
BshFI GGCC 4 cut(s) 29, 534, 706, 764
BshNI GGYRCC 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 726
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 6 cut(s) 24, 50, 275, 586, 672, 785
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmI GAATGC 2 cut(s) 446, 575
BsnI GGCC 4 cut(s) 29, 534, 706, 764
Bsp1286I GDGCHC 2 cut(s) 726, 742
Bsp143I GATC 4 cut(s) 71, 141, 207, 675
Bsp19I CCATGG 3 cut(s) 617, 698, 734
BspACI CCGC 3 cut(s) 625, 765, 767
BspANI GGCC 4 cut(s) 29, 534, 706, 764
BspDI ATCGAT 1 cut(s) 206
BspFNI CGCG 1 cut(s) 767
BspLI GGNNCC 5 cut(s) 73, 367, 623, 741, 763
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 4 cut(s) 66, 79, 149, 683
BspQI GCTCTTC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 4 cut(s) 203, 280, 385, 670
BssECI CCNNGG 6 cut(s) 78, 529, 617, 698, 734, 765
BssMI GATC 4 cut(s) 71, 141, 207, 675
BssNI GRCGYC 1 cut(s) 857
BssT1I CCWWGG 4 cut(s) 529, 617, 698, 734
Bst4CI ACNGT 3 cut(s) 245, 334, 365
Bst6I CTCTTC 2 cut(s) 94, 312
BstACI GRCGYC 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 85, 557
BstDSI CCRYGG 4 cut(s) 617, 698, 734, 765
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 774
BstFNI CGCG 1 cut(s) 767
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 2 cut(s) 16, 220
BstKTI GATC 4 cut(s) 74, 144, 210, 678
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 4 cut(s) 71, 141, 207, 675
BstMWI GCNNNNNNNGC 2 cut(s) 35, 730
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 78
BstUI CGCG 1 cut(s) 767
BstV1I GCAGC 3 cut(s) 46, 584, 638
BstX2I RGATCY 2 cut(s) 71, 141
BstYI RGATCY 2 cut(s) 71, 141
Bsu15I ATCGAT 1 cut(s) 206
BsuI GTATCC 2 cut(s) 583, 720
BsuRI GGCC 4 cut(s) 29, 534, 706, 764
BsuTUI ATCGAT 1 cut(s) 206
BtgI CCRYGG 4 cut(s) 617, 698, 734, 765
BtrI CACGTC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 774
BtsIMutI CAGTG 4 cut(s) 196, 273, 677, 797
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 2 cut(s) 85, 557
CfoI GCGC 2 cut(s) 16, 220
Cfr13I GGNCC 2 cut(s) 27, 762
Cfr42I CCGCGG 1 cut(s) 768
ClaI ATCGAT 1 cut(s) 206
Csp6I GTAC 2 cut(s) 241, 366
CviAII CATG 5 cut(s) 556, 618, 683, 699, 735
CviQI GTAC 2 cut(s) 241, 366
DpnI GATC 4 cut(s) 73, 143, 209, 677
DpnII GATC 4 cut(s) 71, 141, 207, 675
DraIII CACNNNGTG 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 704
Eam1104I CTCTTC 2 cut(s) 94, 312
EarI CTCTTC 2 cut(s) 94, 312
Ecl136II GAGCTC 1 cut(s) 724
Eco130I CCWWGG 4 cut(s) 529, 617, 698, 734
Eco24I GRGCYC 2 cut(s) 726, 742
Eco53kI GAGCTC 1 cut(s) 724
EcoICRI GAGCTC 1 cut(s) 724
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoT14I CCWWGG 4 cut(s) 529, 617, 698, 734
EcoT22I ATGCAT 2 cut(s) 561, 688
EcoT38I GRGCYC 2 cut(s) 726, 742
ErhI CCWWGG 4 cut(s) 529, 617, 698, 734
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 5 cut(s) 559, 621, 686, 702, 738
FatI CATG 5 cut(s) 555, 617, 682, 698, 734
Fnu4HI GCNGC 4 cut(s) 60, 573, 652, 765
FokI GGATG 1 cut(s) 761
FriOI GRGCYC 2 cut(s) 726, 742
Fsp4HI GCNGC 4 cut(s) 60, 573, 652, 765
FspBI CTAG 4 cut(s) 56, 230, 395, 865
GlaI GCGC 2 cut(s) 15, 219
GluI GCNGC 4 cut(s) 60, 573, 652, 765
GsaI CCCAGC 3 cut(s) 48, 128, 224
GsuI CTGGAG 1 cut(s) 667
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 4 cut(s) 29, 534, 706, 764
HapII CCGG 1 cut(s) 80
HhaI GCGC 2 cut(s) 16, 220
Hin1I GRCGYC 1 cut(s) 857
Hin1II CATG 5 cut(s) 559, 621, 686, 702, 738
Hin6I GCGC 2 cut(s) 14, 218
HinP1I GCGC 2 cut(s) 14, 218
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 1 cut(s) 156
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 2 cut(s) 188, 772
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 5 cut(s) 51, 395, 451, 587, 646
Hpy8I GTNNAC 2 cut(s) 188, 772
Hpy99I CGWCG 1 cut(s) 859
HpyAV CCTTC 5 cut(s) 18, 170, 590, 617, 676
HpyCH4III ACNGT 3 cut(s) 245, 334, 365
HpyCH4IV ACGT 2 cut(s) 32, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 730
HpySE526I ACGT 2 cut(s) 32, 542
Hsp92I GRCGYC 1 cut(s) 857
Hsp92II CATG 5 cut(s) 559, 621, 686, 702, 738
HspAI GCGC 2 cut(s) 14, 218
KpnI GGTACC 1 cut(s) 369
KspI CCGCGG 1 cut(s) 768
Kzo9I GATC 4 cut(s) 71, 141, 207, 675
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 648, 745
Lsp1109I GCAGC 3 cut(s) 46, 584, 638
LweI GCATC 1 cut(s) 663
MaeI CTAG 4 cut(s) 56, 230, 395, 865
MaeII ACGT 2 cut(s) 32, 542
MaeIII GTNAC 1 cut(s) 283
MalI GATC 4 cut(s) 73, 143, 209, 677
MboI GATC 4 cut(s) 71, 141, 207, 675
MboII GAAGA 3 cut(s) 81, 329, 575
MflI RGATCY 2 cut(s) 71, 141
MhlI GDGCHC 2 cut(s) 726, 742
MluCI AATT 3 cut(s) 374, 402, 441
MnlI CCTC 4 cut(s) 105, 391, 545, 653
Mph1103I ATGCAT 2 cut(s) 561, 688
MseI TTAA 2 cut(s) 260, 600
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 80
Mva1269I GAATGC 2 cut(s) 446, 575
MvnI CGCG 1 cut(s) 767
MwoI GCNNNNNNNGC 2 cut(s) 35, 730
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 3 cut(s) 617, 698, 734
NdeII GATC 4 cut(s) 71, 141, 207, 675
NlaIII CATG 5 cut(s) 559, 621, 686, 702, 738
NlaIV GGNNCC 5 cut(s) 73, 367, 623, 741, 763
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 2 cut(s) 561, 688
NspI RCATGY 1 cut(s) 559
PaeI GCATGC 1 cut(s) 559
PaqCI CACCTGC 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 94
PctI GAATGC 2 cut(s) 446, 575
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 4 cut(s) 61, 574, 653, 766
PsiI TTATAA 1 cut(s) 806
Psp124BI GAGCTC 1 cut(s) 726
PspFI CCCAGC 3 cut(s) 44, 124, 220
PspN4I GGNNCC 5 cut(s) 73, 367, 623, 741, 763
PspPI GGNCC 2 cut(s) 27, 762
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
PsuI RGATCY 2 cut(s) 71, 141
RsaI GTAC 2 cut(s) 242, 367
RsaNI GTAC 2 cut(s) 241, 366
SacI GAGCTC 1 cut(s) 726
SacII CCGCGG 1 cut(s) 768
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 260, 600
SatI GCNGC 4 cut(s) 60, 573, 652, 765
Sau3AI GATC 4 cut(s) 71, 141, 207, 675
Sau96I GGNCC 2 cut(s) 27, 762
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 726, 742
SfaNI GCATC 1 cut(s) 663
Sfr303I CCGCGG 1 cut(s) 768
SgrBI CCGCGG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
SphI GCATGC 1 cut(s) 559
Sse9I AATT 3 cut(s) 374, 402, 441
SsiI CCGC 3 cut(s) 625, 765, 767
SspMI CTAG 4 cut(s) 56, 230, 395, 865
SstI GAGCTC 1 cut(s) 726
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 4 cut(s) 529, 617, 698, 734
TaaI ACNGT 3 cut(s) 245, 334, 365
TaiI ACGT 2 cut(s) 35, 545
TaqI TCGA 3 cut(s) 149, 206, 726
TasI AATT 3 cut(s) 374, 402, 441
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 260, 600
Tru9I TTAA 2 cut(s) 260, 600
TscAI CASTG 4 cut(s) 203, 280, 677, 804
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 3 cut(s) 59, 572, 651
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 159, 621, 671
TspGWI ACGGA 2 cut(s) 308, 600
TspRI CASTG 4 cut(s) 203, 280, 677, 804
XagI CCTNNNNNAGG 1 cut(s) 22
XapI RAATTY 1 cut(s) 402
XbaI TCTAGA 1 cut(s) 394
XceI RCATGY 1 cut(s) 559
XspI CTAG 4 cut(s) 56, 230, 395, 865
Zsp2I ATGCAT 2 cut(s) 561, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.