pycom17g28230

meiotic cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004178
Physical Location & Seq
Reverse (-)
26249433 .. 26251951
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGCAGCTGCAAACCATTGAGTCTCAGATTCAAACAGACATAGGAAAGCATACAAACCTCAGTAAATCAAAGAAAAAAAGGCTGGAAACAAGGTTTGAAGAGCAACAAGAAAAACTGAAAGTGATTTATGACAAGTTCAAGGAACAAGTCAATCAGCATCTTCAGGAATGCAGGAGCACACTTGAAGGGCTGGAAGTATACCAGACAGAGTTTAAGGGAACTGTTGATAAGCAAAAAGCATCACACAGAAAGCTTCTCATGCAAGTGGAAGAAGCAATTGAGACCCAACTCAACGATGCCCAAAGAAAAATCCAAGTCACCCAAAGGATGGCGCGTGAAAAGATGCTCCAATTGAAACACGAACTGGCATTGTGTTTAAAAGACGGCATTCTAAGTTGA

Protein Analysis

133

Amino Acids

15.58

Weight (kDa)

9.06

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASY3-like PF20435 2 - 128 2.4e-34 Meiosis-specific protein ASY3-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 328
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 5 cut(s) 32, 98, 139, 185, 355
AluBI AGCT 2 cut(s) 7, 253
AluI AGCT 2 cut(s) 7, 253
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 27, 275
ApeKI GCWGC 2 cut(s) 4, 7
AspLEI GCGC 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 27, 275
BisI GCNGC 2 cut(s) 5, 8
BlsI GCNGC 2 cut(s) 6, 9
BmsI GCATC 4 cut(s) 166, 248, 286, 333
BsaI GGTCTC 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 38, 73
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 27, 275
BsmI GAATGC 2 cut(s) 173, 387
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 37, 72
BspFNI CGCG 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 369
BssNAI GTATAC 1 cut(s) 199
Bst1107I GTATAC 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 24, 59, 392
BstF5I GGATG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 334
BstMAI GTCTC 2 cut(s) 27, 275
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 333
CfoI GCGC 1 cut(s) 334
CviAII CATG 1 cut(s) 259
CviJI RGCY 4 cut(s) 7, 82, 190, 253
CviKI_1 RGCY 4 cut(s) 7, 82, 190, 253
DdeI CTNAG 3 cut(s) 24, 59, 392
DraI TTTAAA 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 146
FaeI CATG 1 cut(s) 262
FaiI YATR 5 cut(s) 41, 51, 129, 199, 260
FatI CATG 1 cut(s) 258
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 5, 8
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 2 cut(s) 5, 8
GlaI GCGC 1 cut(s) 333
GluI GCNGC 2 cut(s) 5, 8
HhaI GCGC 1 cut(s) 334
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 20, 28
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 4, 10, 171, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 3 cut(s) 24, 59, 392
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 332
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 174, 351
LpnPI CCDG 6 cut(s) 68, 149, 157, 176, 215, 350
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 4 cut(s) 166, 248, 286, 333
MaeIII GTNAC 1 cut(s) 316
MboII GAAGA 3 cut(s) 110, 152, 281
MfeI CAATTG 2 cut(s) 276, 350
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 276, 350
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 1 cut(s) 68
MseI TTAA 2 cut(s) 213, 377
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 7
MunI CAATTG 2 cut(s) 276, 350
Mva1269I GAATGC 2 cut(s) 173, 387
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 259
NlaIII CATG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 93
PctI GAATGC 2 cut(s) 173, 387
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 2 cut(s) 6, 9
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 213, 377
SatI GCNGC 2 cut(s) 5, 8
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 179
SetI ASST 4 cut(s) 9, 60, 95, 255
SfaNI GCATC 4 cut(s) 166, 248, 286, 333
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 2 cut(s) 276, 350
TaaI ACNGT 1 cut(s) 223
TasI AATT 2 cut(s) 276, 350
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 2 cut(s) 213, 377
Tru9I TTAA 2 cut(s) 213, 377
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 2 cut(s) 4, 7
Tsp45I GTSAC 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.