Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_290

Orthogroup ID

OG0010233

Physical Location & Seq

Genomic Coordinates Reverse (-)

41846 .. 43006

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACCGTGATAGAGGACACAGAGGAACATGGTGGTAACTCTCAGACATGGGAGGAGATTGACCCAGATGAACTTTCATATGAGGAGTTACTTGCATTGGGCGAAGTTGTTGGAACTGAGAGCAGAGGGCTCTCAGCTGATACTATCGCCTCATTGCCTTCAGTAAGCTACAAGACAGGAAGCAGTCAGAATGGGAGCAATGAGTCGTGTGTCATTTGTCGGTTGGACTTCGAGGATGGTGAGAATTTGACAATACTATCCTGCAAACATTCCTATCATTCTGAGTGCATAAATAATTGGTTGACAATAAACAAGGTCTGCCCTGTTTGCAGCGCTGAAGTTTCCACATCTGGAAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

121

Amino Acids

12.96

Weight (kDa)

4.13

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	63 - 110	2.2e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	69 - 110	8.1e-14	Ring finger domain
zf-RING_11	PF17123	70 - 97	7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	70 - 110	1.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	70 - 110	2.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	70 - 111	2.9e-07	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19910 AT3G19910
fragaria_vesca	FvH4_1g00010
malus_domestica	MD00G1145000.v1.1 MD15G1141500.v1.1
prunus_persica	Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1
pyrus_communis	pycom15g12780 pycom290g00050
rosa_chinensis	RchiOBHm_Chr2g0084221
rosa_laevigata	RLG00000015601
rosa_multiflora	Rmu_sc0003129.1_g000024
rosa_roxburghii	Rroxscaffold_2G00156230
rosa_rugosa	Rorug01G0451900 Rorug01G0451900
rosa_samantha	Rh2AG000200 Rh2BG000100 Rh2CG000100 Rh2DG000200
rosa_wichuraiana	Rw2G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	2 cut(s)	144, 357
AfeI	AGCGCT	1 cut(s)	334
AluBI	AGCT	3 cut(s)	137, 168, 360
AluI	AGCT	3 cut(s)	137, 168, 360
Aor51HI	AGCGCT	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bse3DI	GCAATG	2 cut(s)	152, 205
BseGI	GGATG	1 cut(s)	241
BseMI	GCAATG	2 cut(s)	152, 205
BseMII	CTCAG	4 cut(s)	56, 108, 147, 273
BseRI	GAGGAG	2 cut(s)	68, 98
BseXI	GCAGC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	132
BspCNI	CTCAG	4 cut(s)	55, 109, 146, 274
BsrDI	GCAATG	2 cut(s)	152, 205
Bst4CI	ACNGT	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	42, 117, 133, 282
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	335
CviAII	CATG	2 cut(s)	29, 48
CviJI	RGCY	4 cut(s)	130, 137, 168, 360
CviKI_1	RGCY	4 cut(s)	130, 137, 168, 360
DdeI	CTNAG	4 cut(s)	42, 117, 133, 282
Eco24I	GRGCYC	1 cut(s)	132
Eco47III	AGCGCT	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	144, 357
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	2 cut(s)	32, 51
FaiI	YATR	5 cut(s)	30, 49, 79, 81, 290
FatI	CATG	2 cut(s)	28, 47
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	331
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	361
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	336
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	32, 51
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	45, 189, 283
Hpy188III	TCNNGA	1 cut(s)	351
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	4 cut(s)	95, 264, 288, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
HpyF3I	CTNAG	4 cut(s)	42, 117, 133, 282
Hsp92II	CATG	2 cut(s)	32, 51
HspAI	GCGC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	5 cut(s)	78, 162, 274, 336, 336
Lsp1109I	GCAGC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	361
MaeIII	GTNAC	2 cut(s)	35, 87
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	244, 295
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	91, 204
MnlI	CCTC	7 cut(s)	7, 16, 46, 76, 119, 160, 226
MspA1I	CMGCKG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	327
NdeI	CATATG	1 cut(s)	79
NlaIII	CATG	2 cut(s)	32, 51
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	137
SatI	GCNGC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	4 cut(s)	139, 170, 318, 362
Sse9I	AATT	2 cut(s)	244, 295
SspMI	CTAG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	244, 295
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	2 cut(s)	66, 84
XapI	RAATTY	1 cut(s)	244
XspI	CTAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.