Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0012154

Physical Location & Seq

Genomic Coordinates Reverse (-)

426018 .. 429498

Gene Structure 3481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGGTGAGGGACATGAGATTGCTTTCTTCTTTGGCTTCTAGGGCACATGGTGCTGCTGCACTCCGAATCCTCCCCCTCCCCCTCCCCGACCAAGCCCCCTACAGTCTCAGTCAAATTCAGACAGAAAATGCTTCATTTGAAAATAAACCCAGAATTAGAAAAGCTTCTGCTTCTCACAACATTCGATTTGGCGCTCCCCGTCCTCCCAAACCTACAGGTAATTCTTCTTGTACGCCCAATCCTAATCCTAATTTCGTTTCCATTTCAAACATTCCCATTTCAGCTGGTAATGCCCATCACAACCATAAACCAATTGATCACTCATACATTGTCCAAATTCTTTCACGGAAGGACTGGTTTTTATTGCTCGCCCACGAGTTGAAGGCCATGAGGATCGTTTTGAATCCTCAGTTTGTTGCCAGTGTCTTGCAAAACCAAGAAAACCCATCACTCTCTTTGAAGTTCTACTTATGGGTTTCGAGCATCGACCCCTTGTTCTCAAAGAATCAATCCGTTCGCGGTATCTTAGCCAACACCCTTTACCGGAAAGGCCCCGTTGTGTTGTCTGTTGAATTGCTAAATGATATTAAGAATTCTGGTTTAATGGTCCCAGAAGACTTGCTTTGCATATTGATCGGCAGTTGGGGGAGGTTGGGTTTGGCAAAATATTGTGCTGAGGTTTTTGGGCAAATTTCATTTTTGGGTCTCAGTCTTAGCACAAGGTTGTATAATGCCGTGATCAATGCGTTGGTCAAGTCCAATTCACTTGACTTGGCTTATTTGAAATTCCAACAGATGCCAGCAAATAACTGTCGTCCCGATAGATTCACTTACAATATCCTCATTTATGGAGTCTGCAAGATTGGTATTGTGGATGAGGCACTTCGCTTAGTTAAACAAATGGAGGGCTTGGGATATTTTCCCAATGTTTGGACATATACAATCCTCGTTGATGGGTTTTGTAATACAGAGAGGGTTGGCGAAGCCTTCTGGGTTTTGGAGATAATGAGGGAGGCGAATGTGACTCCTAATGAAGCTACTATCAGATCATTAGTTCATGGGGTGTTTCGTTCCACGGCCCCCACTGAGGCTTTTGAGTTGTTATTGAGTTTTGTTGAAAGGGAGTCTGTATTGTTCAAGGTCGCCTGTGATACCGTACTGTATTGCCTTTCGAATCGTTGTATGGCAAAAGAGATTGTTTTGTTTTTGAAGAAGTCTGATGCAAAAGGTTATTTGCCTGACCGTTCAACATTCAACATCATAATGGTGTGTTTGATAAAGGAATTAGCTTCTTTTCGGAATCAGAACGAGGTCCATGATATATTTCAAAGTTTTATACGGCGTGGTGTGAAACCGGGATTTAGCACTTATCTTGCATTGATTGAAGCCATGTACAAGGCAGGAAAAGCTGGTCAGGGGAATCAAATCTTTGATCAAGTGATCAAAGAGGGGCTTGTATCAAATGTCTTCTCATATAACATGGTAATTGATTGCTTATGCAAAGCCCAAATGTTGGACAGGGCATCAAAGGTTTTTGAAGATATGCAGTGCAAAGGTATCCCTCCTAACCTTGTTACTTTCAATACACTTCTTACCGGATATAGCAAGGCTGGAGAAGTAGGTAAGGCACATGAACTATTGGCAATGCTCTTGGAACATGGGATTAAACCGGATAAGTTCACTTTTAGTTCACTAATTGATGGCCTTTGTCGGGCGAACCAGATAGATGATGCTTTTGACTGTTTGGCTGAGATGGTTAGGTGGAGGGTCACTCCAAATTCCATCACATACAACATACTGATACGCTCTCTGTGTTTTGTTGGAGATATTTCTAGAGCGGTGAGAGTAATGAAGAAAATGCAGGCAAATGGAATAAAACCAGATGCTCACTCGTTTAATGCTCTTATTCAAGGTCTTTGTAGGATGAACAAGGTTGAGAAAGTTGAGGAAGTTTTTCTTGCCATGTTGACATTGGGTTTGAATCCTGACGATTACACATGCAGTGCTTTTATCAAGGCATTGTGCGATTCAGGAAAACTTGATGCAGCAAAGGAGATATTGCTCTCTATGGAAGCATCGGGTTGTTTTCCGGATTCTTCTATTTGTAACATAATTTTAGATTTGCTGGTCCAGAGTGGCCGTGTTGAAGAGGCCTGTCGATCAGTAGCACACAAGGGTGATGGTTTGCGGGATGCACTTCTGGATGAACTGCGTGTTGATGTGTTGGCTCAGAAGACAGGTCGATCAGTAGCACACGAGGGTGATGATTTGTGGGATGCACTTCTGAATGAACTGCATCCTGGGAGGGCATGGGGAGAGTATGGAAATGGGAGGGCAGACAATCCACCTCTGTGTGCATCACTGCTTGGTCTGGCCTCGAAAAATAAAAATCAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009451 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0015980 GO:0016070 GO:0016310 GO:0016787 GO:0016788 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0033993 GO:0034641 GO:0042221 GO:0042773 GO:0042775 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

800

Amino Acids

88.69

Weight (kDa)

8.39

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	228 - 353	6.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	242 - 287	1.1e-11	PPR repeat family
PPR_1	PF12854	270 - 302	5.3e-11	PPR repeat
PPR_2	PF13041	279 - 322	4.1e-11	PPR repeat family
PPR_1	PF12854	305 - 337	2e-08	PPR repeat
TPR_24	PF23276	310 - 373	1.5e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	312 - 355	1.7e-07	PPR repeat family
PPR_3	PF13812	441 - 498	2.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	455 - 501	2.2e-06	PPR repeat family
PPR_long	PF17177	472 - 565	1.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	484 - 516	2.4e-09	PPR repeat
PPR_2	PF13041	488 - 533	1.4e-14	PPR repeat family
PPR	PF01535	490 - 520	2.4e-06	PPR repeat
PPR_3	PF13812	510 - 567	2.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	518 - 547	2.5e-07	PPR repeat
PPR_2	PF13041	522 - 571	2e-15	PPR repeat family
TPR_24	PF23276	524 - 619	7.4e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	554 - 586	1.9e-11	PPR repeat
PPR_2	PF13041	564 - 605	2.6e-14	PPR repeat family
PPR_long	PF17177	573 - 688	2.3e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	582 - 637	6.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	590 - 621	1.2e-08	PPR repeat
PPR_2	PF13041	595 - 641	6.6e-14	PPR repeat family
TPR_24	PF23276	608 - 719	2e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	623 - 652	2e-06	PPR repeat
PPR_2	PF13041	627 - 676	3.4e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16890 AT3G16890
fragaria_vesca	FvH4_5g29230
malus_domestica	MD00G1073300.v1.1
prunus_persica	Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1
pyrus_communis	pycom420g00330
rosa_chinensis	RchiOBHm_Chr7g0221991
rosa_laevigata	RLG00000002105
rosa_multiflora	Rmu_co8447505.1_g000001 Rmu_sc0004325.1_g000020
rosa_roxburghii	Rroxscaffold_3G00237520
rosa_rugosa	Rorug07G0204800
rosa_samantha	Rh7AG345400 Rh7BG335900 Rh7CG362900 Rh7DG343200
rosa_wichuraiana	Rw7G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	930, 1513
AccBSI	CCGCTC	1 cut(s)	1838
AccII	CGCG	1 cut(s)	519
AccIII	TCCGGA	1 cut(s)	2089
AciI	CCGC	3 cut(s)	519, 1838, 2188
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	2137
AcsI	RAATTY	6 cut(s)	114, 336, 592, 690, 785, 1777
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	232, 1158, 1394
AfiI	CCNNNNNNNGG	5 cut(s)	543, 930, 1087, 1513, 1711
AjnI	CCWGG	1 cut(s)	2299
AleI	CACNNNNGTG	3 cut(s)	2175, 2259, 2350
AluBI	AGCT	5 cut(s)	164, 284, 1037, 1289, 1409
AluI	AGCT	5 cut(s)	164, 284, 1037, 1289, 1409
Alw26I	GTCTC	2 cut(s)	110, 710
AlwI	GGATC	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	2089
AoxI	GGCC	7 cut(s)	384, 550, 1077, 1702, 2137, 2151, 2373
ApeKI	GCWGC	3 cut(s)	53, 56, 2045
ApoI	RAATTY	6 cut(s)	114, 336, 592, 690, 785, 1777
ArsI	GACNNNNNNTTYG	2 cut(s)	1960, 1992
Asp700I	GAANNNNTTC	2 cut(s)	163, 1953
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	5 cut(s)	551, 607, 1078, 1312, 2128
AsuC2I	CCSGG	1 cut(s)	1356
AsuHPI	GGTGA	4 cut(s)	16, 1852, 2189, 2273
AsuII	TTCGAA	1 cut(s)	1172
AvaII	GGWCC	3 cut(s)	607, 1312, 2128
BaeGI	GKGCMC	1 cut(s)	46
BauI	CACGAG	2 cut(s)	374, 2255
BbsI	GAAGAC	3 cut(s)	621, 1459, 2240
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	3 cut(s)	40, 43, 2057
BccI	CCATC	7 cut(s)	303, 454, 947, 1694, 1747, 1790, 2174
BceAI	ACGGC	4 cut(s)	719, 1092, 1355, 2124
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	1 cut(s)	2301
BciVI	GTATCC	1 cut(s)	1568
BclI	TGATCA	4 cut(s)	316, 738, 1432, 1440
BcnI	CCSGG	1 cut(s)	1356
BcoDI	GTCTC	2 cut(s)	110, 710
BfaI	CTAG	2 cut(s)	39, 1833
BfmI	CTRYAG	2 cut(s)	100, 213
BfoI	RGCGCY	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	1568
BisI	GCNGC	3 cut(s)	54, 57, 2046
BlsI	GCNGC	3 cut(s)	55, 58, 2047
Bme1390I	CCNGG	2 cut(s)	1356, 2301
Bme18I	GGWCC	3 cut(s)	607, 1312, 2128
BmgT120I	GGNCC	5 cut(s)	551, 607, 1078, 1312, 2128
BmiI	GGNNCC	3 cut(s)	553, 609, 1080
BmrFI	CCNGG	2 cut(s)	1356, 2301
BpiI	GAAGAC	3 cut(s)	621, 1459, 2240
BplI	GAGNNNNNCTC	2 cut(s)	1756, 1788
BpmI	CTGGAG	1 cut(s)	1632
Bpu10I	CCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	1172
BpuMI	CCSGG	1 cut(s)	1356
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	1074, 2300
BsaWI	WCCGGW	4 cut(s)	543, 1595, 1669, 2089
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	5 cut(s)	543, 930, 1087, 1513, 1711
Bse1I	ACTGG	2 cut(s)	359, 420
Bse3DI	GCAATG	1 cut(s)	1650
BseAI	TCCGGA	1 cut(s)	2089
BseBI	CCWGG	1 cut(s)	2301
BseDI	CCNNGG	2 cut(s)	1074, 2300
BseGI	GGATG	6 cut(s)	880, 1929, 2197, 2209, 2281, 2296
BseLI	CCNNNNNNNGG	5 cut(s)	543, 930, 1087, 1513, 1711
BseMI	GCAATG	1 cut(s)	1650
BseMII	CTCAG	7 cut(s)	121, 422, 666, 721, 1077, 1740, 2243
BseNI	ACTGG	2 cut(s)	359, 420
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	40, 43, 2057
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	7 cut(s)	386, 552, 1079, 1704, 2139, 2153, 2375
BsiSI	CCGG	5 cut(s)	544, 1355, 1596, 1670, 2090
BslFI	GGGAC	3 cut(s)	23, 593, 801
BslI	CCNNNNNNNGG	5 cut(s)	543, 930, 1087, 1513, 1711
BsmAI	GTCTC	2 cut(s)	110, 710
BsmFI	GGGAC	3 cut(s)	23, 593, 801
BsnI	GGCC	7 cut(s)	386, 552, 1079, 1704, 2139, 2153, 2375
Bso31I	GGTCTC	1 cut(s)	710
Bsp119I	TTCGAA	1 cut(s)	1172
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	2089
Bsp1407I	TGTACA	1 cut(s)	1392
Bsp143I	GATC	9 cut(s)	316, 393, 633, 738, 1046, 1432, 1440, 2159, 2243
BspACI	CCGC	3 cut(s)	519, 1838, 2188
BspANI	GGCC	7 cut(s)	386, 552, 1079, 1704, 2139, 2153, 2375
BspCNI	CTCAG	7 cut(s)	120, 421, 667, 720, 1078, 1741, 2242
BspEI	TCCGGA	1 cut(s)	2089
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	553, 609, 1080
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	1172
BspTNI	GGTCTC	1 cut(s)	710
BsrBI	CCGCTC	1 cut(s)	1838
BsrDI	GCAATG	1 cut(s)	1650
BsrGI	TGTACA	1 cut(s)	1392
BsrI	ACTGG	2 cut(s)	359, 420
BssECI	CCNNGG	2 cut(s)	1074, 2300
BssMI	GATC	9 cut(s)	316, 393, 633, 738, 1046, 1432, 1440, 2159, 2243
BssSI	CACGAG	2 cut(s)	374, 2255
Bst2BI	CACGAG	2 cut(s)	374, 2255
Bst2UI	CCWGG	1 cut(s)	2301
Bst4CI	ACNGT	6 cut(s)	104, 812, 1156, 1161, 1244, 1742
Bst6I	CTCTTC	1 cut(s)	2142
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	1392
BstBI	TTCGAA	1 cut(s)	1172
BstC8I	GCNNGC	3 cut(s)	369, 801, 1863
BstDSI	CCRYGG	1 cut(s)	1074
BstF5I	GGATG	6 cut(s)	880, 1929, 2197, 2209, 2281, 2296
BstFNI	CGCG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	9 cut(s)	319, 396, 636, 741, 1049, 1435, 1443, 2162, 2246
BstMAI	GTCTC	2 cut(s)	110, 710
BstMBI	GATC	9 cut(s)	316, 393, 633, 738, 1046, 1432, 1440, 2159, 2243
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 50, 290, 1406
BstNI	CCWGG	1 cut(s)	2301
BstNSI	RCATGY	1 cut(s)	2001
BstSCI	CCNGG	2 cut(s)	1354, 2299
BstSFI	CTRYAG	2 cut(s)	100, 213
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	40, 43, 2057
BstV2I	GAAGAC	3 cut(s)	621, 1459, 2240
BsuI	GTATCC	1 cut(s)	1568
BsuRI	GGCC	7 cut(s)	386, 552, 1079, 1704, 2139, 2153, 2375
BtgI	CCRYGG	1 cut(s)	1074
BtsCI	GGATG	6 cut(s)	880, 1929, 2197, 2209, 2281, 2296
BtsI	GCAGTG	3 cut(s)	1553, 2008, 2360
BtsIMutI	CAGTG	5 cut(s)	427, 1083, 1553, 2008, 2360
Cac8I	GCNNGC	3 cut(s)	369, 801, 1863
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	5 cut(s)	551, 607, 1078, 1312, 2128
Csp6I	GTAC	3 cut(s)	231, 1157, 1393
CviQI	GTAC	3 cut(s)	231, 1157, 1393
DpnI	GATC	9 cut(s)	318, 395, 635, 740, 1048, 1434, 1442, 2161, 2245
DpnII	GATC	9 cut(s)	316, 393, 633, 738, 1046, 1432, 1440, 2159, 2243
DraIII	CACNNNGTG	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	2137
Eam1104I	CTCTTC	1 cut(s)	2142
EarI	CTCTTC	1 cut(s)	2142
Eco147I	AGGCCT	1 cut(s)	2153
Eco31I	GGTCTC	1 cut(s)	710
Eco47I	GGWCC	3 cut(s)	607, 1312, 2128
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	2299
FalI	AAGNNNNNCTT	8 cut(s)	452, 484, 606, 638, 1437, 1469, 1941, 1973
FaqI	GGGAC	3 cut(s)	23, 593, 801
FauI	CCCGC	1 cut(s)	2181
FbaI	TGATCA	4 cut(s)	316, 738, 1432, 1440
Fnu4HI	GCNGC	3 cut(s)	54, 57, 2046
FokI	GGATG	6 cut(s)	887, 1936, 2204, 2216, 2283, 2288
Fsp4HI	GCNGC	3 cut(s)	54, 57, 2046
FspBI	CTAG	2 cut(s)	39, 1833
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	3 cut(s)	54, 57, 2046
GsuI	CTGGAG	1 cut(s)	1632
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	7 cut(s)	386, 552, 1079, 1704, 2139, 2153, 2375
HapII	CCGG	5 cut(s)	544, 1355, 1596, 1670, 2090
HhaI	GCGC	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	1968
HindII	GTYRAC	1 cut(s)	1968
HindIII	AAGCTT	1 cut(s)	162
HpaII	CCGG	5 cut(s)	544, 1355, 1596, 1670, 2090
HphI	GGTGA	4 cut(s)	16, 1852, 2189, 2273
Hpy166II	GTNNAC	3 cut(s)	1680, 1691, 1968
Hpy188I	TCNGA	8 cut(s)	65, 120, 1046, 1219, 1299, 1305, 2232, 2286
Hpy188III	TCNNGA	7 cut(s)	818, 1833, 1985, 2031, 2090, 2131, 2201
Hpy8I	GTNNAC	3 cut(s)	1680, 1691, 1968
HpyAV	CCTTC	3 cut(s)	343, 376, 997
HpyCH4III	ACNGT	6 cut(s)	104, 812, 1156, 1161, 1244, 1742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 50, 290, 1406
HspAI	GCGC	1 cut(s)	192
Kpn2I	TCCGGA	1 cut(s)	2089
Ksp22I	TGATCA	4 cut(s)	316, 738, 1432, 1440
Kzo9I	GATC	9 cut(s)	316, 393, 633, 738, 1046, 1432, 1440, 2159, 2243
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	3 cut(s)	40, 43, 2057
MaeI	CTAG	2 cut(s)	39, 1833
MaeIII	GTNAC	4 cut(s)	1021, 1573, 1768, 2105
MalI	GATC	9 cut(s)	318, 395, 635, 740, 1048, 1434, 1442, 2161, 2245
MbiI	CCGCTC	1 cut(s)	1838
MboI	GATC	9 cut(s)	316, 393, 633, 738, 1046, 1432, 1440, 2159, 2243
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	46
MlyI	GAGTC	3 cut(s)	861, 1018, 1133
MmeI	TCCRAC	3 cut(s)	814, 1494, 1801
MroI	TCCGGA	1 cut(s)	2089
MroXI	GAANNNNTTC	2 cut(s)	163, 1953
MseI	TTAA	6 cut(s)	588, 602, 894, 1665, 1896, 2398
MslI	CAYNNNNRTG	5 cut(s)	1262, 1265, 2175, 2259, 2350
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	5 cut(s)	544, 1355, 1596, 1670, 2090
MspR9I	CCNGG	2 cut(s)	1356, 2301
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	2301
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	4 cut(s)	41, 50, 290, 1406
NciI	CCSGG	1 cut(s)	1356
NdeII	GATC	9 cut(s)	316, 393, 633, 738, 1046, 1432, 1440, 2159, 2243
NlaIV	GGNNCC	3 cut(s)	553, 609, 1080
NmuCI	GTSAC	2 cut(s)	1021, 1768
NspI	RCATGY	1 cut(s)	2001
NspV	TTCGAA	1 cut(s)	1172
OliI	CACNNNNGTG	3 cut(s)	2175, 2259, 2350
PceI	AGGCCT	1 cut(s)	2153
PdmI	GAANNNNTTC	2 cut(s)	163, 1953
PflMI	CCANNNNNTGG	2 cut(s)	930, 1513
PkrI	GCNGC	3 cut(s)	55, 58, 2047
PleI	GAGTC	3 cut(s)	860, 1018, 1132
PpsI	GAGTC	3 cut(s)	860, 1018, 1132
Psp6I	CCWGG	1 cut(s)	2299
PspGI	CCWGG	1 cut(s)	2299
PspN4I	GGNNCC	3 cut(s)	553, 609, 1080
PspPI	GGNCC	5 cut(s)	551, 607, 1078, 1312, 2128
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	3 cut(s)	232, 1158, 1394
RsaNI	GTAC	3 cut(s)	231, 1157, 1393
RseI	CAYNNNNRTG	5 cut(s)	1262, 1265, 2175, 2259, 2350
SaqAI	TTAA	6 cut(s)	588, 602, 894, 1665, 1896, 2398
SatI	GCNGC	3 cut(s)	54, 57, 2046
Sau3AI	GATC	9 cut(s)	316, 393, 633, 738, 1046, 1432, 1440, 2159, 2243
Sau96I	GGNCC	5 cut(s)	551, 607, 1078, 1312, 2128
SchI	GAGTC	3 cut(s)	861, 1018, 1133
ScrFI	CCNGG	2 cut(s)	1356, 2301
SduI	GDGCHC	1 cut(s)	46
SfcI	CTRYAG	2 cut(s)	100, 213
SfuI	TTCGAA	1 cut(s)	1172
SinI	GGWCC	3 cut(s)	607, 1312, 2128
SmiMI	CAYNNNNRTG	5 cut(s)	1262, 1265, 2175, 2259, 2350
SseBI	AGGCCT	1 cut(s)	2153
SsiI	CCGC	3 cut(s)	519, 1838, 2188
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	2 cut(s)	39, 1833
StuI	AGGCCT	1 cut(s)	2153
StyD4I	CCNGG	2 cut(s)	1354, 2299
TaaI	ACNGT	6 cut(s)	104, 812, 1156, 1161, 1244, 1742
TaqI	TCGA	7 cut(s)	184, 479, 486, 1172, 2158, 2242, 2378
TatI	WGTACW	1 cut(s)	1392
Tru1I	TTAA	6 cut(s)	588, 602, 894, 1665, 1896, 2398
Tru9I	TTAA	6 cut(s)	588, 602, 894, 1665, 1896, 2398
TscAI	CASTG	5 cut(s)	427, 1090, 1553, 2008, 2367
TseFI	GTSAC	2 cut(s)	1021, 1768
TseI	GCWGC	3 cut(s)	53, 56, 2045
Tsp45I	GTSAC	2 cut(s)	1021, 1768
TspDTI	ATGAA	9 cut(s)	123, 684, 1046, 1047, 1647, 1865, 1940, 2220, 2304
TspGWI	ACGGA	2 cut(s)	361, 502
TspRI	CASTG	5 cut(s)	427, 1090, 1553, 2008, 2367
Van91I	CCANNNNNTGG	2 cut(s)	930, 1513
VpaK11BI	GGWCC	3 cut(s)	607, 1312, 2128
XapI	RAATTY	6 cut(s)	114, 336, 592, 690, 785, 1777
XbaI	TCTAGA	1 cut(s)	1832
XceI	RCATGY	1 cut(s)	2001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1969
XmnI	GAANNNNTTC	2 cut(s)	163, 1953
XspI	CTAG	2 cut(s)	39, 1833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.