Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8447505.1

Orthogroup ID

OG0012154

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 978

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8447505.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 977 bp

atgagatggctttcttctttagcctctagggtctcaccggcactcagaaccctccctcacaaaccctcgccttcttcaaaaatcaaacccagcaagcctctgccttctgctcctcacaaaggtaattactttgagcttcgaaacaatctcatttcagctaagaataccaattttcgtgttgctaataaaccaatcgaccacctctacattgctcgaattctttctcgcaaggactggtttttgttactcgaccacgagttgaatgccagcaggatcgttttgaatcctcaggccgttgctagtgtcttgcaaaaccaagaaaacccattgcaccctttcaagttttcgatatgggtttcgaatattgatcccttgttcttaaagaatcaatcggttcgcagtgttttagccaacacccttttcaggaaaggcccagttgtgttgtctgttgaattgctaaaagatattaacaactcaggtttgaaggtcactgaagatttgctttgcatattgattggtagttgggggaggttgggtttggcaaagtattgtgctgaggtttttgggcaaatttcgtttttgggtcttggtcttagcactaggttgtacaatgctgtgatcgatgcgttagtcaagtccaattcacttgacttggcttatttgaaattccaacagatgcctgcagataattgctatcctgataggttcacttacaatatcctcattcatggagtttgcaagattggtattgtggatgaagctctccgcttagtcaagcaaatggagggcttgggatacttgcctaatgttcgtacttatacaattctggttgatgggttttgtaattcaaggagggttgatgaggcctttggggttatgaagataatgagggataagaatgtgactcctaatgaagctactgtcagatcattggttcatggggtgtttcgttgcatggaccccagtaaggcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009451 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0015980 GO:0016070 GO:0016310 GO:0016787 GO:0016788 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0033993 GO:0034641 GO:0042221 GO:0042773 GO:0042775 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

325

Amino Acids

36.54

Weight (kDa)

9.69

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16890 AT3G16890
fragaria_vesca	FvH4_5g29230
malus_domestica	MD00G1073300.v1.1
prunus_persica	Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1
pyrus_communis	pycom420g00330
rosa_chinensis	RchiOBHm_Chr7g0221991
rosa_laevigata	RLG00000002105
rosa_multiflora	Rmu_co8447505.1_g000001 Rmu_sc0004325.1_g000020
rosa_roxburghii	Rroxscaffold_3G00237520
rosa_rugosa	Rorug07G0204800
rosa_samantha	Rh7AG345400 Rh7BG335900 Rh7CG362900 Rh7DG343200
rosa_wichuraiana	Rw7G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	2 cut(s)	281, 362
AcsI	RAATTY	3 cut(s)	216, 570, 665
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	2 cut(s)	608, 814
AfiI	CCNNNNNNNGG	3 cut(s)	119, 423, 967
AgsI	TTSAA	8 cut(s)	78, 262, 283, 340, 452, 484, 664, 849
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	4 cut(s)	136, 158, 761, 917
AluI	AGCT	4 cut(s)	136, 158, 761, 917
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	281, 362
AoxI	GGCC	3 cut(s)	291, 430, 864
ApoI	RAATTY	3 cut(s)	216, 570, 665
Asp700I	GAANNNNTTC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	431, 958
AsuHPI	GGTGA	1 cut(s)	27
AsuII	TTCGAA	2 cut(s)	139, 359
AvaII	GGWCC	1 cut(s)	958
AxyI	CCTNAGG	1 cut(s)	288
BauI	CACGAG	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	555
BccI	CCATC	1 cut(s)	827
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciVI	GTATCC	1 cut(s)	788
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	3 cut(s)	27, 300, 600
BfmI	CTRYAG	1 cut(s)	681
BfuI	GTATCC	1 cut(s)	788
Bme18I	GGWCC	1 cut(s)	958
BmgT120I	GGNCC	2 cut(s)	431, 958
BmiI	GGNNCC	1 cut(s)	960
BmrI	ACTGGG	2 cut(s)	428, 957
BmsI	GCATC	2 cut(s)	613, 666
BmuI	ACTGGG	2 cut(s)	428, 957
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu14I	TTCGAA	2 cut(s)	139, 359
Bsa29I	ATCGAT	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 423, 967
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	239, 434, 963
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	2 cut(s)	207, 326
BseCI	ATCGAT	1 cut(s)	621
BseGI	GGATG	1 cut(s)	760
BseLI	CCNNNNNNNGG	3 cut(s)	119, 423, 967
BseMI	GCAATG	2 cut(s)	207, 326
BseMII	CTCAG	4 cut(s)	58, 302, 489, 546
BseNI	ACTGG	3 cut(s)	239, 434, 963
BseRI	GAGGAG	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	3 cut(s)	293, 432, 866
BshVI	ATCGAT	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	119, 423, 967
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	293, 432, 866
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	2 cut(s)	139, 359
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	273, 367, 618, 926
BspACI	CCGC	1 cut(s)	766
BspANI	GGCC	3 cut(s)	293, 432, 866
BspCNI	CTCAG	4 cut(s)	57, 301, 488, 547
BspDI	ATCGAT	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	960
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	2 cut(s)	281, 362
BspT104I	TTCGAA	2 cut(s)	139, 359
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	207, 326
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	3 cut(s)	239, 434, 963
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	4 cut(s)	273, 367, 618, 926
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	922
BstAUI	TGTACA	1 cut(s)	606
BstBI	TTCGAA	2 cut(s)	139, 359
BstC8I	GCNNGC	3 cut(s)	95, 268, 681
BstDEI	CTNAG	7 cut(s)	44, 159, 288, 475, 555, 593, 769
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	760
BstKTI	GATC	4 cut(s)	276, 370, 621, 929
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	4 cut(s)	273, 367, 618, 926
BstSFI	CTRYAG	1 cut(s)	681
Bsu15I	ATCGAT	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	3 cut(s)	293, 432, 866
BsuTUI	ATCGAT	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	760
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	406, 489
Cac8I	GCNNGC	3 cut(s)	95, 268, 681
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	431, 958
ClaI	ATCGAT	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	607, 813
CviAII	CATG	3 cut(s)	728, 938, 955
CviQI	GTAC	2 cut(s)	607, 813
DdeI	CTNAG	7 cut(s)	44, 159, 288, 475, 555, 593, 769
DpnI	GATC	4 cut(s)	275, 369, 620, 928
DpnII	GATC	4 cut(s)	273, 367, 618, 926
Eco147I	AGGCCT	1 cut(s)	866
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	216
FaeI	CATG	3 cut(s)	731, 941, 958
FaiI	YATR	7 cut(s)	352, 509, 729, 819, 878, 939, 956
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FatI	CATG	3 cut(s)	727, 937, 954
FokI	GGATG	1 cut(s)	767
FspBI	CTAG	3 cut(s)	27, 300, 600
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	293, 432, 866
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	3 cut(s)	731, 941, 958
HinfI	GANTC	3 cut(s)	283, 385, 904
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	2 cut(s)	47, 926
Hpy188III	TCNNGA	2 cut(s)	424, 698
Hpy8I	GTNNAC	1 cut(s)	708
HpyAV	CCTTC	3 cut(s)	81, 114, 478
HpyCH4III	ACNGT	1 cut(s)	922
HpyCH4V	TGCA	6 cut(s)	310, 331, 507, 683, 738, 954
HpyF3I	CTNAG	7 cut(s)	44, 159, 288, 475, 555, 593, 769
Hsp92II	CATG	3 cut(s)	731, 941, 958
Kzo9I	GATC	4 cut(s)	273, 367, 618, 926
LmnI	GCTCC	1 cut(s)	115
LweI	GCATC	2 cut(s)	613, 666
MaeI	CTAG	3 cut(s)	27, 300, 600
MaeIII	GTNAC	3 cut(s)	243, 487, 901
MalI	GATC	4 cut(s)	275, 369, 620, 928
MboI	GATC	4 cut(s)	273, 367, 618, 926
MboII	GAAGA	4 cut(s)	6, 66, 506, 892
MlyI	GAGTC	1 cut(s)	898
MmeI	TCCRAC	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	2 cut(s)	380, 468
MspI	CCGG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	268
NdeII	GATC	4 cut(s)	273, 367, 618, 926
NlaIII	CATG	3 cut(s)	731, 941, 958
NlaIV	GGNNCC	1 cut(s)	960
NmuCI	GTSAC	2 cut(s)	487, 901
NspV	TTCGAA	2 cut(s)	139, 359
PceI	AGGCCT	1 cut(s)	866
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	283, 385
PleI	GAGTC	1 cut(s)	898
PpsI	GAGTC	1 cut(s)	898
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	960
PspPI	GGNCC	2 cut(s)	431, 958
PstI	CTGCAG	1 cut(s)	685
RsaI	GTAC	2 cut(s)	608, 814
RsaNI	GTAC	2 cut(s)	607, 813
SaqAI	TTAA	2 cut(s)	380, 468
Sau3AI	GATC	4 cut(s)	273, 367, 618, 926
Sau96I	GGNCC	2 cut(s)	431, 958
SchI	GAGTC	1 cut(s)	898
SfaNI	GCATC	2 cut(s)	613, 666
SfcI	CTRYAG	1 cut(s)	681
SfuI	TTCGAA	2 cut(s)	139, 359
SinI	GGWCC	1 cut(s)	958
SseBI	AGGCCT	1 cut(s)	866
SsiI	CCGC	1 cut(s)	766
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	3 cut(s)	27, 300, 600
StuI	AGGCCT	1 cut(s)	866
TaaI	ACNGT	1 cut(s)	922
TaqI	TCGA	7 cut(s)	139, 195, 214, 249, 347, 359, 621
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	2 cut(s)	283, 385
Tru1I	TTAA	2 cut(s)	380, 468
Tru9I	TTAA	2 cut(s)	380, 468
TscAI	CASTG	2 cut(s)	406, 496
TseFI	GTSAC	2 cut(s)	487, 901
Tsp45I	GTSAC	2 cut(s)	487, 901
TspDTI	ATGAA	5 cut(s)	716, 771, 893, 926, 927
TspRI	CASTG	2 cut(s)	406, 496
VpaK11BI	GGWCC	1 cut(s)	958
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	3 cut(s)	216, 570, 665
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	3 cut(s)	27, 300, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.