Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012154

Physical Location & Seq

Genomic Coordinates Reverse (-)

40453449 .. 40457929

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGAGATGGCTTTCTTCTTTAGCCTCTAGGGTCTCACTGGCACTCAGAACCCTCCCTCACAAACCCTCGCCTTCATCAAAAATCAAACCCAGCAAGCCTCTGCCGTCTGCTCCTCACAAAGGTAATTACTTTGAGCTTCGAAACAATCTCATTTCAGCTAAGAATACCAATTTTCGTGTTGCTAATAAACCAATTGATCACCATTACATTGCTCGAATTCTTTCTCGCAAGGACTGGTTTTTGTTACTCGACCACGAGTTGAATGCCAGGAGGATCGTTTTGAATCCTCAGGCCGTTGCTAGTGTCTTGCAAAACCAAGAAAACCCATTGCACCCTTTCAAGTTTTCGATATGGGTTTCGAATATTGATCCCTTGTTCTTAAAGAATCAATCGGTTCGCAGTGTTTTAGCCAACACCCTTTTCAGGAAAGGCCCTGTTGTATTGTCTGTTGAATTGCTAAAAGATATTAACAACTCAGGTTTGAAGGTCACTGAAGATTTGCTTTGCATATTGATTGGTAGTTGGGGGAGGTTGGGTTTGGCAAAGTATTGTGCTGAGGTTTTTGGGCAAATTTCGTTTTTGGGTCTTGGTCTTACCACTAGGTTGTACAATGCTGTGATCGATGCGTTAGTCAAGTCCAATTCACTTGACTCGGCTTATTTGAAATTCCAACAGATGCCTGCAGATAATTGCTATCCTGATAGGTTCACTTACAATATCCTCATTCATGGAGTTTGCAAGATTGGTATTGTGGATGAAGCTCTCCGCTTAGTCAAGCAAATGGAGGGCTTGGGATACTTGCCTAATGTTCGTACTTATACAATTCTGGTTGATGGGTTTTGTAATTCAAGGAGGGTTGATGAGGCCTTTGGGGTTATGAAGATAATGAGGGATAAGAATGTGACTCCTAATGAAGCTACTGTCAGATCATTGGTTCATGGGGTGTTTCGTTGCATGGACCCCAGTAAGGCTTTTGAGCTGTTATTAAGTTTTGTTGAAAGGGAGTCTCTCTTGTTTAAGGTAGCTTGTGATACCATACTGTATTGCCTTTCAATTAACCAGATGGCAAGGGAGATTGCTGTGTTTTTAAAGAAATCTGGTGCGAAAGGTTATTTGCCTGACAGTTCAACATTCAACATCGCAATGGTTTGTTTGACAAAGGAATCAGCTCATCCTCAGCATGACGTACATGATATATTTGAAAGTTTTATACATCGAGGTGGAAAACCAGGATTTGGTACTTATCTTGCATTAATTGAAGCTATGTACAAGTCCGGAAACCTTGATGAGGGGAATCAAATCTTTGAGCAAATGATCAAGGATGGACTTGTATCTAGTGTCTTCTCATATAACATGGTAATTGATTGCTTTTGCAAAGCCCAAATTATGCACATGGCATCAAAGGCTTTTGGAGATATGCAGCAGAAAGGTATTCCTCCTAACCTTGTAACATTCAATACACTTCTTACCGGATATTGCAAGGCTGGAGAGGTAAGTAAGGCACATGAACTGTTAATAATGCTCCTAGAACATGGTTTCAAACCGGATATATTCACTTTTAGTACAATAATTGACGGACTCTGTCGGGTGCACAAGATTGATGACGCTTTCGATTGTTTTGCTGAGATGGTCAGGTGGGGGATCACTCCAAATGTCATCACATACAATATATTGTTACGCTCTTTGTGTTTCGTCGGAGATAATGCTAGAGTGCGACTAATGAAAAGTATGCAGGTAGATGGAATAAAACCAGATGCTTACTCTTTCAGTTATCTTATTCAAAGTCTTTGTAGGATGAACAAGGTTGAGAAAGCAGAGGAATTTTTTCTTGCTATGTTGAGATCAGGTTTGAATCCTGACAATTATACATACAGTGTTTTTATCAAGGCATTGTGTGACTTGGGAAGACTTGACGTGGCAAAGGAGATATTCCTCTCTATGGAAGCATATGATTGTTTACCCGATTCTTCTATTTGCAATGTAATGTTGGATTCTCTGGTTCAGCATAACCGTTTTGAAGAGGCCTGTAGAATAGTAAAAAGTTTTGTCAGGAGGAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009451 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0015980 GO:0016070 GO:0016310 GO:0016787 GO:0016788 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0033993 GO:0034641 GO:0042221 GO:0042773 GO:0042775 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

687

Amino Acids

77.58

Weight (kDa)

8.82

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	202 - 247	1.2e-11	PPR repeat family
PPR_long	PF17177	203 - 331	1.8e-12	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	230 - 262	1e-11	PPR repeat
PPR_2	PF13041	238 - 282	2.4e-13	PPR repeat family
PPR_1	PF12854	265 - 297	2.4e-10	PPR repeat
TPR_24	PF23276	272 - 328	2.2e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	278 - 315	7.1e-07	PPR repeat family
PPR_2	PF13041	414 - 459	1.8e-08	PPR repeat family
PPR_long	PF17177	426 - 506	3.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	446 - 491	2.5e-12	PPR repeat family
PPR_3	PF13812	471 - 524	1.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	476 - 505	1.4e-10	PPR repeat
PPR_2	PF13041	480 - 529	3.3e-16	PPR repeat family
PPR	PF01535	483 - 513	1.6e-06	PPR repeat
PPR_3	PF13812	510 - 560	3.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	512 - 544	2.4e-10	PPR repeat
PPR_2	PF13041	521 - 563	1.3e-15	PPR repeat family
PPR_long	PF17177	531 - 636	2.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	580 - 609	2e-07	PPR repeat
PPR_2	PF13041	592 - 633	3.4e-12	PPR repeat family
PPR_1	PF12854	616 - 648	8.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16890 AT3G16890
fragaria_vesca	FvH4_5g29230
malus_domestica	MD00G1073300.v1.1
prunus_persica	Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1
pyrus_communis	pycom420g00330
rosa_chinensis	RchiOBHm_Chr7g0221991
rosa_laevigata	RLG00000002105
rosa_multiflora	Rmu_co8447505.1_g000001 Rmu_sc0004325.1_g000020
rosa_roxburghii	Rroxscaffold_3G00237520
rosa_rugosa	Rorug07G0204800
rosa_samantha	Rh7AG345400 Rh7BG335900 Rh7CG362900 Rh7DG343200
rosa_wichuraiana	Rw7G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1723
AccB7I	CCANNNNNTGG	1 cut(s)	1235
AccIII	TCCGGA	1 cut(s)	1274
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	3 cut(s)	281, 362, 1649
AcsI	RAATTY	4 cut(s)	216, 570, 665, 1820
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	6 cut(s)	608, 814, 1188, 1240, 1268, 1564
AfiI	CCNNNNNNNGG	6 cut(s)	119, 423, 967, 1235, 1288, 1939
AjiI	CACGTC	1 cut(s)	1915
AjnI	CCWGG	2 cut(s)	266, 1228
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	8 cut(s)	136, 158, 761, 917, 979, 1025, 1169, 1262
AluI	AGCT	8 cut(s)	136, 158, 761, 917, 979, 1025, 1169, 1262
Alw21I	GWGCWC	1 cut(s)	1593
Alw26I	GTCTC	2 cut(s)	37, 1011
Alw44I	GTGCAC	1 cut(s)	1589
AlwI	GGATC	3 cut(s)	281, 362, 1649
Aor13HI	TCCGGA	1 cut(s)	1274
AoxI	GGCC	4 cut(s)	291, 430, 864, 2022
ApaLI	GTGCAC	1 cut(s)	1589
ApeKI	GCWGC	1 cut(s)	1420
ApoI	RAATTY	4 cut(s)	216, 570, 665, 1820
AseI	ATTAAT	1 cut(s)	1253
Asp700I	GAANNNNTTC	2 cut(s)	220, 1824
AspS9I	GGNCC	2 cut(s)	431, 958
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	2 cut(s)	139, 359
AvaII	GGWCC	1 cut(s)	958
AxyI	CCTNAGG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	1593
BauI	CACGAG	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	1333, 1912
Bbv12I	GWGCWC	1 cut(s)	1593
BbvCI	CCTCAGC	2 cut(s)	555, 1176
BbvI	GCAGC	1 cut(s)	1432
BccI	CCATC	5 cut(s)	827, 1057, 1316, 1621, 1733
BceAI	ACGGC	2 cut(s)	88, 278
BcgI	CGANNNNNNTGC	4 cut(s)	245, 279, 1601, 1635
BciT130I	CCWGG	2 cut(s)	268, 1230
BciVI	GTATCC	1 cut(s)	788
BclI	TGATCA	2 cut(s)	196, 1314
BcoDI	GTCTC	2 cut(s)	37, 1011
BfaI	CTAG	6 cut(s)	27, 300, 600, 1335, 1526, 1707
BfmI	CTRYAG	2 cut(s)	681, 2026
BfuAI	ACCTGC	1 cut(s)	1723
BfuI	GTATCC	1 cut(s)	788
BisI	GCNGC	1 cut(s)	1421
BlsI	GCNGC	1 cut(s)	1422
Bme1390I	CCNGG	2 cut(s)	268, 1230
Bme18I	GGWCC	1 cut(s)	958
BmgBI	CACGTC	1 cut(s)	1915
BmgT120I	GGNCC	2 cut(s)	431, 958
BmiI	GGNNCC	1 cut(s)	960
BmrFI	CCNGG	2 cut(s)	268, 1230
BmrI	ACTGGG	1 cut(s)	957
BmsI	GCATC	4 cut(s)	613, 666, 1406, 1744
BmuI	ACTGGG	1 cut(s)	957
BpiI	GAAGAC	2 cut(s)	1333, 1912
BpmI	CTGGAG	1 cut(s)	1506
Bpu10I	CCTNAGC	2 cut(s)	555, 1176
Bpu14I	TTCGAA	2 cut(s)	139, 359
Bsa29I	ATCGAT	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	37
BsaWI	WCCGGW	3 cut(s)	1274, 1469, 1543
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bsc4I	CCNNNNNNNGG	6 cut(s)	119, 423, 967, 1235, 1288, 1939
Bse1I	ACTGG	3 cut(s)	42, 239, 963
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	4 cut(s)	207, 326, 1149, 1984
BseAI	TCCGGA	1 cut(s)	1274
BseBI	CCWGG	2 cut(s)	268, 1230
BseCI	ATCGAT	1 cut(s)	621
BseGI	GGATG	4 cut(s)	760, 1171, 1327, 1800
BseLI	CCNNNNNNNGG	6 cut(s)	119, 423, 967, 1235, 1288, 1939
BseMI	GCAATG	4 cut(s)	207, 326, 1149, 1984
BseMII	CTCAG	6 cut(s)	58, 302, 489, 546, 1190, 1614
BseNI	ACTGG	3 cut(s)	42, 239, 963
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	1593
BseXI	GCAGC	1 cut(s)	1432
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	4 cut(s)	293, 432, 866, 2024
BshVI	ATCGAT	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	1593
BsiSI	CCGG	3 cut(s)	1275, 1470, 1544
BslI	CCNNNNNNNGG	6 cut(s)	119, 423, 967, 1235, 1288, 1939
BsmAI	GTCTC	2 cut(s)	37, 1011
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	293, 432, 866, 2024
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	2 cut(s)	139, 359
Bsp1286I	GDGCHC	1 cut(s)	1593
Bsp13I	TCCGGA	1 cut(s)	1274
Bsp1407I	TGTACA	2 cut(s)	606, 1266
Bsp143I	GATC	8 cut(s)	196, 273, 367, 618, 926, 1314, 1641, 1841
BspACI	CCGC	1 cut(s)	766
BspANI	GGCC	4 cut(s)	293, 432, 866, 2024
BspCNI	CTCAG	6 cut(s)	57, 301, 488, 547, 1189, 1615
BspDI	ATCGAT	1 cut(s)	621
BspEI	TCCGGA	1 cut(s)	1274
BspLI	GGNNCC	1 cut(s)	960
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	1723
BspPI	GGATC	3 cut(s)	281, 362, 1649
BspT104I	TTCGAA	2 cut(s)	139, 359
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	4 cut(s)	207, 326, 1149, 1984
BsrGI	TGTACA	2 cut(s)	606, 1266
BsrI	ACTGG	3 cut(s)	42, 239, 963
BssMI	GATC	8 cut(s)	196, 273, 367, 618, 926, 1314, 1641, 1841
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	2 cut(s)	268, 1230
Bst4CI	ACNGT	6 cut(s)	922, 1041, 1124, 1512, 1874, 2012
Bst6I	CTCTTC	1 cut(s)	2013
BstAUI	TGTACA	2 cut(s)	606, 1266
BstBI	TTCGAA	2 cut(s)	139, 359
BstC8I	GCNNGC	2 cut(s)	95, 681
BstDEI	CTNAG	8 cut(s)	44, 159, 288, 475, 555, 769, 1176, 1623
BstENI	CCTNNNNNAGG	2 cut(s)	117, 1286
BstF5I	GGATG	4 cut(s)	760, 1171, 1327, 1800
BstKTI	GATC	8 cut(s)	199, 276, 370, 621, 929, 1317, 1644, 1844
BstMAI	GTCTC	2 cut(s)	37, 1011
BstMBI	GATC	8 cut(s)	196, 273, 367, 618, 926, 1314, 1641, 1841
BstMWI	GCNNNNNNNGC	1 cut(s)	1403
BstNI	CCWGG	2 cut(s)	268, 1230
BstSCI	CCNGG	2 cut(s)	266, 1228
BstSFI	CTRYAG	2 cut(s)	681, 2026
BstSLI	GKGCMC	1 cut(s)	1593
BstV1I	GCAGC	1 cut(s)	1432
BstV2I	GAAGAC	2 cut(s)	1333, 1912
Bsu15I	ATCGAT	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	4 cut(s)	293, 432, 866, 2024
BsuTUI	ATCGAT	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	1123
BtrI	CACGTC	1 cut(s)	1915
BtsCI	GGATG	4 cut(s)	760, 1171, 1327, 1800
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	4 cut(s)	35, 406, 489, 1879
BveI	ACCTGC	1 cut(s)	1723
Cac8I	GCNNGC	2 cut(s)	95, 681
Cfr13I	GGNCC	2 cut(s)	431, 958
ClaI	ATCGAT	1 cut(s)	621
CseI	GACGC	1 cut(s)	1613
Csp6I	GTAC	6 cut(s)	607, 813, 1187, 1239, 1267, 1563
CviAII	CATG	9 cut(s)	728, 938, 955, 1181, 1190, 1354, 1393, 1505, 1532
CviQI	GTAC	6 cut(s)	607, 813, 1187, 1239, 1267, 1563
DdeI	CTNAG	8 cut(s)	44, 159, 288, 475, 555, 769, 1176, 1623
DpnI	GATC	8 cut(s)	198, 275, 369, 620, 928, 1316, 1643, 1843
DpnII	GATC	8 cut(s)	196, 273, 367, 618, 926, 1314, 1641, 1841
DraI	TTTAAA	1 cut(s)	1089
Eam1104I	CTCTTC	1 cut(s)	2013
EarI	CTCTTC	1 cut(s)	2013
Eco147I	AGGCCT	2 cut(s)	866, 2024
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	2 cut(s)	117, 1286
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	266, 1228
FaeI	CATG	9 cut(s)	731, 941, 958, 1184, 1193, 1357, 1396, 1508, 1535
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FatI	CATG	9 cut(s)	727, 937, 954, 1180, 1189, 1353, 1392, 1504, 1531
FauNDI	CATATG	1 cut(s)	1948
FbaI	TGATCA	2 cut(s)	196, 1314
Fnu4HI	GCNGC	1 cut(s)	1421
FokI	GGATG	4 cut(s)	767, 1158, 1334, 1807
Fsp4HI	GCNGC	1 cut(s)	1421
FspBI	CTAG	6 cut(s)	27, 300, 600, 1335, 1526, 1707
GluI	GCNGC	1 cut(s)	1421
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	1506
HaeIII	GGCC	4 cut(s)	293, 432, 866, 2024
HapII	CCGG	3 cut(s)	1275, 1470, 1544
HgaI	GACGC	1 cut(s)	1613
Hin1II	CATG	9 cut(s)	731, 941, 958, 1184, 1193, 1357, 1396, 1508, 1535
HpaII	CCGG	3 cut(s)	1275, 1470, 1544
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	3 cut(s)	708, 1591, 1958
Hpy188I	TCNGA	3 cut(s)	47, 926, 1697
Hpy188III	TCNNGA	5 cut(s)	424, 698, 1275, 1856, 2050
Hpy8I	GTNNAC	3 cut(s)	708, 1591, 1958
Hpy99I	CGWCG	1 cut(s)	1697
HpyAV	CCTTC	2 cut(s)	81, 478
HpyCH4III	ACNGT	6 cut(s)	922, 1041, 1124, 1512, 1874, 2012
HpyCH4IV	ACGT	2 cut(s)	1185, 1914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1403
HpyF3I	CTNAG	8 cut(s)	44, 159, 288, 475, 555, 769, 1176, 1623
HpySE526I	ACGT	2 cut(s)	1185, 1914
Hsp92II	CATG	9 cut(s)	731, 941, 958, 1184, 1193, 1357, 1396, 1508, 1535
Kpn2I	TCCGGA	1 cut(s)	1274
Ksp22I	TGATCA	2 cut(s)	196, 1314
Kzo9I	GATC	8 cut(s)	196, 273, 367, 618, 926, 1314, 1641, 1841
LmnI	GCTCC	2 cut(s)	115, 1527
Lsp1109I	GCAGC	1 cut(s)	1432
LweI	GCATC	4 cut(s)	613, 666, 1406, 1744
MaeI	CTAG	6 cut(s)	27, 300, 600, 1335, 1526, 1707
MaeII	ACGT	2 cut(s)	1185, 1914
MaeIII	GTNAC	6 cut(s)	243, 487, 901, 1447, 1674, 1895
MalI	GATC	8 cut(s)	198, 275, 369, 620, 928, 1316, 1643, 1843
MboI	GATC	8 cut(s)	196, 273, 367, 618, 926, 1314, 1641, 1841
MboII	GAAGA	7 cut(s)	6, 506, 892, 1333, 1917, 1959, 2030
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	1593
MlyI	GAGTC	4 cut(s)	644, 898, 1013, 1572
MmeI	TCCRAC	3 cut(s)	694, 1675, 1968
MroI	TCCGGA	1 cut(s)	1274
MroXI	GAANNNNTTC	2 cut(s)	220, 1824
MseI	TTAA	8 cut(s)	380, 468, 986, 1017, 1056, 1088, 1253, 1514
MslI	CAYNNNNRTG	2 cut(s)	1142, 1218
MspI	CCGG	3 cut(s)	1275, 1470, 1544
MspR9I	CCNGG	2 cut(s)	268, 1230
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	2 cut(s)	268, 1230
MwoI	GCNNNNNNNGC	1 cut(s)	1403
NdeI	CATATG	1 cut(s)	1948
NdeII	GATC	8 cut(s)	196, 273, 367, 618, 926, 1314, 1641, 1841
NlaIII	CATG	9 cut(s)	731, 941, 958, 1184, 1193, 1357, 1396, 1508, 1535
NlaIV	GGNNCC	1 cut(s)	960
NmeAIII	GCCGAG	1 cut(s)	632
NmuCI	GTSAC	3 cut(s)	487, 901, 1895
NspV	TTCGAA	2 cut(s)	139, 359
PceI	AGGCCT	2 cut(s)	866, 2024
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	2 cut(s)	220, 1824
PfeI	GAWTC	7 cut(s)	283, 385, 1163, 1294, 1852, 1964, 1991
PflFI	GACNNNGTC	1 cut(s)	1581
PflMI	CCANNNNNTGG	1 cut(s)	1235
PkrI	GCNGC	1 cut(s)	1422
PleI	GAGTC	4 cut(s)	644, 898, 1012, 1572
PpsI	GAGTC	4 cut(s)	644, 898, 1012, 1572
PshBI	ATTAAT	1 cut(s)	1253
Psp6I	CCWGG	2 cut(s)	266, 1228
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	266, 1228
PspN4I	GGNNCC	1 cut(s)	960
PspPI	GGNCC	2 cut(s)	431, 958
PstI	CTGCAG	1 cut(s)	685
PsyI	GACNNNGTC	1 cut(s)	1581
RsaI	GTAC	6 cut(s)	608, 814, 1188, 1240, 1268, 1564
RsaNI	GTAC	6 cut(s)	607, 813, 1187, 1239, 1267, 1563
RseI	CAYNNNNRTG	2 cut(s)	1142, 1218
SaqAI	TTAA	8 cut(s)	380, 468, 986, 1017, 1056, 1088, 1253, 1514
SatI	GCNGC	1 cut(s)	1421
Sau3AI	GATC	8 cut(s)	196, 273, 367, 618, 926, 1314, 1641, 1841
Sau96I	GGNCC	2 cut(s)	431, 958
SchI	GAGTC	4 cut(s)	644, 898, 1013, 1572
ScrFI	CCNGG	2 cut(s)	268, 1230
SduI	GDGCHC	1 cut(s)	1593
SfaNI	GCATC	4 cut(s)	613, 666, 1406, 1744
SfcI	CTRYAG	2 cut(s)	681, 2026
SfuI	TTCGAA	2 cut(s)	139, 359
SinI	GGWCC	1 cut(s)	958
SmiMI	CAYNNNNRTG	2 cut(s)	1142, 1218
SseBI	AGGCCT	2 cut(s)	866, 2024
SsiI	CCGC	1 cut(s)	766
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	6 cut(s)	27, 300, 600, 1335, 1526, 1707
StuI	AGGCCT	2 cut(s)	866, 2024
StyD4I	CCNGG	2 cut(s)	266, 1228
TaaI	ACNGT	6 cut(s)	922, 1041, 1124, 1512, 1874, 2012
TaiI	ACGT	2 cut(s)	1188, 1917
TaqI	TCGA	8 cut(s)	139, 214, 249, 347, 359, 621, 1216, 1611
TatI	WGTACW	3 cut(s)	606, 1266, 1562
TfiI	GAWTC	7 cut(s)	283, 385, 1163, 1294, 1852, 1964, 1991
Tru1I	TTAA	8 cut(s)	380, 468, 986, 1017, 1056, 1088, 1253, 1514
Tru9I	TTAA	8 cut(s)	380, 468, 986, 1017, 1056, 1088, 1253, 1514
TscAI	CASTG	4 cut(s)	42, 406, 496, 1879
TseFI	GTSAC	3 cut(s)	487, 901, 1895
TseI	GCWGC	1 cut(s)	1420
Tsp45I	GTSAC	3 cut(s)	487, 901, 1895
TspDTI	ATGAA	9 cut(s)	63, 716, 771, 893, 926, 927, 1521, 1736, 1811
TspGWI	ACGGA	1 cut(s)	1590
TspRI	CASTG	4 cut(s)	42, 406, 496, 1879
Tth111I	GACNNNGTC	1 cut(s)	1581
Van91I	CCANNNNNTGG	1 cut(s)	1235
VneI	GTGCAC	1 cut(s)	1589
VpaK11BI	GGWCC	1 cut(s)	958
VspI	ATTAAT	1 cut(s)	1253
XagI	CCTNNNNNAGG	2 cut(s)	117, 1286
XapI	RAATTY	4 cut(s)	216, 570, 665, 1820
XmnI	GAANNNNTTC	2 cut(s)	220, 1824
XspI	CTAG	6 cut(s)	27, 300, 600, 1335, 1526, 1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.