Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012154

Physical Location & Seq

Genomic Coordinates Reverse (-)

34969463 .. 34988786

Gene Structure 19324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

ATGAGATGGCTTTCTTCTTTAGCCTCTAGGGTCTCACCTGCACTCAGAACCCTCCCTCACAAACCCTCGCCTTCATCAAAAATCAAACCCAGCAAGCCTCTGCCTTCTGCTCCTCACAAAGGTAATTACTTTGAGCTTCGAAACAATCTCATTTCAGCTAAGAATACCAATTTTCGAGTTGCTAATAAACCAATCGACCACCTCTACATTGCTCGAATTCTTTCTCGCAAGGACTGGTTTTTGTTACTCGACCACGAGTTGAATGCCAGGAGGATCGTTTTGAATCCTCAGTCTGTTGCTAGTGTCTTGCAAAACCAAGAAAACCCATTGCACCCTTTCAAGTTTTCGATATGGGTTTCGAATATTGATCCCTTGTTCTTAAAGAATCATTCGGTTCGCAGTGTTTTAGCCAACACCCTTTTCAGGAAAGGCCCAGTTGTGTTGTCTGTTGAATTGCTAAAAGATATTAACAACTCAGGTTTGAAGGTCACTGAAGATTTGCTTTGCATATTAATTGGTAGTTGGGGGAGGTTGGGTTTGGCAAAGTATTGTGCTGAGGTTTTTGGGCAAATTTCGTTTTTGGGTCTTGGTCCTAGCACTAGGTTGTACAATGCTGTGATCGATGCGTTAGTCAAGTCCAATTCACTTGACTTGGCTTATTTGAAATTCCAACAGATGCCTGCAGATAATTGCTATCCTGATAGGTTCACTTACAATATCCTTATTCATGGAGTTTGCAAGATTGGTATTGCGGATGAAGCTCTTCGTTTAGTCAAGCAAATGGAGGGCTTGGGATATTTGCCTAATGTTCGTACTTATACAATTCTGGTTGATGGGTTTTGTAATTCAAGGAGGGTTGATGAGGCCTTCGGGGTTATGAAGATAATGAAGGATAAGAATGTGACTCCTAATGAAGCTACTGTCAGATCATTGGTTCATGGGGTGTTTCGTTGCATGGACCCCAGTAAGGGTTTTGAGTTGTTATTAAGTTTTGTTGAAAGGGAGTCTCTCTTGTTTAAGGAATCAGCTCATCCTCGGCATGAGGTACATGAAATATTTGAAAGTTTTTTACATCGAGGTGGAAAACCAGGATTTGGTTCTTATCTTGCATTAATTGAAGCTATGTACAAGTCTGGAAACGTTGATGAGGGGAATCAAATCTTTGAGCAAATGATCAAGGATGGACTTGTATCTAGTGTCTTCTCATATAACATGGTAATTGATTGCCTTTGCAAAGCCCAAATTATGGACATGGCATCAAAGGCCTTTGGAGATATGCAGCAGAAAGATATTCCTCCTAACCTTGTAACATTCAATACACTTCTTACCGGATATTGCAAGGCTGGAGAGGCATTGTGTGACTTGGGAAGACTTGACGTGGCAAAGGAGATATTCCTCTCTATGGAAGCATATGATTGTTTACCCGATTCTTCTATTTGCAATGTAATGTTGGATTCTCTGGTTCAGCATAACCGTTTTGAAGAGGCCTGTAGAATAAATGAACTGCATCCTGAGTATGTTGCAAGAGACTTCAATTCATCTCCTGGAACACTTAACAAGACCAGTTCATCTGCACTCCCGACGACTGGAATCCGACCTATTCTCTATCCAAATGCAGTAAAATATAAAAGGTCTCGGGTTGAGGAGCGATGGGAGCGTTTAGTCGGTGCAGTATTATGTTGGAAAGGACAGGAATCAACTTATGAAAATGGGAGCCATGGTACTAGCATTGATGCAAACCTTCAATCTCCATGGCTTGCTAATTGGAAAGTTCAGGAAATCCTGAAAGTTGCTGATGAAATCCAACATAACGATCCCATTGTCAGTAGAATCTTATGCGAGCACGGTTATGTATTGGCACAGTATTTGAATTCTAATAGCGAAGGAAGGGGAGTACTAAAATTCAAGATTGGATTGATGTGTGTCTTGAAGATAAAGCAAGCAAAGAGGGGGAATGAAACTGTGGATAGAAACCAAGACTTTCTTGCCTTACAGAAGTTCTATAAACTTTATAGAGAGAAGAATAATGTAGAAAAGCTGCGGGAGGAAGAAATGAAGTTGAGGGAATCTGGGTCTGTCTGTGGAAACCTGGGGAAGTTGGAGAGAAAAACAAGTATAAGGAAAAGAGTTTCTGCAACTCTAAGAATTCTGGAGACAGTATTGGAGCAGCTGGAGGAAACTCCCGAAGAGCAGCTGGAGGAAACCCCCGAAGAGCAGCTGGAGGAAACTCCCGAGGAGCAGCTGGAGGAAACCCCCGAAGAGCAGCTGGAGGAAACTCCCGAAGAGCAGCTGGAGGGAACTCCCGAAGAGAAAACATCTCGAGTTGAGGAGCATGGTACTTGCGATATTGGAAAAACATCCCGAGTTGAGGAGCGATGGGAGCGTATAGTCCATGCAGTACTAAAACGGGAAAGGATGGGAACTGATGCATACAGGCAGCATGGTACAGGCATTGTTGGAAAAGTTCGATCTTCATTTGCAATTAGCAGGGTTTTAAATAAAATTTGGGAAGCTGCAGATGAAATTGGAGATGAAAATCTTAGTGTCTCTAGAATCTTATGTGAGCAGGGTTATTCATTGGCTCAAGATCTGGATTCTGATAGTGAAGGAAAGGGAGTATTACAGTTTAAGGCTGGTCTGATGAGTGTCATTAAGGGAACCCGATCCAAGAGGAGAAGTGCAACCGCAACCATAGATAGAAGTGAAGACTTTGTTCTATTACAACAGTTCTATAAACTTTATAGGGAGAAGAATAATGTCGAAAAGCTGCTGGAGGAAAAAATGAAGTTGAGGGAGTGTAGTACTTCTTCCAGTGACAACCATAGAGAGTTCCAGATAATAGCACGGACGAGAAGAGTTTTTGCAACTCTTACAGCTTTGCGGACCGTTTTGGAGATGCACTCGAAGCAGGATGATACGCAGGAAATTCCTCAAGAGGTTGATTTTATTCTGCGTGTGAATTTTGTTTTCTTCTTCCTGGACCAAGCTTGTTTGCACTTCAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009451 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0015980 GO:0016070 GO:0016310 GO:0016787 GO:0016788 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0033993 GO:0034641 GO:0042221 GO:0042773 GO:0042775 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1002

Amino Acids

114.04

Weight (kDa)

6.52

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	198 - 247	8.8e-12	PPR repeat family
PPR_long	PF17177	205 - 329	1.4e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	230 - 262	3e-10	PPR repeat
PPR_2	PF13041	236 - 282	1.2e-13	PPR repeat family
PPR_1	PF12854	265 - 297	3.5e-10	PPR repeat
PPR_2	PF13041	276 - 315	1.2e-07	PPR repeat family
PPR_2	PF13041	367 - 412	3.1e-08	PPR repeat family
PPR_2	PF13041	399 - 447	7.8e-14	PPR repeat family
PPR_1	PF12854	430 - 450	8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16890 AT3G16890
fragaria_vesca	FvH4_5g29230
malus_domestica	MD00G1073300.v1.1
prunus_persica	Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1
pyrus_communis	pycom420g00330
rosa_chinensis	RchiOBHm_Chr7g0221991
rosa_laevigata	RLG00000002105
rosa_multiflora	Rmu_co8447505.1_g000001 Rmu_sc0004325.1_g000020
rosa_roxburghii	Rroxscaffold_3G00237520
rosa_rugosa	Rorug07G0204800
rosa_samantha	Rh7AG345400 Rh7BG335900 Rh7CG362900 Rh7DG343200
rosa_wichuraiana	Rw7G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
AccB7I	CCANNNNNTGG	2 cut(s)	1094, 1246
AciI	CCGC	4 cut(s)	752, 2041, 2685, 2881
AclI	AACGTT	1 cut(s)	1140
AclWI	GGATC	4 cut(s)	281, 362, 1808, 2658
AcsI	RAATTY	9 cut(s)	216, 570, 665, 1870, 1901, 2145, 2502, 2925, 2959
AcuI	CTGAAG	1 cut(s)	513
AfiI	CCNNNNNNNGG	9 cut(s)	119, 423, 967, 968, 1094, 1246, 1402, 1586, 2368
AjiI	CACGTC	1 cut(s)	1378
AjnI	CCWGG	5 cut(s)	266, 1087, 1543, 2088, 2976
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
Alw21I	GWGCWC	1 cut(s)	1845
Alw26I	GTCTC	6 cut(s)	37, 1011, 1521, 1638, 2147, 2551
AlwI	GGATC	4 cut(s)	281, 362, 1808, 2658
Ama87I	CYCGRG	4 cut(s)	1635, 2231, 2319, 2361
AoxI	GGCC	4 cut(s)	430, 864, 1263, 1485
ApoI	RAATTY	9 cut(s)	216, 570, 665, 1870, 1901, 2145, 2502, 2925, 2959
AseI	ATTAAT	2 cut(s)	512, 1112
Asp700I	GAANNNNTTC	2 cut(s)	220, 762
AspS9I	GGNCC	5 cut(s)	431, 590, 958, 2883, 2980
AsuHPI	GGTGA	1 cut(s)	27
AsuII	TTCGAA	2 cut(s)	139, 359
AvaI	CYCGRG	4 cut(s)	1635, 2231, 2319, 2361
AvaII	GGWCC	4 cut(s)	590, 958, 2883, 2980
BarI	GAAGNNNNNNTAC	2 cut(s)	2791, 2823
BauI	CACGAG	1 cut(s)	254
BbsI	GAAGAC	3 cut(s)	1192, 1375, 2712
Bbv12I	GWGCWC	1 cut(s)	1845
BbvCI	CCTCAGC	1 cut(s)	555
BccI	CCATC	5 cut(s)	827, 1175, 1644, 2370, 2410
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	5 cut(s)	268, 1089, 1545, 2090, 2978
BclI	TGATCA	1 cut(s)	1173
BcoDI	GTCTC	6 cut(s)	37, 1011, 1521, 1638, 2147, 2551
BfaI	CTAG	7 cut(s)	27, 300, 594, 600, 1194, 1725, 2550
BfmI	CTRYAG	3 cut(s)	681, 1489, 2514
BfuAI	ACCTGC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	2587
BmcAI	AGTACT	3 cut(s)	1896, 2400, 2803
Bme1390I	CCNGG	5 cut(s)	268, 1089, 1545, 2090, 2978
Bme18I	GGWCC	4 cut(s)	590, 958, 2883, 2980
BmeT110I	CYCGRG	4 cut(s)	1635, 2231, 2319, 2361
BmgBI	CACGTC	1 cut(s)	1378
BmgT120I	GGNCC	5 cut(s)	431, 590, 958, 2883, 2980
BmiI	GGNNCC	3 cut(s)	960, 1715, 2659
BmrFI	CCNGG	5 cut(s)	268, 1089, 1545, 2090, 2978
BmrI	ACTGGG	2 cut(s)	428, 957
BmsI	GCATC	7 cut(s)	613, 666, 1265, 1516, 1723, 2416, 2886
BmuI	ACTGGG	2 cut(s)	428, 957
BpiI	GAAGAC	3 cut(s)	1192, 1375, 2712
BplI	GAGNNNNNCTC	2 cut(s)	2885, 2917
BpmI	CTGGAG	9 cut(s)	1365, 2171, 2192, 2216, 2240, 2264, 2288, 2312, 2792
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu14I	TTCGAA	2 cut(s)	139, 359
BpuEI	CTTGAG	2 cut(s)	2568, 2916
Bsa29I	ATCGAT	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	2535
BsaI	GGTCTC	2 cut(s)	37, 1638
BsaJI	CCNNGG	5 cut(s)	1034, 1717, 1751, 2089, 2232
BsaWI	WCCGGW	1 cut(s)	1328
BsaXI	ACNNNNNCTCC	4 cut(s)	520, 550, 1705, 1735
Bsc4I	CCNNNNNNNGG	9 cut(s)	119, 423, 967, 968, 1094, 1246, 1402, 1586, 2368
Bse1I	ACTGG	6 cut(s)	239, 434, 963, 1563, 1591, 2811
Bse3DI	GCAATG	3 cut(s)	207, 326, 1447
Bse8I	GATNNNNATC	1 cut(s)	2535
BseBI	CCWGG	5 cut(s)	268, 1089, 1545, 2090, 2978
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	5 cut(s)	1034, 1717, 1751, 2089, 2232
BseGI	GGATG	7 cut(s)	760, 1030, 1186, 1507, 2357, 2421, 2917
BseJI	GATNNNNATC	1 cut(s)	2535
BseLI	CCNNNNNNNGG	9 cut(s)	119, 423, 967, 968, 1094, 1246, 1402, 1586, 2368
BseMI	GCAATG	3 cut(s)	207, 326, 1447
BseMII	CTCAG	5 cut(s)	58, 302, 489, 546, 1503
BseNI	ACTGG	6 cut(s)	239, 434, 963, 1563, 1591, 2811
BseRI	GAGGAG	6 cut(s)	102, 1658, 2249, 2342, 2384, 2686
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	3 cut(s)	24, 1557, 1689
BshFI	GGCC	4 cut(s)	432, 866, 1265, 1487
BshVI	ATCGAT	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	1845
BsiHKCI	CYCGRG	4 cut(s)	1635, 2231, 2319, 2361
BsiSI	CCGG	1 cut(s)	1329
BslI	CCNNNNNNNGG	9 cut(s)	119, 423, 967, 968, 1094, 1246, 1402, 1586, 2368
BsmAI	GTCTC	6 cut(s)	37, 1011, 1521, 1638, 2147, 2551
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	432, 866, 1265, 1487
Bso31I	GGTCTC	2 cut(s)	37, 1638
BsoBI	CYCGRG	4 cut(s)	1635, 2231, 2319, 2361
Bsp119I	TTCGAA	2 cut(s)	139, 359
Bsp1286I	GDGCHC	1 cut(s)	1845
Bsp1407I	TGTACA	2 cut(s)	606, 1125
Bsp143I	GATC	9 cut(s)	273, 367, 618, 926, 1173, 1813, 2468, 2587, 2663
Bsp19I	CCATGG	2 cut(s)	1717, 1751
BspACI	CCGC	4 cut(s)	752, 2041, 2685, 2881
BspANI	GGCC	4 cut(s)	432, 866, 1265, 1487
BspCNI	CTCAG	5 cut(s)	57, 301, 488, 547, 1504
BspDI	ATCGAT	1 cut(s)	621
BspLI	GGNNCC	3 cut(s)	960, 1715, 2659
BspMAI	CTGCAG	2 cut(s)	685, 2518
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	4 cut(s)	281, 362, 1808, 2658
BspQI	GCTCTTC	5 cut(s)	768, 2181, 2205, 2253, 2277
BspT104I	TTCGAA	2 cut(s)	139, 359
BspTNI	GGTCTC	2 cut(s)	37, 1638
BsrDI	GCAATG	3 cut(s)	207, 326, 1447
BsrGI	TGTACA	2 cut(s)	606, 1125
BsrI	ACTGG	6 cut(s)	239, 434, 963, 1563, 1591, 2811
BssECI	CCNNGG	5 cut(s)	1034, 1717, 1751, 2089, 2232
BssMI	GATC	9 cut(s)	273, 367, 618, 926, 1173, 1813, 2468, 2587, 2663
BssSI	CACGAG	1 cut(s)	254
BssT1I	CCWWGG	2 cut(s)	1717, 1751
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	5 cut(s)	268, 1089, 1545, 2090, 2978
Bst4CI	ACNGT	9 cut(s)	922, 1475, 1847, 1863, 1963, 2158, 2625, 2727, 2887
Bst6I	CTCTTC	8 cut(s)	768, 1476, 2181, 2205, 2253, 2277, 2301, 2848
BstAUI	TGTACA	2 cut(s)	606, 1125
BstBI	TTCGAA	2 cut(s)	139, 359
BstC8I	GCNNGC	5 cut(s)	95, 681, 1758, 1841, 1941
BstDEI	CTNAG	8 cut(s)	44, 159, 288, 475, 555, 1512, 2141, 2540
BstDSI	CCRYGG	2 cut(s)	1717, 1751
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	7 cut(s)	760, 1030, 1186, 1507, 2357, 2421, 2917
BstKTI	GATC	9 cut(s)	276, 370, 621, 929, 1176, 1816, 2471, 2590, 2666
BstMAI	GTCTC	6 cut(s)	37, 1011, 1521, 1638, 2147, 2551
BstMBI	GATC	9 cut(s)	273, 367, 618, 926, 1173, 1813, 2468, 2587, 2663
BstMWI	GCNNNNNNNGC	6 cut(s)	758, 1262, 1349, 1654, 2380, 2905
BstNI	CCWGG	5 cut(s)	268, 1089, 1545, 2090, 2978
BstSCI	CCNGG	5 cut(s)	266, 1087, 1543, 2088, 2976
BstSFI	CTRYAG	3 cut(s)	681, 1489, 2514
BstV2I	GAAGAC	3 cut(s)	1192, 1375, 2712
BstX2I	RGATCY	1 cut(s)	2587
BstYI	RGATCY	1 cut(s)	2587
Bsu15I	ATCGAT	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	432, 866, 1265, 1487
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	2 cut(s)	1717, 1751
BtgZI	GCGATG	2 cut(s)	1663, 2389
BtrI	CACGTC	1 cut(s)	1378
BtsCI	GGATG	7 cut(s)	760, 1030, 1186, 1507, 2357, 2421, 2917
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	3 cut(s)	406, 489, 2818
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	5 cut(s)	95, 681, 1758, 1841, 1941
Cfr13I	GGNCC	5 cut(s)	431, 590, 958, 2883, 2980
ClaI	ATCGAT	1 cut(s)	621
CpoI	CGGWCCG	1 cut(s)	2883
CspI	CGGWCCG	1 cut(s)	2883
DdeI	CTNAG	8 cut(s)	44, 159, 288, 475, 555, 1512, 2141, 2540
DpnI	GATC	9 cut(s)	275, 369, 620, 928, 1175, 1815, 2470, 2589, 2665
DpnII	GATC	9 cut(s)	273, 367, 618, 926, 1173, 1813, 2468, 2587, 2663
DraI	TTTAAA	1 cut(s)	2496
Eam1104I	CTCTTC	8 cut(s)	768, 1476, 2181, 2205, 2253, 2277, 2301, 2848
EarI	CTCTTC	8 cut(s)	768, 1476, 2181, 2205, 2253, 2277, 2301, 2848
Eco130I	CCWWGG	2 cut(s)	1717, 1751
Eco147I	AGGCCT	3 cut(s)	866, 1265, 1487
Eco31I	GGTCTC	2 cut(s)	37, 1638
Eco47I	GGWCC	4 cut(s)	590, 958, 2883, 2980
Eco57I	CTGAAG	1 cut(s)	513
Eco88I	CYCGRG	4 cut(s)	1635, 2231, 2319, 2361
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoRI	GAATTC	3 cut(s)	216, 1870, 2145
EcoRII	CCWGG	5 cut(s)	266, 1087, 1543, 2088, 2976
EcoT14I	CCWWGG	2 cut(s)	1717, 1751
EcoT22I	ATGCAT	1 cut(s)	2431
ErhI	CCWWGG	2 cut(s)	1717, 1751
FalI	AAGNNNNNCTT	4 cut(s)	486, 518, 1968, 2000
FauI	CCCGC	1 cut(s)	2034
FauNDI	CATATG	1 cut(s)	1411
FbaI	TGATCA	1 cut(s)	1173
FokI	GGATG	7 cut(s)	767, 1017, 1193, 1494, 2344, 2428, 2924
FspBI	CTAG	7 cut(s)	27, 300, 594, 600, 1194, 1725, 2550
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	9 cut(s)	1365, 2171, 2192, 2216, 2240, 2264, 2288, 2312, 2792
HaeIII	GGCC	4 cut(s)	432, 866, 1265, 1487
HapII	CCGG	1 cut(s)	1329
HindIII	AAGCTT	1 cut(s)	2985
HpaII	CCGG	1 cut(s)	1329
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	708, 1421
Hpy188I	TCNGA	5 cut(s)	47, 926, 1595, 2599, 2640
Hpy8I	GTNNAC	2 cut(s)	708, 1421
Hpy99I	CGWCG	1 cut(s)	1585
HpyAV	CCTTC	9 cut(s)	81, 114, 478, 877, 883, 1751, 1877, 1881, 2600
HpyCH4III	ACNGT	9 cut(s)	922, 1475, 1847, 1863, 1963, 2158, 2625, 2727, 2887
HpyCH4IV	ACGT	2 cut(s)	1140, 1377
HpyF10VI	GCNNNNNNNGC	6 cut(s)	758, 1262, 1349, 1654, 2380, 2905
HpyF3I	CTNAG	8 cut(s)	44, 159, 288, 475, 555, 1512, 2141, 2540
HpySE526I	ACGT	2 cut(s)	1140, 1377
Ksp22I	TGATCA	1 cut(s)	1173
Kzo9I	GATC	9 cut(s)	273, 367, 618, 926, 1173, 1813, 2468, 2587, 2663
LguI	GCTCTTC	5 cut(s)	768, 2181, 2205, 2253, 2277
LmnI	GCTCC	9 cut(s)	115, 1645, 1654, 1713, 2164, 2236, 2329, 2371, 2380
LweI	GCATC	7 cut(s)	613, 666, 1265, 1516, 1723, 2416, 2886
MaeI	CTAG	7 cut(s)	27, 300, 594, 600, 1194, 1725, 2550
MaeII	ACGT	2 cut(s)	1140, 1377
MaeIII	GTNAC	6 cut(s)	243, 487, 901, 1306, 1358, 2813
MalI	GATC	9 cut(s)	275, 369, 620, 928, 1175, 1815, 2470, 2589, 2665
MboI	GATC	9 cut(s)	273, 367, 618, 926, 1173, 1813, 2468, 2587, 2663
MflI	RGATCY	1 cut(s)	2587
MhlI	GDGCHC	1 cut(s)	1845
MlyI	GAGTC	2 cut(s)	898, 1013
MmeI	TCCRAC	7 cut(s)	694, 1431, 1618, 1661, 1828, 2079, 2437
Mph1103I	ATGCAT	1 cut(s)	2431
MroXI	GAANNNNTTC	2 cut(s)	220, 762
MslI	CAYNNNNRTG	2 cut(s)	1077, 1848
MspA1I	CMGCKG	6 cut(s)	2170, 2194, 2218, 2242, 2266, 2290
MspI	CCGG	1 cut(s)	1329
MspR9I	CCNGG	5 cut(s)	268, 1089, 1545, 2090, 2978
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	5 cut(s)	268, 1089, 1545, 2090, 2978
MwoI	GCNNNNNNNGC	6 cut(s)	758, 1262, 1349, 1654, 2380, 2905
NcoI	CCATGG	2 cut(s)	1717, 1751
NdeI	CATATG	1 cut(s)	1411
NdeII	GATC	9 cut(s)	273, 367, 618, 926, 1173, 1813, 2468, 2587, 2663
NlaIV	GGNNCC	3 cut(s)	960, 1715, 2659
NmeAIII	GCCGAG	1 cut(s)	1015
NmuCI	GTSAC	4 cut(s)	487, 901, 1358, 2813
NsiI	ATGCAT	1 cut(s)	2431
NspV	TTCGAA	2 cut(s)	139, 359
PaeR7I	CTCGAG	1 cut(s)	2319
PaqCI	CACCTGC	1 cut(s)	46
PceI	AGGCCT	3 cut(s)	866, 1265, 1487
PciSI	GCTCTTC	5 cut(s)	768, 2181, 2205, 2253, 2277
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	2 cut(s)	220, 762
PflMI	CCANNNNNTGG	2 cut(s)	1094, 1246
PfoI	TCCNGGA	2 cut(s)	1543, 2976
PleI	GAGTC	2 cut(s)	898, 1012
PpsI	GAGTC	2 cut(s)	898, 1012
PshBI	ATTAAT	2 cut(s)	512, 1112
Psp1406I	AACGTT	1 cut(s)	1140
Psp6I	CCWGG	5 cut(s)	266, 1087, 1543, 2088, 2976
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	5 cut(s)	266, 1087, 1543, 2088, 2976
PspN4I	GGNNCC	3 cut(s)	960, 1715, 2659
PspPI	GGNCC	5 cut(s)	431, 590, 958, 2883, 2980
PstI	CTGCAG	2 cut(s)	685, 2518
PsuI	RGATCY	1 cut(s)	2587
PvuII	CAGCTG	6 cut(s)	2170, 2194, 2218, 2242, 2266, 2290
RseI	CAYNNNNRTG	2 cut(s)	1077, 1848
Rsr2I	CGGWCCG	1 cut(s)	2883
RsrII	CGGWCCG	1 cut(s)	2883
SapI	GCTCTTC	5 cut(s)	768, 2181, 2205, 2253, 2277
Sau3AI	GATC	9 cut(s)	273, 367, 618, 926, 1173, 1813, 2468, 2587, 2663
Sau96I	GGNCC	5 cut(s)	431, 590, 958, 2883, 2980
ScaI	AGTACT	3 cut(s)	1896, 2400, 2803
SchI	GAGTC	2 cut(s)	898, 1013
ScrFI	CCNGG	5 cut(s)	268, 1089, 1545, 2090, 2978
SduI	GDGCHC	1 cut(s)	1845
SfaNI	GCATC	7 cut(s)	613, 666, 1265, 1516, 1723, 2416, 2886
SfcI	CTRYAG	3 cut(s)	681, 1489, 2514
Sfr274I	CTCGAG	1 cut(s)	2319
SfuI	TTCGAA	2 cut(s)	139, 359
SinI	GGWCC	4 cut(s)	590, 958, 2883, 2980
SlaI	CTCGAG	1 cut(s)	2319
SmiMI	CAYNNNNRTG	2 cut(s)	1077, 1848
SmlI	CTYRAG	3 cut(s)	2319, 2583, 2931
SmoI	CTYRAG	3 cut(s)	2319, 2583, 2931
SseBI	AGGCCT	3 cut(s)	866, 1265, 1487
SsiI	CCGC	4 cut(s)	752, 2041, 2685, 2881
SspI	AATATT	2 cut(s)	364, 1056
SspMI	CTAG	7 cut(s)	27, 300, 594, 600, 1194, 1725, 2550
StuI	AGGCCT	3 cut(s)	866, 1265, 1487
StyD4I	CCNGG	5 cut(s)	266, 1087, 1543, 2088, 2976
StyI	CCWWGG	2 cut(s)	1717, 1751
TaaI	ACNGT	9 cut(s)	922, 1475, 1847, 1863, 1963, 2158, 2625, 2727, 2887
TaiI	ACGT	2 cut(s)	1143, 1380
TatI	WGTACW	5 cut(s)	606, 1125, 1894, 2398, 2801
TscAI	CASTG	3 cut(s)	406, 496, 2818
TseFI	GTSAC	4 cut(s)	487, 901, 1358, 2813
Tsp45I	GTSAC	4 cut(s)	487, 901, 1358, 2813
TspGWI	ACGGA	1 cut(s)	2860
TspRI	CASTG	3 cut(s)	406, 496, 2818
Van91I	CCANNNNNTGG	2 cut(s)	1094, 1246
VpaK11BI	GGWCC	4 cut(s)	590, 958, 2883, 2980
VspI	ATTAAT	2 cut(s)	512, 1112
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	9 cut(s)	216, 570, 665, 1870, 1901, 2145, 2502, 2925, 2959
XbaI	TCTAGA	1 cut(s)	2549
XhoI	CTCGAG	1 cut(s)	2319
XmnI	GAANNNNTTC	2 cut(s)	220, 762
XspI	CTAG	7 cut(s)	27, 300, 594, 600, 1194, 1725, 2550
ZrmI	AGTACT	3 cut(s)	1896, 2400, 2803
Zsp2I	ATGCAT	1 cut(s)	2431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.