Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012154

Physical Location & Seq

Genomic Coordinates Reverse (-)

17971025 .. 17971791

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTAGATCCTTTGGGGGACTTTGAATTTATGGTGGTCGATATTGGTGGTGTTCTTACAATTTCAAATTCACAGGCCCATGTCATGGAAGAAATGGTCATTTCAACGACCATTGGTATGGATGGAATTTCACTTGCCTCCAAAGAGGCAGCTATTGAAGAGTCATCTGTCATTATTTTTCTTGTTGATGGCCAGGGTGAGATCATAATTTTGATTGAAGAATTAGGAAAGAATTGGTGGGATAAATTTCGTGTTGATACGTCACCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009451 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0015980 GO:0016070 GO:0016310 GO:0016787 GO:0016788 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0033993 GO:0034641 GO:0042221 GO:0042773 GO:0042775 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

90

Amino Acids

9.89

Weight (kDa)

4.07

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16890 AT3G16890
fragaria_vesca	FvH4_5g29230
malus_domestica	MD00G1073300.v1.1
prunus_persica	Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1 Prupe.1G002300_v2.0.a1
pyrus_communis	pycom420g00330
rosa_chinensis	RchiOBHm_Chr7g0221991
rosa_laevigata	RLG00000002105
rosa_multiflora	Rmu_co8447505.1_g000001 Rmu_sc0004325.1_g000020
rosa_roxburghii	Rroxscaffold_3G00237520
rosa_rugosa	Rorug07G0204800
rosa_samantha	Rh7AG345400 Rh7BG335900 Rh7CG362900 Rh7DG343200
rosa_wichuraiana	Rw7G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AclWI	GGATC	1 cut(s)	2
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	4 cut(s)	26, 67, 126, 245
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	5 cut(s)	26, 66, 105, 158, 218
AjnI	CCWGG	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	268
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	2 cut(s)	75, 190
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	4 cut(s)	26, 67, 126, 245
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	209, 255
BalI	TGGCCA	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	2 cut(s)	116, 182
BciT130I	CCWGG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	193, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	193, 266
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	2 cut(s)	77, 192
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	77, 192
Bsp143I	GATC	2 cut(s)	7, 201
BspANI	GGCC	2 cut(s)	77, 192
BspPI	GGATC	1 cut(s)	2
BssECI	CCNNGG	2 cut(s)	193, 266
BssMI	GATC	2 cut(s)	7, 201
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	10, 204
BstMBI	GATC	2 cut(s)	7, 201
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	77, 192
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	2 cut(s)	80, 85
CviJI	RGCY	3 cut(s)	77, 152, 192
CviKI_1	RGCY	3 cut(s)	77, 152, 192
DpnI	GATC	2 cut(s)	9, 203
DpnII	GATC	2 cut(s)	7, 201
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	83, 88
FaiI	YATR	5 cut(s)	32, 81, 86, 119, 206
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	79, 84
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	77, 192
Hin1II	CATG	2 cut(s)	83, 88
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	2 cut(s)	209, 255
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	83, 88
Kzo9I	GATC	2 cut(s)	7, 201
LpnPI	CCDG	3 cut(s)	59, 179, 206
Lsp1109I	GCAGC	1 cut(s)	161
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	2 cut(s)	9, 203
MboI	GATC	2 cut(s)	7, 201
MboII	GAAGA	3 cut(s)	101, 170, 230
MflI	RGATCY	1 cut(s)	7
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	8 cut(s)	26, 60, 67, 126, 207, 221, 232, 245
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	139, 148
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MslI	CAYNNNNRTG	2 cut(s)	116, 268
Msp20I	TGGCCA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	7, 201
NlaIII	CATG	2 cut(s)	83, 88
NmuCI	GTSAC	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	116, 268
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	7, 201
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	2 cut(s)	154, 263
SgeI	CNNG	8 cut(s)	86, 92, 97, 146, 194, 205, 206, 263
SmiMI	CAYNNNNRTG	2 cut(s)	116, 268
Sse9I	AATT	8 cut(s)	26, 60, 67, 126, 207, 221, 232, 245
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	39
TasI	AATT	8 cut(s)	26, 60, 67, 126, 207, 221, 232, 245
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	85
XapI	RAATTY	4 cut(s)	26, 67, 126, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.