Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0005480

Physical Location & Seq

Genomic Coordinates Reverse (-)

808438 .. 809660

Gene Structure 1223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g00660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGACATTGGCTGGTTTTGATGGTTTGCGAATTCAGTGTTCTGATCAGAGTGTTCTTTTCCTCAGTGATGGGTCTGACGATGGTATGGTGCCTCCCGGGTCACTTTGCATGATCTCGCACAAGGATAAGGAGGTGATGAATGCTTTGGATGGTGCTGGTTCTCAAGCAACTGAAGAAGAGGTTCGGCAAGAGGTGGTTGCAATGTCTCACACTAACATATTCAGCCCTGGGATTGATGTGACTCAGGCAGTACTTTTACCTCAGATGACCTGGAGGTGGCAGGAGAAAACAGAAATGGCTGCCCTATCAAATCTAGAAGAGTCCCCTGGGGCTATGACTGATGACGAGCTCTTCTCATCCTGCAATGAAAATGAAACAGAACGTGAGCAGTTTAATGATATTCTGACAGAGGATGAGACGAGGCAACCTGAAAATGCACTTAAATTGGATTCGTCAGAATTGTCAAACGAAAATGGTGATGAGATTATTGAGCATCGTCATAGTTGTTATGATCACAGGGAGATTCGTATTGAAGATGTTAGCAGTGGTAGAAATGGAGAGAATAAGCAGGAAAAGAAAGGATGGTTTGGTGGATGGAGGAAATGGGGTACTAAAAATGAAGGGCAGAAAAAGATTGTGCCGCCTGAAGTTCTCTGTGTAGATGAGAAGAGTAATGTGGACATTATTGTGAAGGGTGATGATCACCGGAGAGGAAGGGATATGAAAGCATCTTCTTCCACAAGTTCTGATAAGAGGAATCGTCACAAGGGTGCTAGCAAGGAGAATGAGTATAAGAAGGGATCGAGGCCAATACTCTGGCTTTCCCCAAACTTTCCATTACAAACAGAGGAACTGTTGCTGTTACTTGACATTTTAGCAAACAAGGTTAAGGCAATTCGTCGTTTGAGGGAGCTGCTTACAACCAAACTTCCAATGGGTACATTTCCAGTCAAGGTATGCCACCTTCCCATTATCATTTTGTTACCCAGTATGGTTTATGGTTTCCTAGATGCACCTTTGTTATCTTTTCCTTTTTATCAAACTTGTTCAGAAAACATTTTGTTATTTTCTTTTTTAACCATGCCTGGTTCTGTTGTAACTGTAAGAGTAGGATGTGCTCTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_5 GPCR_chapero_1

Protein Analysis

376

Amino Acids

42.1

Weight (kDa)

5.12

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04780
fragaria_vesca	FvH4_4g00280 FvH4_4g00280 FvH4_4g00280 FvH4_4g00280
malus_domestica	MD04G1002900.v1.1 MD13G1285000.v1.1
prunus_persica	Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1
pyrus_communis	pycom04g00300 pycom420g00660
rosa_chinensis	RchiOBHm_Chr4g0385121
rosa_laevigata	RLG00000010209 RLG00000010228 RLG00000010256
rosa_multiflora	Rmu_ssc0000158.1_g000038
rosa_roxburghii	Rroxscaffold_5G00333030 Rroxscaffold_5G00364810
rosa_rugosa	Rorug03G0299200 Rorug03G0299300 Rorug03G0299300
rosa_samantha	Rh4AG002800 Rh4BG002300 Rh4CG003100 Rh4DG002600
rosa_wichuraiana	Rw4G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	1 cut(s)	641
AclWI	GGATC	1 cut(s)	808
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	192, 666
AfaI	GTAC	3 cut(s)	252, 610, 940
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	533
AjnI	CCWGG	4 cut(s)	226, 269, 325, 1084
AleI	CACNNNNGTG	1 cut(s)	768
AluBI	AGCT	2 cut(s)	349, 913
AluI	AGCT	2 cut(s)	349, 913
Alw21I	GWGCWC	2 cut(s)	351, 1120
Alw26I	GTCTC	2 cut(s)	210, 410
AlwI	GGATC	1 cut(s)	808
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	806
ApeKI	GCWGC	2 cut(s)	299, 913
ApoI	RAATTY	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	180
AsuC2I	CCSGG	2 cut(s)	96, 97
AsuHPI	GGTGA	4 cut(s)	145, 488, 695, 707
AsuNHI	GCTAGC	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	351
BarI	GAAGNNNNNNTAC	2 cut(s)	948, 980
Bbv12I	GWGCWC	2 cut(s)	351, 1120
BbvI	GCAGC	2 cut(s)	286, 900
BccI	CCATC	6 cut(s)	14, 62, 74, 143, 576, 588
BciT130I	CCWGG	4 cut(s)	228, 271, 327, 1086
BclI	TGATCA	3 cut(s)	43, 511, 700
BcnI	CCSGG	2 cut(s)	96, 97
BcoDI	GTCTC	2 cut(s)	210, 410
BfaI	CTAG	3 cut(s)	314, 774, 1007
BisI	GCNGC	3 cut(s)	300, 641, 914
BlsI	GCNGC	3 cut(s)	301, 642, 915
BmcAI	AGTACT	1 cut(s)	252
Bme1390I	CCNGG	6 cut(s)	96, 97, 228, 271, 327, 1086
BmeT110I	CYCGRG	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	6 cut(s)	96, 97, 228, 271, 327, 1086
BmrI	ACTGGG	1 cut(s)	981
BmsI	GCATC	3 cut(s)	502, 737, 1000
BmtI	GCTAGC	1 cut(s)	777
BmuI	ACTGGG	1 cut(s)	981
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	147
BpuMI	CCSGG	2 cut(s)	96, 97
BsaJI	CCNNGG	5 cut(s)	95, 226, 227, 325, 326
BsaWI	WCCGGW	1 cut(s)	705
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	947, 987
Bse3DI	GCAATG	2 cut(s)	207, 370
BseBI	CCWGG	4 cut(s)	228, 271, 327, 1086
BseDI	CCNNGG	5 cut(s)	95, 226, 227, 325, 326
BseGI	GGATG	6 cut(s)	154, 356, 418, 587, 599, 1118
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	2 cut(s)	207, 370
BseMII	CTCAG	3 cut(s)	76, 257, 275
BseNI	ACTGG	2 cut(s)	947, 987
BseXI	GCAGC	2 cut(s)	286, 900
BshFI	GGCC	1 cut(s)	808
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	351, 1120
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	96, 706
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	210, 410
BsmBI	CGTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	808
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	351, 1120
Bsp143I	GATC	5 cut(s)	43, 111, 511, 700, 800
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	1 cut(s)	808
BspCNI	CTCAG	3 cut(s)	75, 256, 274
BspLI	GGNNCC	1 cut(s)	90
BspOI	GCTAGC	1 cut(s)	777
BspPI	GGATC	1 cut(s)	808
BspQI	GCTCTTC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	88
BsrDI	GCAATG	2 cut(s)	207, 370
BsrI	ACTGG	2 cut(s)	947, 987
BssECI	CCNNGG	5 cut(s)	95, 226, 227, 325, 326
BssMI	GATC	5 cut(s)	43, 111, 511, 700, 800
Bst2UI	CCWGG	4 cut(s)	228, 271, 327, 1086
Bst4CI	ACNGT	2 cut(s)	855, 1102
Bst6I	CTCTTC	4 cut(s)	171, 312, 356, 662
BstC8I	GCNNGC	1 cut(s)	775
BstDEI	CTNAG	3 cut(s)	62, 243, 261
BstF5I	GGATG	6 cut(s)	154, 356, 418, 587, 599, 1118
BstKTI	GATC	5 cut(s)	46, 114, 514, 703, 803
BstMAI	GTCTC	2 cut(s)	210, 410
BstMBI	GATC	5 cut(s)	43, 111, 511, 700, 800
BstNI	CCWGG	4 cut(s)	228, 271, 327, 1086
BstSCI	CCNGG	6 cut(s)	94, 95, 226, 269, 325, 1084
BstV1I	GCAGC	2 cut(s)	286, 900
BstXI	CCANNNNNNTGG	1 cut(s)	816
BsuRI	GGCC	1 cut(s)	808
BtsCI	GGATG	6 cut(s)	154, 356, 418, 587, 599, 1118
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	3 cut(s)	41, 70, 550
Cac8I	GCNNGC	1 cut(s)	775
Cfr9I	CCCGGG	1 cut(s)	95
Csp6I	GTAC	3 cut(s)	251, 609, 939
CviAII	CATG	2 cut(s)	109, 1081
CviJI	RGCY	8 cut(s)	11, 225, 299, 332, 349, 808, 820, 913
CviKI_1	RGCY	8 cut(s)	11, 225, 299, 332, 349, 808, 820, 913
CviQI	GTAC	3 cut(s)	251, 609, 939
DdeI	CTNAG	3 cut(s)	62, 243, 261
DpnI	GATC	5 cut(s)	45, 113, 513, 702, 802
DpnII	GATC	5 cut(s)	43, 111, 511, 700, 800
Eam1104I	CTCTTC	4 cut(s)	171, 312, 356, 662
EarI	CTCTTC	4 cut(s)	171, 312, 356, 662
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	192, 666
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	30
EcoRII	CCWGG	4 cut(s)	226, 269, 325, 1084
EcoT38I	GRGCYC	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	2 cut(s)	112, 1084
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	2 cut(s)	108, 1080
FbaI	TGATCA	3 cut(s)	43, 511, 700
Fnu4HI	GCNGC	3 cut(s)	300, 641, 914
FokI	GGATG	5 cut(s)	161, 343, 425, 594, 606
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	300, 641, 914
FspBI	CTAG	3 cut(s)	314, 774, 1007
GluI	GCNGC	3 cut(s)	300, 641, 914
GsuI	CTGGAG	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	808
HapII	CCGG	2 cut(s)	96, 706
Hin1II	CATG	2 cut(s)	112, 1084
HinfI	GANTC	5 cut(s)	241, 320, 449, 523, 757
HpaII	CCGG	2 cut(s)	96, 706
HphI	GGTGA	4 cut(s)	145, 488, 695, 707
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	8 cut(s)	43, 48, 76, 264, 405, 457, 748, 1051
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	1 cut(s)	903
HpyAV	CCTTC	5 cut(s)	614, 685, 708, 790, 974
HpyCH4III	ACNGT	2 cut(s)	855, 1102
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	5 cut(s)	108, 200, 363, 437, 1013
HpyF3I	CTNAG	3 cut(s)	62, 243, 261
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	112, 1084
Ksp22I	TGATCA	3 cut(s)	43, 511, 700
Kzo9I	GATC	5 cut(s)	43, 111, 511, 700, 800
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	910
Lsp1109I	GCAGC	2 cut(s)	286, 900
LweI	GCATC	3 cut(s)	502, 737, 1000
MaeI	CTAG	3 cut(s)	314, 774, 1007
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	6 cut(s)	99, 238, 761, 861, 981, 1096
MalI	GATC	5 cut(s)	45, 113, 513, 702, 802
MboI	GATC	5 cut(s)	43, 111, 511, 700, 800
MboII	GAAGA	8 cut(s)	185, 188, 329, 343, 545, 679, 723, 726
MhlI	GDGCHC	2 cut(s)	351, 1120
MluCI	AATT	4 cut(s)	30, 443, 458, 894
MlyI	GAGTC	2 cut(s)	235, 329
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	4 cut(s)	393, 441, 888, 1076
MslI	CAYNNNNRTG	2 cut(s)	686, 768
MspI	CCGG	2 cut(s)	96, 706
MspR9I	CCNGG	6 cut(s)	96, 97, 228, 271, 327, 1086
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	4 cut(s)	228, 271, 327, 1086
NciI	CCSGG	2 cut(s)	96, 97
NdeII	GATC	5 cut(s)	43, 111, 511, 700, 800
NheI	GCTAGC	1 cut(s)	773
NlaIII	CATG	2 cut(s)	112, 1084
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	3 cut(s)	99, 238, 761
OliI	CACNNNNGTG	1 cut(s)	768
PasI	CCCWGGG	2 cut(s)	227, 326
PciSI	GCTCTTC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	449, 523, 757
PkrI	GCNGC	3 cut(s)	301, 642, 915
PleI	GAGTC	2 cut(s)	235, 328
PpsI	GAGTC	2 cut(s)	235, 328
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	4 cut(s)	226, 269, 325, 1084
PspGI	CCWGG	4 cut(s)	226, 269, 325, 1084
PspN4I	GGNNCC	1 cut(s)	90
RsaI	GTAC	3 cut(s)	252, 610, 940
RsaNI	GTAC	3 cut(s)	251, 609, 939
RseI	CAYNNNNRTG	2 cut(s)	686, 768
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	393, 441, 888, 1076
SatI	GCNGC	3 cut(s)	300, 641, 914
Sau3AI	GATC	5 cut(s)	43, 111, 511, 700, 800
ScaI	AGTACT	1 cut(s)	252
SchI	GAGTC	2 cut(s)	235, 329
ScrFI	CCNGG	6 cut(s)	96, 97, 228, 271, 327, 1086
SduI	GDGCHC	2 cut(s)	351, 1120
SfaNI	GCATC	3 cut(s)	502, 737, 1000
SmaI	CCCGGG	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	686, 768
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	4 cut(s)	30, 443, 458, 894
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	3 cut(s)	314, 774, 1007
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	6 cut(s)	94, 95, 226, 269, 325, 1084
TaaI	ACNGT	2 cut(s)	855, 1102
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	803
TasI	AATT	4 cut(s)	30, 443, 458, 894
TatI	WGTACW	1 cut(s)	250
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	3 cut(s)	449, 523, 757
Tru1I	TTAA	4 cut(s)	393, 441, 888, 1076
Tru9I	TTAA	4 cut(s)	393, 441, 888, 1076
TscAI	CASTG	3 cut(s)	41, 70, 550
TseFI	GTSAC	3 cut(s)	99, 238, 761
TseI	GCWGC	2 cut(s)	299, 913
Tsp45I	GTSAC	3 cut(s)	99, 238, 761
TspDTI	ATGAA	5 cut(s)	152, 381, 387, 633, 737
TspMI	CCCGGG	1 cut(s)	95
TspRI	CASTG	3 cut(s)	41, 70, 550
XapI	RAATTY	1 cut(s)	30
XbaI	TCTAGA	1 cut(s)	313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XmaI	CCCGGG	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	3 cut(s)	314, 774, 1007
ZrmI	AGTACT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.