RLG00000010209

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005480
Physical Location & Seq
Reverse (-)
64243292 .. 64243789
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010209

Sequence Viewer

Length: 384 bp
ATGGAAATTTCTGTACTTACAGTGATTCATCGTTACTCAGTTGCTATCCCAGTGGTTCCCACTATCAGAGTAATTGACACGTTTACAAAACTCGAAGAATTAGCACCAGACCACCAGTGGATGACTTTGCACCACCCCCGTCGAGCCCCACTTCTGCAGGCAGAGAGCCCAGCAGGGATGCAATCCTCAAGTTCATCTTGGTTTCAGTGGATACGAGCTCCTTACCATCGCCCTGGCTCGTCCACTACTGGTTCTAACAGTAGTCTATCCTATTCCAGACCATTTGCGATCCTAGCAGATTATACATGGGTTACAGTTGAAGCAAAGAAGAAGAAAATGCAAAAGAAGAACAAATCAAGGAAAGGAAAAGGTCGCCACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_5 GPCR_chapero_1

Protein Analysis

128

Amino Acids

14.47

Weight (kDa)

10.41

Isoelectric Point (pI)

57.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 220
AlwI GGATC 1 cut(s) 283
ApoI RAATTY 1 cut(s) 6
BanII GRGCYC 3 cut(s) 148, 170, 220
Bbv12I GWGCWC 1 cut(s) 220
BccI CCATC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 204
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 232
Bse1I ACTGG 3 cut(s) 50, 115, 253
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 2 cut(s) 126, 183
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 3 cut(s) 50, 115, 253
BseYI CCCAGC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 220
Bsp1286I GDGCHC 3 cut(s) 148, 170, 220
Bsp143I GATC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 1 cut(s) 283
BsrI ACTGG 3 cut(s) 50, 115, 253
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 22, 260, 316
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 2 cut(s) 126, 183
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 233
BsuI GTATCC 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 2 cut(s) 126, 183
BtsIMutI CAGTG 4 cut(s) 27, 57, 122, 212
Cac8I GCNNGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 14
CviAII CATG 1 cut(s) 306
CviJI RGCY 4 cut(s) 146, 168, 218, 237
CviKI_1 RGCY 4 cut(s) 146, 168, 218, 237
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 3 cut(s) 148, 170, 220
Eco53kI GAGCTC 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 232
EcoT38I GRGCYC 3 cut(s) 148, 170, 220
FaeI CATG 1 cut(s) 309
FaiI YATR 2 cut(s) 303, 307
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FatI CATG 1 cut(s) 305
FokI GGATG 2 cut(s) 133, 190
FriOI GRGCYC 3 cut(s) 148, 170, 220
FspBI CTAG 1 cut(s) 293
GsaI CCCAGC 1 cut(s) 173
Hin1II CATG 1 cut(s) 309
HinfI GANTC 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 84, 243
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 84, 243
Hpy99I CGWCG 1 cut(s) 144
HpyCH4III ACNGT 3 cut(s) 22, 260, 316
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 130, 157, 181, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 1 cut(s) 309
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 223
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 32, 310
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 4 cut(s) 107, 340, 343, 358
MhlI GDGCHC 3 cut(s) 148, 170, 220
MluCI AATT 3 cut(s) 6, 72, 98
MnlI CCTC 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 159
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SacI GAGCTC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 3 cut(s) 148, 170, 220
SetI ASST 3 cut(s) 83, 220, 373
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 3 cut(s) 6, 72, 98
SspMI CTAG 1 cut(s) 293
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 22, 260, 316
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 93, 142
TasI AATT 3 cut(s) 6, 72, 98
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 4 cut(s) 27, 57, 122, 212
TspDTI ATGAA 2 cut(s) 17, 183
TspRI CASTG 4 cut(s) 27, 57, 122, 212
XapI RAATTY 1 cut(s) 6
XcmI CCANNNNNNNNNTGG 1 cut(s) 114
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.