Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005480

Physical Location & Seq

Genomic Coordinates Reverse (-)

31201034 .. 31201435

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0299200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGGCTAGGGCCAACAAGGGTCGTCAGAGAATCAAGATGCGCAAATTGGAAAACGACAGTAAACGGTACATTGTCCAAAAGAAGTTGTGGCGTTTCAAGAACAGTAGTGAACCCTGCACCCTTACTGGTGCAGAGATTGCCGTGATAATAGATTCCCCCGGAAAGAATATATTCTCGTTCGGGCACCCTTCTGTGCAGACCATCATTGACCGCTATGAGAACATGAATCCTTACTCAACCAACACTGAGCAACTGACGGAGGCTGCATGCAGAAGAAAAGTAGAGGATCTCATGGCAGAATTAGATGCTATTAATGAGGATCTGCAAAATGAGAAGATGAAAAGAAAAATTCTTAATCAAGAGGAGAGGGCCGATCGACCAGACTCATCACTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_5 GPCR_chapero_1

Protein Analysis

133

Amino Acids

15.42

Weight (kDa)

9.14

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04780
fragaria_vesca	FvH4_4g00280 FvH4_4g00280 FvH4_4g00280 FvH4_4g00280
malus_domestica	MD04G1002900.v1.1 MD13G1285000.v1.1
prunus_persica	Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1
pyrus_communis	pycom04g00300 pycom420g00660
rosa_chinensis	RchiOBHm_Chr4g0385121
rosa_laevigata	RLG00000010209 RLG00000010228 RLG00000010256
rosa_multiflora	Rmu_ssc0000158.1_g000038
rosa_roxburghii	Rroxscaffold_5G00333030 Rroxscaffold_5G00364810
rosa_rugosa	Rorug03G0299200 Rorug03G0299300 Rorug03G0299300
rosa_samantha	Rh4AG002800 Rh4BG002300 Rh4CG003100 Rh4DG002600
rosa_wichuraiana	Rw4G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	186
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	2 cut(s)	297, 330
AcsI	RAATTY	1 cut(s)	351
AfaI	GTAC	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	100
AlwI	GGATC	2 cut(s)	297, 330
AoxI	GGCC	2 cut(s)	12, 372
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	351
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	12, 372
AsuC2I	CCSGG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	162
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	12, 372
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	30, 298
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	133, 399
BseDI	CCNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	133, 399
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	3 cut(s)	103, 153, 218
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	2 cut(s)	14, 374
BshNI	GGYRCC	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	162
BsnI	GGCC	2 cut(s)	14, 374
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	289, 322, 376
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	14, 374
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	2 cut(s)	297, 330
BspT107I	GGYRCC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	133, 399
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	3 cut(s)	289, 322, 376
Bst4CI	ACNGT	3 cut(s)	62, 69, 107
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	3 cut(s)	292, 325, 379
BstMBI	GATC	3 cut(s)	289, 322, 376
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	2 cut(s)	289, 322
BstYI	RGATCY	2 cut(s)	289, 322
BsuRI	GGCC	2 cut(s)	14, 374
BtsIMutI	CAGTG	2 cut(s)	246, 392
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	12, 372
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	3 cut(s)	226, 270, 295
CviJI	RGCY	4 cut(s)	8, 14, 266, 374
CviKI_1	RGCY	4 cut(s)	8, 14, 266, 374
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	291, 324, 378
DpnII	GATC	3 cut(s)	289, 322, 376
FaeI	CATG	3 cut(s)	229, 273, 298
FaiI	YATR	6 cut(s)	173, 219, 227, 271, 296, 400
FatI	CATG	3 cut(s)	225, 269, 294
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	9
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	14, 374
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	229, 273, 298
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	4 cut(s)	33, 155, 229, 386
HpaII	CCGG	1 cut(s)	162
Hpy166II	GTNNAC	2 cut(s)	65, 113
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	37, 100, 362
Hpy8I	GTNNAC	2 cut(s)	65, 113
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	3 cut(s)	62, 69, 107
HpyCH4V	TGCA	6 cut(s)	120, 134, 199, 269, 273, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	229, 273, 298
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	289, 322, 376
LpnPI	CCDG	5 cut(s)	114, 130, 175, 380, 396
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	30, 298
MaeI	CTAG	1 cut(s)	9
MalI	GATC	3 cut(s)	291, 324, 378
MboI	GATC	3 cut(s)	289, 322, 376
MboII	GAAGA	2 cut(s)	288, 349
MflI	RGATCY	2 cut(s)	289, 322
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	3 cut(s)	47, 302, 351
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	5 cut(s)	256, 280, 313, 358, 363
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	2 cut(s)	315, 357
MslI	CAYNNNNRTG	1 cut(s)	397
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	289, 322, 376
NlaIII	CATG	3 cut(s)	229, 273, 298
NlaIV	GGNNCC	1 cut(s)	188
NsbI	TGCGCA	1 cut(s)	44
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	33, 155, 229
PkrI	GCNGC	1 cut(s)	268
Ple19I	CGATCG	1 cut(s)	379
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	12, 372
PsuI	RGATCY	2 cut(s)	289, 322
PvuI	CGATCG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	315, 357
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	3 cut(s)	289, 322, 376
Sau96I	GGNCC	2 cut(s)	12, 372
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	30, 298
SmiMI	CAYNNNNRTG	1 cut(s)	397
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	3 cut(s)	47, 302, 351
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	3 cut(s)	62, 69, 107
TaqI	TCGA	1 cut(s)	379
TasI	AATT	3 cut(s)	47, 302, 351
TfiI	GAWTC	3 cut(s)	33, 155, 229
Tru1I	TTAA	2 cut(s)	315, 357
Tru9I	TTAA	2 cut(s)	315, 357
TscAI	CASTG	2 cut(s)	253, 399
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	242, 356
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	2 cut(s)	253, 399
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	1 cut(s)	351
XceI	RCATGY	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.