RLG00000010228

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005480
Physical Location & Seq
Reverse (-)
64447344 .. 64448035
692 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010228

Sequence Viewer

Length: 387 bp
ATGGTTGCTATCGCAGTGGTTCGCACTATCAGAGTAATTGTCACTTATACAAAACTCGAAGACTTAGCACCAGCGGATGAATTTGCAACACCCCTGTCGAGCCCCACTTCTGCAGGCAGAGAGAGCCCAGAAGGGATGCAATCCTCGAGTTCATCTTGGTTTCAGTGGATACGAGCTCCTTACCATCGCCCTGGCTCGTCCACTACTGGTTATAGCAGCAGGATAGAAACTATTGCAGACCCATTTGCGATTCCAACAGATTATACATGGGTTACTGTTGAAGCAAAGAAGAAGAAAATGAAGGAGAAGAACAAATCAAAGAAAGGGAATTTAAAGTCACCACAAATGTGGTCAAGACGCGAATGTAAAGTGGATTTAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_5 GPCR_chapero_1

Protein Analysis

129

Amino Acids

14.37

Weight (kDa)

9.68

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANKRD13_C PF11904 2 - 89 9e-08 ANKRD13 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 360
AciI CCGC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 80, 328
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 190
AleI CACNNNNGTG 1 cut(s) 346
AluBI AGCT 2 cut(s) 176, 380
AluI AGCT 2 cut(s) 176, 380
Alw21I GWGCWC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 2 cut(s) 80, 328
AsuHPI GGTGA 1 cut(s) 330
AvaI CYCGRG 1 cut(s) 145
BanII GRGCYC 3 cut(s) 104, 128, 178
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 228
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 192
BciVI GTATCC 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 111
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 2 cut(s) 82, 141
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 3 cut(s) 104, 128, 178
BspACI CCGC 1 cut(s) 74
BspFNI CGCG 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 82, 141
BstFNI CGCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 66
BstXI CCANNNNNNTGG 2 cut(s) 191, 348
BsuI GTATCC 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 82, 141
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 21, 170
Cac8I GCNNGC 1 cut(s) 115
CseI GACGC 1 cut(s) 366
CviAII CATG 1 cut(s) 267
CviJI RGCY 5 cut(s) 102, 126, 176, 195, 380
CviKI_1 RGCY 5 cut(s) 102, 126, 176, 195, 380
DdeI CTNAG 1 cut(s) 64
DraI TTTAAA 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 3 cut(s) 104, 128, 178
Eco53kI GAGCTC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 190
EcoT38I GRGCYC 3 cut(s) 104, 128, 178
FaeI CATG 1 cut(s) 270
FaiI YATR 4 cut(s) 48, 213, 264, 268
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 2 cut(s) 89, 148
FriOI GRGCYC 3 cut(s) 104, 128, 178
Fsp4HI GCNGC 1 cut(s) 217
GluI GCNGC 1 cut(s) 217
HgaI GACGC 1 cut(s) 366
Hin1II CATG 1 cut(s) 270
HinfI GANTC 1 cut(s) 250
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 125, 295
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 86, 113, 139, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 64
Hsp92II CATG 1 cut(s) 270
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 84, 99, 107, 141, 177, 192, 204, 205
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 40, 271, 336
MboII GAAGA 4 cut(s) 71, 301, 304, 319
MhlI GDGCHC 3 cut(s) 104, 128, 178
MluCI AATT 3 cut(s) 36, 80, 328
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 1 cut(s) 154
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIII CATG 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 40, 336
OliI CACNNNNGTG 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 145
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 145
PstI CTGCAG 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 346
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 3 cut(s) 104, 128, 178
SetI ASST 2 cut(s) 178, 382
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 3 cut(s) 36, 80, 328
SsiI CCGC 1 cut(s) 74
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 57, 98, 146
TasI AATT 3 cut(s) 36, 80, 328
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 21, 170
TseFI GTSAC 2 cut(s) 40, 336
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 2 cut(s) 40, 336
TspDTI ATGAA 3 cut(s) 93, 141, 314
TspRI CASTG 2 cut(s) 21, 170
XapI RAATTY 2 cut(s) 80, 328
XhoI CTCGAG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.