Rroxscaffold_5G00364810

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005480
Physical Location & Seq
Reverse (-)
46012031 .. 46012537
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364810.1

Sequence Viewer

Length: 477 bp
ATGTCTCGGACTATTATATTCAGGTACGGCATTGATGTGACTCGGGAAGTTCTCTTACCTCGGTTGACTTGGAGGCGGCAGGAGAAAACAAAAACGGTTGGATCATGGAAAGCTAAGGTATATGATATGCATAATGTGGTTGTGAGTATCAAGTCTAGGCGGGTCCACGGGGCTATGACGGATGATGAGTTTTCTCATCTTGCAATGAAAATGAAACAGAAAGATGAGAGGAAGCAACTTGAAGTTGCACCGAAACCGGATTCATCCGAATCGACCAACGAGAGTGGTGATGGAATTATCGAGCATCGTCATAGTTGTTATGAGTCAAGAGAAATTCCTATTGAGGATGTAAGCAATTGTAGAAATGGAGAGACCAAGCGGAAAAGAAAGGATGGTTTGGTGGATGGAGGAAATGGGATACCAAAAATGAAAGACATAAAAAGACGCCCCACCAAGAAGTTCTCTTTGTGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_5 GPCR_chapero_1

Protein Analysis

158

Amino Acids

18.23

Weight (kDa)

9.73

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANKRD13_C PF11904 1 - 110 5.7e-22 ANKRD13 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 76, 160, 379
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 445
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 9, 365
AlwI GGATC 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 42
ApoI RAATTY 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 42
AvaII GGWCC 1 cut(s) 163
BarI GAAGNNNNNNTAC 2 cut(s) 39, 71
BccI CCATC 3 cut(s) 284, 386, 398
BceAI ACGGC 1 cut(s) 43
BciVI GTATCC 1 cut(s) 411
BcoDI GTCTC 2 cut(s) 9, 365
BfaI CTAG 1 cut(s) 156
BfuI GTATCC 1 cut(s) 411
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 313
Bpu10I CCTNAGC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 59, 166
BsaWI WCCGGW 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 59, 166
BseGI GGATG 5 cut(s) 187, 263, 352, 397, 409
BseMI GCAATG 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 9, 365
Bso31I GGTCTC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 42
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 3 cut(s) 76, 160, 379
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 59, 166
BssMI GATC 1 cut(s) 101
BssNI GRCGYC 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 445
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 5 cut(s) 187, 263, 352, 397, 409
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 2 cut(s) 9, 365
BstMBI GATC 1 cut(s) 101
BsuI GTATCC 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 5 cut(s) 187, 263, 352, 397, 409
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 453
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 1 cut(s) 105
CviJI RGCY 2 cut(s) 113, 173
CviKI_1 RGCY 2 cut(s) 113, 173
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 132
FaeI CATG 1 cut(s) 108
FatI CATG 1 cut(s) 104
FauI CCCGC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 5 cut(s) 194, 250, 359, 404, 416
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 77
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 453
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 1 cut(s) 108
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 4 cut(s) 40, 260, 269, 323
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 66, 166
Hpy188I TCNGA 2 cut(s) 9, 268
Hpy188III TCNNGA 2 cut(s) 44, 327
Hpy8I GTNNAC 2 cut(s) 66, 166
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 130, 203, 248
HpyF3I CTNAG 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 1 cut(s) 108
Kzo9I GATC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 7, 65, 270
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 37
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MfeI CAATTG 1 cut(s) 355
MluCI AATT 3 cut(s) 294, 333, 355
MlyI GAGTC 2 cut(s) 34, 332
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 5 cut(s) 66, 69, 222, 337, 401
Mph1103I ATGCAT 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 355
NdeII GATC 1 cut(s) 101
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 132
PfeI GAWTC 2 cut(s) 260, 269
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 2 cut(s) 34, 331
PpsI GAGTC 2 cut(s) 34, 331
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 163
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 2 cut(s) 34, 332
SetI ASST 4 cut(s) 26, 61, 115, 120
SfaNI GCATC 1 cut(s) 313
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 3 cut(s) 294, 333, 355
SsiI CCGC 3 cut(s) 76, 160, 379
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 272, 300
TasI AATT 3 cut(s) 294, 333, 355
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 2 cut(s) 260, 269
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 4 cut(s) 221, 227, 252, 443
TspGWI ACGGA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 333
XspI CTAG 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.