Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005480

Physical Location & Seq

Genomic Coordinates Reverse (-)

31213114 .. 31223870

Gene Structure 10757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0299300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGAAGCTTTCCACATCAGGGTTCGGTCGGCAGGACCAAGAAGGAGGAGGAGGAGGAGGAGCGGAGAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCAGGGCCTCTGGTGTCGCTGCCGACGTCTGGGAGTCGAGTGGTTTACTTTCCTCAGGGCCACAGTGACCAGGTTGCTGCTACTACTAACAAACAAGTTGATGCTCACATACCAAACTACCCGGCCTTGCCTCCCCAGTTGATCTGTCAGCTCCACAATGTCACAATGCATGCAGATGTGGAGACGGATGAAGTATATGCCCAGATGACGTTGCAGCCTTTGACTCCGCAAGAACAGAAGGAAACATTTCTTCCCATGGAGTTGGGAATTCCAAGCAAGCAACCGACAAATTACTTTTGCAAGACACTCACGGCGAGTGACACTAGTACACACGGAGGCTTCTCTGTCCCTCGTCGCGCCGCTGAGAAAGTGTTTCCTCCACTGGATTTCTCGCTACAGCCACCAGCCCAGGAACTTATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTAGGCACATTTTTCGAGGACAGCCAAAACGGCATCTTCTTACAACAGGTTGGAGTGTGTTTGTTAGTGCCAAAAGGCTTGTTGCAGGAGATTCTGTTCTTTTTATTTGGAATGAAAAGAATCAGCTCCTTTTGGGGATTCGCCGTGCAACTCGACCACAAACTGTGATGCCATCATCTGTTCTGTCAAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCTGCCCATGCGTCTTCAACTAATAGCTGTTTTACTGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCCCTATCAAAATACATTAAAGCAGTATTTCACACACGTGTTTCAGTTGGGATGCGATTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCAGAAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCAACCGCAGGTGAGAGGCAGCCAAGGGTTTCGTTGTGGGAGATTGAGCCTTTGACCACTTTCCCCATGTACCCATCACTGTTTCCCCTTCGACTGAAGCGTCCTTGGCATCCTGGGGCATCATCAATGCATGATAACAGAGATGAAGCAGCTAATAGCTTAATGTGGCTAAGGGGTGGAACTGGAGAGCAAGGTCTTCAATCCATGAACTTCCAAGCTGTTGGTATGTTTCCTTGGATGCAGCAGAGATTGGATTCAACATTGATGGGAAATGACCCCAATCAGCAGTACCAGGCCATGTTGGCTGCTGGTTTACAAAATATAGGAAGTGGAGATCAGCTAAGACAACATGTAATGCACTTCCAGCAGCCGGGTAGCCACAATCCTCTTCAGTACCTTCAGCAGCCGGGTAGCCACAATCCTCTGTTGCAGCTGCAACAGCAAGTAATTCCGCAATCAGTCCCTCATAATATGCTGCAGGCACAACCACAAGTTTCAATGGAGAATCTGCCTCAGCAACTTCTACCACCACAATTTAACAATCAAACAGAGGAAGAGCCGCAGCAACAGCACAACACCTATCATGATGCACGTAAGGTTCAAAGGGAACAACTCCATCAGAGTCAGCAAATGAATTTGCCATCTCCATCATTTTCCAAAACGGACTTCGCTGATTCAAGCACAAAGTTGTCAGGGTCTACTACCTCTAGACAGAACACGCTTGGTTCACTGTGTCCTGAAGGGAATAATAATCTTTTGAACATCTCCAGAGCTGGTCATTCTTTGCCAGCTGAGCAGTTACCTCAACAATCCTGGGCTCCAAAGTTTGCATATGCTCAGGCCAATGACTTTGCCAACCCAATGTCATTCACACCTTTTAATGAGAAAGACAATGCAGTTGAGCAAGAGAATTGTAATTCAGATTCCCAGAATCCTACTCTTTTTGGTGTTAATATAGAATCATCTGGGCTTGTATTCCCCACCACAGTGCCGAACTTTGCCACTTCTTCAAATGATGCTGACATGCCAATGCCTTTAGGGGATTCTGGATTTCAGAGTTCTCTGTATGGTTGCATGCAAGGTTCATCTGAGTTGTTGCACGGTGCAGGTCAAGTTGACCCACCAACCCCGAACTGTACATTTGTCAAGGTGTATAAGTCAGGGTCGGTTGGCCGCTCACTGGACATTTCCCGGTTCAGCAGCTATAATCAGCTGCGGGAAGAACTGGCCCAGATGTTTGGCATTGAGGGGAAGTTGGAAGATCGTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTGCTTCTTCTTGGAGACGACCCATGGGAGTCATTTGTGAACAACGTTTGGTATATCAAGATACTTTCTCCTGAGGATGTGCACAAAATGGGCGACCAAGCAGTTGAATCCTTTAGCCCAAATGTGGGTCAAAGGTTGAATAGCAGTGGAAATGAAACTCAAGACCATATATCTGGGCTACCATCTCTCGGCTCACTTGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_5 GPCR_chapero_1

Protein Analysis

852

Amino Acids

94.85

Weight (kDa)

5.89

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	133 - 234	6.3e-22	B3 DNA binding domain
BRWD_AD	PF25313	257 - 365	9e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	282 - 365	7.6e-34	Auxin response factor ancillary domain
AUX_IAA	PF02309	724 - 811	2.3e-07	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04780
fragaria_vesca	FvH4_4g00280 FvH4_4g00280 FvH4_4g00280 FvH4_4g00280
malus_domestica	MD04G1002900.v1.1 MD13G1285000.v1.1
prunus_persica	Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1 Prupe.1G002800_v2.0.a1
pyrus_communis	pycom04g00300 pycom420g00660
rosa_chinensis	RchiOBHm_Chr4g0385121
rosa_laevigata	RLG00000010209 RLG00000010228 RLG00000010256
rosa_multiflora	Rmu_ssc0000158.1_g000038
rosa_roxburghii	Rroxscaffold_5G00333030 Rroxscaffold_5G00364810
rosa_rugosa	Rorug03G0299200 Rorug03G0299300 Rorug03G0299300
rosa_samantha	Rh4AG002800 Rh4BG002300 Rh4CG003100 Rh4DG002600
rosa_wichuraiana	Rw4G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AarI	CACCTGC	1 cut(s)	1040
AasI	GACNNNNNNGTC	2 cut(s)	934, 1140
AatII	GACGTC	1 cut(s)	131
Acc16I	TGCGCA	1 cut(s)	103
Acc36I	ACCTGC	2 cut(s)	1040, 2138
AccBSI	CCGCTC	2 cut(s)	62, 2217
AccI	GTMKAC	2 cut(s)	1739, 2337
AccII	CGCG	1 cut(s)	459
AciI	CCGC	8 cut(s)	62, 329, 462, 1047, 1493, 1601, 2215, 2257
AclI	AACGTT	1 cut(s)	2397
AclWI	GGATC	3 cut(s)	537, 980, 993
AcoI	YGGCCR	2 cut(s)	998, 2212
AcsI	RAATTY	4 cut(s)	79, 369, 1003, 1675
AcuI	CTGAAG	5 cut(s)	951, 1157, 1415, 1424, 1800
AcvI	CACGTG	1 cut(s)	890
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	7 cut(s)	430, 953, 961, 1112, 1331, 1436, 2179
AfiI	CCNNNNNNNGG	7 cut(s)	18, 131, 1411, 2221, 2476, 2477, 2540
AflIII	ACRYGT	3 cut(s)	887, 889, 1390
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	5 cut(s)	171, 510, 1153, 1332, 1853
AjuI	GAANNNNNNNTTGG	2 cut(s)	1691, 1723
AleI	CACNNNNGTG	2 cut(s)	888, 2027
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
Alw21I	GWGCWC	1 cut(s)	2436
Alw26I	GTCTC	3 cut(s)	278, 920, 2361
Alw44I	GTGCAC	1 cut(s)	2432
AlwI	GGATC	3 cut(s)	537, 980, 993
AoxI	GGCC	8 cut(s)	107, 160, 225, 998, 1335, 1881, 2212, 2268
ApaLI	GTGCAC	1 cut(s)	2432
ApoI	RAATTY	4 cut(s)	79, 369, 1003, 1675
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	104, 461
AspS9I	GGNCC	4 cut(s)	34, 107, 160, 2269
AsuC2I	CCSGG	4 cut(s)	224, 1413, 1449, 2233
AsuHPI	GGTGA	1 cut(s)	1064
AvaII	GGWCC	1 cut(s)	34
AxyI	CCTNAGG	2 cut(s)	156, 2424
BaeGI	GKGCMC	1 cut(s)	2436
BaeI	ACNNNNGTAYC	2 cut(s)	943, 976
BalI	TGGCCA	1 cut(s)	1000
BamHI	GGATCC	1 cut(s)	985
BanII	GRGCYC	1 cut(s)	1861
BbrPI	CACGTG	1 cut(s)	890
BbsI	GAAGAC	2 cut(s)	780, 1229
Bbv12I	GWGCWC	1 cut(s)	2436
BbvCI	CCTCAGC	1 cut(s)	1554
BccI	CCATC	8 cut(s)	733, 844, 1123, 1300, 1665, 1690, 1696, 2542
BceAI	ACGGC	3 cut(s)	429, 599, 681
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	5 cut(s)	173, 512, 1155, 1334, 1855
BcnI	CCSGG	4 cut(s)	224, 1413, 1449, 2233
BcoDI	GTCTC	3 cut(s)	278, 920, 2361
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	4 cut(s)	426, 525, 831, 1749
BfmI	CTRYAG	2 cut(s)	497, 1517
BfuAI	ACCTGC	2 cut(s)	1040, 2138
BglI	GCCNNNNNGGC	2 cut(s)	583, 1343
BlpI	GCTNAGC	1 cut(s)	1833
Bme1390I	CCNGG	9 cut(s)	173, 224, 512, 1155, 1334, 1413, 1449, 1855, 2233
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	4 cut(s)	34, 107, 160, 2269
BmiI	GGNNCC	2 cut(s)	987, 1860
BmrFI	CCNGG	9 cut(s)	173, 224, 512, 1155, 1334, 1413, 1449, 1855, 2233
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	2 cut(s)	780, 1229
BpmI	CTGGAG	2 cut(s)	1245, 1792
Bpu10I	CCTNAGC	3 cut(s)	1211, 1554, 1878
Bpu1102I	GCTNAGC	1 cut(s)	1833
BpuEI	CTTGAG	1 cut(s)	2496
BpuMI	CCSGG	4 cut(s)	224, 1413, 1449, 2233
BsaAI	YACGTR	2 cut(s)	890, 1634
BsaBI	GATNNNNATC	1 cut(s)	984
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	9 cut(s)	357, 510, 824, 1064, 1145, 1154, 1274, 1854, 2375
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 633, 663
Bsc4I	CCNNNNNNNGG	7 cut(s)	18, 131, 1411, 2221, 2476, 2477, 2540
Bse1I	ACTGG	6 cut(s)	238, 489, 973, 1228, 2226, 2271
Bse21I	CCTNAGG	2 cut(s)	156, 2424
Bse8I	GATNNNNATC	1 cut(s)	984
BseBI	CCWGG	5 cut(s)	173, 512, 1155, 1334, 1855
BseDI	CCNNGG	9 cut(s)	357, 510, 824, 1064, 1145, 1154, 1274, 1854, 2375
BseGI	GGATG	7 cut(s)	295, 909, 921, 1042, 1150, 1284, 2434
BseJI	GATNNNNATC	1 cut(s)	984
BseLI	CCNNNNNNNGG	7 cut(s)	18, 131, 1411, 2221, 2476, 2477, 2540
BseMII	CTCAG	8 cut(s)	170, 456, 831, 1568, 1824, 1892, 2121, 2415
BseNI	ACTGG	6 cut(s)	238, 489, 973, 1228, 2226, 2271
BseRI	GAGGAG	5 cut(s)	60, 63, 66, 69, 72
BseSI	GKGCMC	1 cut(s)	2436
BsgI	GTGCAG	1 cut(s)	2166
Bsh1236I	CGCG	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	8 cut(s)	109, 162, 227, 1000, 1337, 1883, 2214, 2270
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	2436
BsiSI	CCGG	4 cut(s)	224, 1412, 1448, 2233
BslFI	GGGAC	2 cut(s)	434, 1487
BslI	CCNNNNNNNGG	7 cut(s)	18, 131, 1411, 2221, 2476, 2477, 2540
BsmAI	GTCTC	3 cut(s)	278, 920, 2361
BsmBI	CGTCTC	2 cut(s)	278, 2361
BsmFI	GGGAC	2 cut(s)	434, 1487
BsnI	GGCC	8 cut(s)	109, 162, 227, 1000, 1337, 1883, 2214, 2270
Bsp1286I	GDGCHC	2 cut(s)	1861, 2436
Bsp1407I	TGTACA	1 cut(s)	2177
Bsp143I	GATC	8 cut(s)	243, 529, 979, 985, 1016, 1375, 2302, 2312
Bsp1720I	GCTNAGC	1 cut(s)	1833
Bsp19I	CCATGG	2 cut(s)	357, 2375
BspACI	CCGC	8 cut(s)	62, 329, 462, 1047, 1493, 1601, 2215, 2257
BspANI	GGCC	8 cut(s)	109, 162, 227, 1000, 1337, 1883, 2214, 2270
BspCNI	CTCAG	8 cut(s)	169, 457, 832, 1567, 1825, 1891, 2122, 2416
BspFNI	CGCG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	1624
BspLI	GGNNCC	2 cut(s)	987, 1860
BspMAI	CTGCAG	1 cut(s)	1521
BspMI	ACCTGC	2 cut(s)	1040, 2138
BspPI	GGATC	3 cut(s)	537, 980, 993
BspQI	GCTCTTC	1 cut(s)	1590
BsrBI	CCGCTC	2 cut(s)	62, 2217
BsrGI	TGTACA	1 cut(s)	2177
BsrI	ACTGG	6 cut(s)	238, 489, 973, 1228, 2226, 2271
BssECI	CCNNGG	9 cut(s)	357, 510, 824, 1064, 1145, 1154, 1274, 1854, 2375
BssMI	GATC	8 cut(s)	243, 529, 979, 985, 1016, 1375, 2302, 2312
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	6 cut(s)	357, 824, 1064, 1145, 1274, 2375
Bst2UI	CCWGG	5 cut(s)	173, 512, 1155, 1334, 1855
Bst4CI	ACNGT	8 cut(s)	167, 718, 811, 1122, 1773, 2029, 2144, 2177
Bst6I	CTCTTC	3 cut(s)	927, 1434, 1590
BstACI	GRCGYC	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	2177
BstBAI	YACGTR	2 cut(s)	890, 1634
BstC8I	GCNNGC	9 cut(s)	96, 100, 273, 380, 752, 1521, 1830, 2117, 2321
BstDSI	CCRYGG	2 cut(s)	357, 2375
BstF5I	GGATG	7 cut(s)	295, 909, 921, 1042, 1150, 1284, 2434
BstFNI	CGCG	1 cut(s)	459
BstHHI	GCGC	2 cut(s)	104, 461
BstKTI	GATC	8 cut(s)	246, 532, 982, 988, 1019, 1378, 2305, 2315
BstMAI	GTCTC	3 cut(s)	278, 920, 2361
BstMBI	GATC	8 cut(s)	243, 529, 979, 985, 1016, 1375, 2302, 2312
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	9 cut(s)	583, 776, 782, 1147, 1343, 1405, 1480, 1609, 1834
BstNI	CCWGG	5 cut(s)	173, 512, 1155, 1334, 1855
BstNSI	RCATGY	7 cut(s)	98, 102, 275, 754, 1394, 2068, 2119
BstSCI	CCNGG	9 cut(s)	171, 222, 510, 1153, 1332, 1411, 1447, 1853, 2231
BstSFI	CTRYAG	2 cut(s)	497, 1517
BstSLI	GKGCMC	1 cut(s)	2436
BstUI	CGCG	1 cut(s)	459
BstV2I	GAAGAC	2 cut(s)	780, 1229
BstX2I	RGATCY	2 cut(s)	529, 985
BstXI	CCANNNNNNTGG	4 cut(s)	364, 1262, 2279, 2525
BstYI	RGATCY	2 cut(s)	529, 985
Bsu36I	CCTNAGG	2 cut(s)	156, 2424
BsuRI	GGCC	8 cut(s)	109, 162, 227, 1000, 1337, 1883, 2214, 2270
BtgI	CCRYGG	2 cut(s)	357, 2375
BtsCI	GGATG	7 cut(s)	295, 909, 921, 1042, 1150, 1284, 2434
BtsI	GCAGTG	1 cut(s)	2503
BtsIMutI	CAGTG	7 cut(s)	172, 482, 1118, 1769, 2034, 2219, 2503
BveI	ACCTGC	2 cut(s)	1040, 2138
Cac8I	GCNNGC	9 cut(s)	96, 100, 273, 380, 752, 1521, 1830, 2117, 2321
CciI	TCATGA	1 cut(s)	1624
CfoI	GCGC	2 cut(s)	104, 461
Cfr13I	GGNCC	4 cut(s)	34, 107, 160, 2269
CseI	GACGC	2 cut(s)	774, 1130
CsiI	ACCWGGT	1 cut(s)	171
Csp6I	GTAC	7 cut(s)	429, 952, 960, 1111, 1330, 1435, 2178
CviQI	GTAC	7 cut(s)	429, 952, 960, 1111, 1330, 1435, 2178
DpnI	GATC	8 cut(s)	245, 531, 981, 987, 1018, 1377, 2304, 2314
DpnII	GATC	8 cut(s)	243, 529, 979, 985, 1016, 1375, 2302, 2312
DrdI	GACNNNNNNGTC	2 cut(s)	934, 1140
DseDI	GACNNNNNNGTC	2 cut(s)	934, 1140
EaeI	YGGCCR	2 cut(s)	998, 2212
Eam1104I	CTCTTC	3 cut(s)	927, 1434, 1590
EarI	CTCTTC	3 cut(s)	927, 1434, 1590
Eco130I	CCWWGG	6 cut(s)	357, 824, 1064, 1145, 1274, 2375
Eco24I	GRGCYC	1 cut(s)	1861
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	5 cut(s)	951, 1157, 1415, 1424, 1800
Eco72I	CACGTG	1 cut(s)	890
Eco81I	CCTNAGG	2 cut(s)	156, 2424
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRI	GAATTC	2 cut(s)	79, 369
EcoRII	CCWGG	5 cut(s)	171, 510, 1153, 1332, 1853
EcoT14I	CCWWGG	6 cut(s)	357, 824, 1064, 1145, 1274, 2375
EcoT22I	ATGCAT	3 cut(s)	100, 273, 1173
EcoT38I	GRGCYC	1 cut(s)	1861
ErhI	CCWWGG	6 cut(s)	357, 824, 1064, 1145, 1274, 2375
Esp3I	CGTCTC	2 cut(s)	278, 2361
FalI	AAGNNNNNCTT	2 cut(s)	2292, 2324
FaqI	GGGAC	2 cut(s)	434, 1487
FauI	CCCGC	1 cut(s)	2250
FauNDI	CATATG	1 cut(s)	1873
FblI	GTMKAC	2 cut(s)	1739, 2337
FokI	GGATG	7 cut(s)	302, 916, 928, 1049, 1137, 1291, 2441
FriOI	GRGCYC	1 cut(s)	1861
FspBI	CTAG	4 cut(s)	426, 525, 831, 1749
FspI	TGCGCA	1 cut(s)	103
GlaI	GCGC	2 cut(s)	103, 460
GsuI	CTGGAG	2 cut(s)	1245, 1792
HaeIII	GGCC	8 cut(s)	109, 162, 227, 1000, 1337, 1883, 2214, 2270
HapII	CCGG	4 cut(s)	224, 1412, 1448, 2233
HgaI	GACGC	2 cut(s)	774, 1130
HhaI	GCGC	2 cut(s)	104, 461
Hin1I	GRCGYC	1 cut(s)	128
Hin6I	GCGC	2 cut(s)	102, 459
HinP1I	GCGC	2 cut(s)	102, 459
HincII	GTYRAC	3 cut(s)	1044, 2158, 2338
HindII	GTYRAC	3 cut(s)	1044, 2158, 2338
HindIII	AAGCTT	1 cut(s)	5
HpaII	CCGG	4 cut(s)	224, 1412, 1448, 2233
HphI	GGTGA	1 cut(s)	1064
Hpy188I	TCNGA	8 cut(s)	85, 841, 915, 947, 1662, 1963, 2097, 2131
Hpy188III	TCNNGA	9 cut(s)	983, 1625, 1749, 1778, 1809, 2088, 2410, 2423, 2513
Hpy99I	CGWCG	3 cut(s)	130, 459, 2339
HpyAV	CCTTC	6 cut(s)	35, 334, 942, 1139, 1448, 1775
HpyCH4III	ACNGT	8 cut(s)	167, 718, 811, 1122, 1773, 2029, 2144, 2177
HpyCH4IV	ACGT	5 cut(s)	128, 311, 889, 1633, 2397
HpyF10VI	GCNNNNNNNGC	9 cut(s)	583, 776, 782, 1147, 1343, 1405, 1480, 1609, 1834
HpySE526I	ACGT	5 cut(s)	128, 311, 889, 1633, 2397
Hsp92I	GRCGYC	1 cut(s)	128
HspAI	GCGC	2 cut(s)	102, 459
Kzo9I	GATC	8 cut(s)	243, 529, 979, 985, 1016, 1375, 2302, 2312
LguI	GCTCTTC	1 cut(s)	1590
LmnI	GCTCC	4 cut(s)	59, 258, 684, 1864
MabI	ACCWGGT	1 cut(s)	171
MaeI	CTAG	4 cut(s)	426, 525, 831, 1749
MaeII	ACGT	5 cut(s)	128, 311, 889, 1633, 2397
MaeIII	GTNAC	4 cut(s)	167, 262, 419, 1839
MalI	GATC	8 cut(s)	245, 531, 981, 987, 1018, 1377, 2304, 2314
MbiI	CCGCTC	2 cut(s)	62, 2217
MboI	GATC	8 cut(s)	243, 529, 979, 985, 1016, 1375, 2302, 2312
MflI	RGATCY	2 cut(s)	529, 985
MhlI	GDGCHC	2 cut(s)	1861, 2436
MlsI	TGGCCA	1 cut(s)	1000
MluCI	AATT	9 cut(s)	79, 369, 391, 1003, 1488, 1574, 1675, 1951, 1957
MluNI	TGGCCA	1 cut(s)	1000
MlyI	GAGTC	6 cut(s)	145, 319, 944, 1049, 1672, 2390
MmeI	TCCRAC	2 cut(s)	584, 2277
Mox20I	TGGCCA	1 cut(s)	1000
Mph1103I	ATGCAT	3 cut(s)	100, 273, 1173
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	1000
MseI	TTAA	5 cut(s)	870, 1202, 1578, 1920, 1992
MslI	CAYNNNNRTG	4 cut(s)	276, 888, 2027, 2069
Msp20I	TGGCCA	1 cut(s)	1000
MspA1I	CMGCKG	4 cut(s)	464, 1474, 1832, 2254
MspI	CCGG	4 cut(s)	224, 1412, 1448, 2233
MspR9I	CCNGG	9 cut(s)	173, 224, 512, 1155, 1334, 1413, 1449, 1855, 2233
MvaI	CCWGG	5 cut(s)	173, 512, 1155, 1334, 1855
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	9 cut(s)	583, 776, 782, 1147, 1343, 1405, 1480, 1609, 1834
NciI	CCSGG	4 cut(s)	224, 1413, 1449, 2233
NcoI	CCATGG	2 cut(s)	357, 2375
NdeI	CATATG	1 cut(s)	1873
NdeII	GATC	8 cut(s)	243, 529, 979, 985, 1016, 1375, 2302, 2312
NlaIV	GGNNCC	2 cut(s)	987, 1860
NmeAIII	GCCGAG	1 cut(s)	2520
NmuCI	GTSAC	3 cut(s)	167, 262, 419
NsbI	TGCGCA	1 cut(s)	103
NsiI	ATGCAT	3 cut(s)	100, 273, 1173
NspI	RCATGY	7 cut(s)	98, 102, 275, 754, 1394, 2068, 2119
OliI	CACNNNNGTG	2 cut(s)	888, 2027
PaeI	GCATGC	5 cut(s)	98, 102, 275, 754, 2119
PagI	TCATGA	1 cut(s)	1624
PaqCI	CACCTGC	1 cut(s)	1040
PciI	ACATGT	1 cut(s)	1390
PciSI	GCTCTTC	1 cut(s)	1590
PcsI	WCGNNNNNNNCGW	2 cut(s)	125, 1138
PdmI	GAANNNNTTC	1 cut(s)	348
PleI	GAGTC	6 cut(s)	144, 319, 943, 1048, 1671, 2389
PmaCI	CACGTG	1 cut(s)	890
PmlI	CACGTG	1 cut(s)	890
PpsI	GAGTC	6 cut(s)	144, 319, 943, 1048, 1671, 2389
Ppu21I	YACGTR	2 cut(s)	890, 1634
PscI	ACATGT	1 cut(s)	1390
PsiI	TTATAA	1 cut(s)	819
Psp1406I	AACGTT	1 cut(s)	2397
Psp6I	CCWGG	5 cut(s)	171, 510, 1153, 1332, 1853
PspCI	CACGTG	1 cut(s)	890
PspGI	CCWGG	5 cut(s)	171, 510, 1153, 1332, 1853
PspN4I	GGNNCC	2 cut(s)	987, 1860
PspPI	GGNCC	4 cut(s)	34, 107, 160, 2269
PstI	CTGCAG	1 cut(s)	1521
PsuI	RGATCY	2 cut(s)	529, 985
PvuII	CAGCTG	3 cut(s)	1474, 1832, 2254
RsaI	GTAC	7 cut(s)	430, 953, 961, 1112, 1331, 1436, 2179
RsaNI	GTAC	7 cut(s)	429, 952, 960, 1111, 1330, 1435, 2178
RseI	CAYNNNNRTG	4 cut(s)	276, 888, 2027, 2069
SalI	GTCGAC	1 cut(s)	2336
SapI	GCTCTTC	1 cut(s)	1590
SaqAI	TTAA	5 cut(s)	870, 1202, 1578, 1920, 1992
Sau3AI	GATC	8 cut(s)	243, 529, 979, 985, 1016, 1375, 2302, 2312
Sau96I	GGNCC	4 cut(s)	34, 107, 160, 2269
SchI	GAGTC	6 cut(s)	145, 319, 944, 1049, 1672, 2390
ScrFI	CCNGG	9 cut(s)	173, 224, 512, 1155, 1334, 1413, 1449, 1855, 2233
SduI	GDGCHC	2 cut(s)	1861, 2436
SexAI	ACCWGGT	1 cut(s)	171
SfcI	CTRYAG	2 cut(s)	497, 1517
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	4 cut(s)	276, 888, 2027, 2069
SmlI	CTYRAG	2 cut(s)	2511, 2549
SmoI	CTYRAG	2 cut(s)	2511, 2549
SpeI	ACTAGT	1 cut(s)	425
SphI	GCATGC	5 cut(s)	98, 102, 275, 754, 2119
Sse9I	AATT	9 cut(s)	79, 369, 391, 1003, 1488, 1574, 1675, 1951, 1957
SsiI	CCGC	8 cut(s)	62, 329, 462, 1047, 1493, 1601, 2215, 2257
SspMI	CTAG	4 cut(s)	426, 525, 831, 1749
StyD4I	CCNGG	9 cut(s)	171, 222, 510, 1153, 1332, 1411, 1447, 1853, 2231
StyI	CCWWGG	6 cut(s)	357, 824, 1064, 1145, 1274, 2375
TaaI	ACNGT	8 cut(s)	167, 718, 811, 1122, 1773, 2029, 2144, 2177
TaiI	ACGT	5 cut(s)	131, 314, 892, 1636, 2400
TaqI	TCGA	5 cut(s)	139, 568, 706, 1132, 2337
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	9 cut(s)	79, 369, 391, 1003, 1488, 1574, 1675, 1951, 1957
TatI	WGTACW	2 cut(s)	428, 2177
TauI	GCSGC	3 cut(s)	464, 1603, 2217
Tru1I	TTAA	5 cut(s)	870, 1202, 1578, 1920, 1992
Tru9I	TTAA	5 cut(s)	870, 1202, 1578, 1920, 1992
TscAI	CASTG	7 cut(s)	172, 489, 1125, 1776, 2034, 2226, 2503
TseFI	GTSAC	3 cut(s)	167, 262, 419
Tsp45I	GTSAC	3 cut(s)	167, 262, 419
TspDTI	ATGAA	8 cut(s)	17, 306, 681, 1200, 1262, 1688, 2115, 2520
TspGWI	ACGGA	3 cut(s)	302, 450, 1718
TspRI	CASTG	7 cut(s)	172, 489, 1125, 1776, 2034, 2226, 2503
VneI	GTGCAC	1 cut(s)	2432
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	4 cut(s)	79, 369, 1003, 1675
XbaI	TCTAGA	1 cut(s)	1748
XceI	RCATGY	7 cut(s)	98, 102, 275, 754, 1394, 2068, 2119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1008
XmiI	GTMKAC	2 cut(s)	1739, 2337
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	4 cut(s)	426, 525, 831, 1749
ZraI	GACGTC	1 cut(s)	129
Zsp2I	ATGCAT	3 cut(s)	100, 273, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.